IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
68	 47.38	+2	78953..79315	+	120	121601853	rpsP	BARBAKC583_0069	-	30S ribosomal protein S16
69	 48.31	+2	79464..79670	-	68	121602399	-	BARBAKC583_0070	-	hypothetical protein
70	 43.80	+1	79755..80786	+	343	121601682	-	BARBAKC583_0071	-	heat shock protein HtpX
71	 43.18	+1	80897..82267	+	456	121602907	-	BARBAKC583_0072	-	putative ribosomal RNA small subunit methyltransferase B
72	 41.99	0	82335..84044	+	569	121602167	-	BARBAKC583_0073	-	heparinase II/III-like family protein
73	 43.29	+1	84215..85831	+	538	121602743	purH	BARBAKC583_0074	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
74	 39.87	0	85996..86148	+	50	121602557	-	BARBAKC583_0075	-	hypothetical protein
75	 42.01	0	86488..87294	-	268	121601878	-	BARBAKC583_0076	-	SurF1 family protein
76	 39.06	0	87569..87865	+	98	121602432	rpmB	BARBAKC583_0077	-	50S ribosomal protein L28
77	 39.82	0	87990..88652	+	220	121602178	-	BARBAKC583_0078	-	hypothetical protein
78	 42.77	0	88851..90746	-	631	121601803	cobT	BARBAKC583_0079	-	cobaltochelatase, CobT subunit
79	 42.65	0	90761..91747	-	328	121602689	cobS	BARBAKC583_0080	-	cobaltochelatase, CobS subunit
80	 38.00	0	92015..92635	-	206	121602240	-	BARBAKC583_0081	-	DnaJ domain-containing protein
81	 37.99	0	92751..93029	+	92	121602779	-	BARBAKC583_0082	-	BolA family protein
82	 44.69	+1	93072..94040	-	322	121602434	xerC	BARBAKC583_0083	-	site-specific tyrosine recombinase XerC
83	 34.43	-1	94043..94864	-	273	121601700	-	BARBAKC583_0084	-	SapC family protein
84	 41.15	0	94994..95569	+	191	121602541	rimM	BARBAKC583_0085	-	16S rRNA processing protein RimM
85	 47.93	+2	95619..96317	+	232	121601797	trmD	BARBAKC583_0086	-	tRNA (guanine-N1)-methyltransferase
86	 45.80	+1	96523..96963	+	146	121602787	rplS	BARBAKC583_0087	-	50S ribosomal protein L19
87	 41.29	0	97559..97960	+	133	121602258	sdhC	BARBAKC583_0088	-	succinate dehydrogenase, cytochrome b556 subunit
88	 33.33	-1	97979..98365	+	128	121602811	sdhD	BARBAKC583_0089	-	succinate dehydrogenase, hydrophobic membrane anchor protein
89	 46.21	+1	98370..100217	+	615	121602021	sdhA	BARBAKC583_0090	-	succinate dehydrogenase flavoprotein subunit
90	 42.56	0	100233..101012	+	259	121601659	sdhB	BARBAKC583_0091	-	succinate dehydrogenase iron-sulfur subunit
91	 44.79	+1	101601..102848	-	415	121602163	-	BARBAKC583_0092	-	2-octaprenyl-6-methoxyphenyl hydroxylase
92	 41.43	0	103019..105439	+	806	121601872	-	BARBAKC583_0093	-	FtsK/SpoIIIE family protein
93	 40.13	0	105736..106368	+	210	121602483	-	BARBAKC583_0094	-	LolA family protein
94	 40.20	0	106374..107189	+	271	121602111	xth1	BARBAKC583_0095	-	exodeoxyribonuclease III
95	 41.83	0	107648..108847	+	399	121602670	-	BARBAKC583_0096	-	putative macrolide-specific efflux protein MacA
96	 41.60	0	108876..110882	+	668	121602095	macB	BARBAKC583_0097	-	macrolide-specific ABC-type efflux carrier MacB
97	 38.10	0	111411..112019	-	202	121602686	-	BARBAKC583_0098	-	hypothetical protein
98	 38.87	0	112169..113143	-	324	121601779	-	BARBAKC583_0099	-	FtsX family protein
99	 43.48	+1	113136..113795	-	219	121602165	ftsE	BARBAKC583_0100	-	cell division ATP-binding protein FtsE
100	 42.32	0	113949..115907	-	652	121601882	acsA	BARBAKC583_0101	-	acetyl-CoA synthetase
101	 42.44	0	116070..116750	-	226	121602346	-	BARBAKC583_0102	-	hypothetical protein
102	 31.82	-1	116767..116898	-	43	121602148	-	BARBAKC583_0103	-	hypothetical protein
103	 45.36	+1	117102..119729	+	875	121602880	leuS	BARBAKC583_0104	-	leucyl-tRNA synthetase
104	 46.74	+1	119758..120294	+	178	121602608	-	BARBAKC583_0105	-	hypothetical protein
105	 40.83	0	120668..121321	-	217	121602658	-	BARBAKC583_0106	-	putative translaldolase
106	 40.00	0	121399..121563	+	54	121602039	-	BARBAKC583_0107	-	hypothetical protein
107	 49.02	+2	121855..124092	+	745	121601767	priA	BARBAKC583_0108	-	primosome assembly protein PriA
108	 39.94	0	124190..124855	+	221	121602320	-	BARBAKC583_0109	-	hypothetical protein
109	 30.26	-2	124862..125056	+	64	121602884	-	BARBAKC583_0110	-	hypothetical protein
110	 42.05	0	125149..125733	+	194	121602147	atpH	BARBAKC583_0111	-	ATP synthase F1, delta subunit
111	 43.16	+1	125733..127268	+	511	121602713	atpA	BARBAKC583_0112	-	F0F1 ATP synthase subunit alpha
112	 42.02	0	127285..128193	+	302	121601932	atpG	BARBAKC583_0113	-	F0F1 ATP synthase subunit gamma
113	 44.42	+1	128216..129829	+	537	121602257	atpD	BARBAKC583_0114	-	F0F1 ATP synthase subunit beta
114	 40.53	0	129877..130293	+	138	121601681	atpC	BARBAKC583_0115	-	ATP synthase F1, epsilon subunit
115	 40.80	0	130318..131937	+	539	121602382	-	BARBAKC583_0116	-	major facilitator transporter
116	 40.92	0	131954..132955	+	333	121601725	-	BARBAKC583_0117	-	MFP family transporter
117	 37.21	0	133242..133370	-	42	121602750	-	BARBAKC583_0118	-	hypothetical protein
118	 45.82	+1	133498..134754	+	418	121602019	ispG	BARBAKC583_0119	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
119	 45.18	+1	135152..136054	-	300	121601917	-	BARBAKC583_0120	-	polyprenyl synthetase
120	 39.61	0	136133..136849	+	238	121602618	mtgA	BARBAKC583_0121	-	monofunctional biosynthetic peptidoglycan transglycosylase
121	 45.70	+1	137075..137260	+	61	121601692	rpmF	BARBAKC583_0122	-	50S ribosomal protein L32
122	 40.24	0	137770..138348	-	192	121602125	-	BARBAKC583_0123	-	CarD family transcriptional regulator
123	 39.53	0	138644..138982	-	112	121602702	fdxA	BARBAKC583_0124	-	ferredoxin
124	 40.33	0	139004..140632	-	542	121602100	-	BARBAKC583_0125	-	MgpS
125	 41.89	0	141073..141984	+	303	121602584	rpoH2	BARBAKC583_0126	-	RNA polymerase factor sigma-32
126	 42.73	0	142085..143500	-	471	121601874	-	BARBAKC583_0127	-	M48 family peptidase
127	 45.13	+1	143768..144403	+	211	121601693	thiN	BARBAKC583_0128	-	thiamine pyrophosphokinase
128	 46.98	+1	144855..145235	+	126	121602244	-	BARBAKC583_0129	-	putative lipoprotein
129	 45.79	+1	145305..147134	+	609	121602193	-	BARBAKC583_0131	-	ABC transporter, ATP-binding protein
130	 39.53	0	147131..147388	-	85	121602617	-	BARBAKC583_0130	-	hypothetical protein
131	 28.89	-2	147458..147592	+	44	121602397	-	BARBAKC583_0132	-	hypothetical protein
132	 34.87	-1	147667..147861	+	64	121602475	-	BARBAKC583_0133	-	hypothetical protein
133	 42.08	0	147893..148258	+	121	121601910	-	BARBAKC583_0134	-	hypothetical protein
134	 36.46	0	148633..149016	-	127	121602313	-	BARBAKC583_0135	-	hypothetical protein
135	 39.31	0	149030..149347	-	105	121601776	-	BARBAKC583_0136	-	hypothetical protein
136	 44.68	+1	149603..151603	+	666	121602913	tkt	BARBAKC583_0137	-	transketolase
137	 44.05	+1	151605..152612	+	335	121602107	gap	BARBAKC583_0138	-	glyceraldehyde-3-phosphate dehydrogenase, type I
138	 36.84	0	152695..152808	+	37	121602374	-	BARBAKC583_0139	-	hypothetical protein
139	 45.55	+1	152911..154113	+	400	121602281	pgk	BARBAKC583_0140	-	phosphoglycerate kinase
140	 46.16	+1	154252..155280	+	342	121602527	fbaB	BARBAKC583_0141	-	fructose-bisphosphate aldolase, class I
141	 46.49	+1	155412..155525	-	37	121601636	-	BARBAKC583_0142	-	hypothetical protein
142	 49.21	+2	155866..155991	+	41	121602679	-	BARBAKC583_0143	-	hypothetical protein
143	 42.66	0	156268..157596	-	442	121601818	tolB	BARBAKC583_0144	-	translocation protein TolB
144	 50.13	+2	157638..159131	-	497	121602816	-	BARBAKC583_0145	-	TolA domain-containing protein
145	 40.40	0	159281..159733	-	150	121602114	tolR	BARBAKC583_0146	-	protein TolR
146	 39.12	0	159746..160453	-	235	121602265	tolQ	BARBAKC583_0147	-	protein TolQ
147	 42.18	0	160943..161383	-	146	121602851	ybgC	BARBAKC583_0148	-	tol-pal system-associated acyl-CoA thioesterase
148	 45.95	+1	161376..162485	-	369	121602504	ruvB	BARBAKC583_0149	-	Holliday junction DNA helicase B
149	 46.02	+1	162493..163146	-	217	121601945	ruvA	BARBAKC583_0150	-	Holliday junction DNA helicase motor protein
150	 46.83	+1	163151..163654	-	167	121602663	ruvC	BARBAKC583_0151	-	Holliday junction resolvase
151	 46.67	+1	163666..163800	+	44	121602093	-	BARBAKC583_0152	-	hypothetical protein
152	 42.00	0	164316..164834	-	172	121602318	-	BARBAKC583_0153	-	hypothetical protein
153	 39.75	0	165212..166318	-	368	121601764	-	BARBAKC583_0154	-	hypothetical protein
154	 41.15	0	166422..167099	+	225	121602143	-	BARBAKC583_0155	-	thiamine-phosphate pyrophosphorylase
155	 44.72	+1	167102..168199	+	365	121602881	-	BARBAKC583_0156	-	hypothetical protein
156	 36.84	0	168444..168557	+	37	121601855	-	BARBAKC583_0157	-	hypothetical protein
157	 41.71	0	168871..169443	+	190	121602398	efp	BARBAKC583_0158	-	elongation factor P
158	 45.96	+1	169447..170238	+	263	121602463	-	BARBAKC583_0159	-	inositol monophosphatase family protein
159	 43.55	+1	170500..172320	-	606	121601907	-	BARBAKC583_0160	-	ABC transporter, permease/ATP-binding protein
160	 41.89	0	172494..172715	+	73	121602080	rpmE	BARBAKC583_0161	-	50S ribosomal protein L31
161	 50.00	+2	173006..173119	-	37	121602809	-	BARBAKC583_0162	-	hypothetical protein
162	 45.92	+1	173273..174019	-	248	121602842	-	BARBAKC583_0163	-	hypothetical protein
163	 41.74	0	174562..175263	+	233	121602280	-	BARBAKC583_0164	-	hypothetical protein
164	 44.00	+1	175581..176105	+	174	121602322	pal	BARBAKC583_0165	-	peptidoglycan-associated lipoprotein
165	 37.98	0	176115..176243	-	42	121601840	-	BARBAKC583_0166	-	hypothetical protein
166	 43.87	+1	177161..179143	+	660	121602616	tilS	BARBAKC583_0167	-	tRNA(Ile)-lysidine synthetase
167	 45.93	+1	179267..181561	+	764	121602051	hflB	BARBAKC583_0168	-	ATP-dependent metallopeptidase HflB
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.