IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
917	 68.17	0	983320..985311	-	663	119897209	dctS	azo0918	-	two-component sensor kinase
918	 60.30	-1	985540..986544	+	334	119897210	dctP2	azo0919	-	c4-dicarboxylate-binding periplasmic protein
919	 63.23	-1	986612..987310	+	232	119897211	dctQ2	azo0920	-	putative TRAP-type C4-dicarboxylate transport system, small permease
920	 62.86	-1	987325..988611	+	428	119897212	dctM2	azo0921	-	putative TRAP-type C4-dicarboxylate transport system, large permease
921	 64.04	0	988762..989409	+	215	119897213	dedA	azo0922	-	DedA protein
922	 61.50	-1	989496..989921	+	141	119897214	ndk	azo0923	-	nucleoside diphosphate kinase
923	 64.98	0	990009..991136	+	375	119897215	-	azo0924	-	hypothetical protein
924	 68.63	0	991136..991951	+	271	119897216	pilF	azo0925	-	putative type 4 pilus biogenesis protein
925	 73.60	+1	991948..992856	+	302	119897217	-	azo0926	-	transcriptional regulator
926	 67.95	0	992856..994103	+	415	119897218	ispG	azo0927	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
927	 66.74	0	994138..995439	+	433	119897219	hisS	azo0928	-	histidyl-tRNA synthetase
928	 69.30	0	995426..996070	+	214	119897220	-	azo0929	-	hypothetical protein
929	 68.15	0	996074..997216	+	380	119897221	-	azo0930	-	hypothetical protein
930	 67.04	0	997232..998560	+	442	119897222	engA	azo0931	-	GTP-binding protein EngA
931	 58.44	-2	998667..998909	+	80	119897223	hfq	azo0932	-	RNA-binding regulatory protein
932	 65.44	0	998991..1000130	+	379	119897224	hflX1	azo0933	-	GTP-binding subunit of protease specific for phage lambda
933	 64.41	0	1000148..1001389	+	413	119897225	hflK	azo0934	-	putative Hflk protein
934	 61.34	-1	1001389..1002270	+	293	119897226	hflC	azo0935	-	hypothetical protein
935	 54.84	-2	1002278..1002463	+	61	119897227	-	azo0936	-	hypothetical protein
936	 68.66	0	1002471..1003625	+	384	119897228	hisZ	azo0937	-	ATP phosphoribosyltransferase regulatory subunit
937	 65.22	0	1003629..1004939	+	436	119897229	purA	azo0938	-	adenylosuccinate synthetase
938	 68.18	0	1005674..1008655	+	993	119897230	vacB	azo0939	-	exoribonuclease II
939	 70.46	0	1008648..1009412	+	254	119897231	-	azo0940	-	tRNA/rRNA methyltransferase
940	 69.82	0	1009579..1010880	+	433	119897232	-	azo0941	-	nitrate regulatory protein
941	 65.71	0	1011215..1012474	+	419	119897233	nasF	azo0942	-	nitrate transport system, periplasmic-binding protein
942	 68.27	0	1012491..1013423	+	310	119897234	nasE	azo0943	-	putative nitrate transport system, permease protein
943	 66.42	0	1013436..1014230	+	264	119897235	nasD	azo0944	-	putative nitrate transport system, ATP-binding protein
944	 72.55	+1	1014601..1015365	+	254	119897236	cobA1	azo0945	-	uroporphyrin-III C-methyltransferase
945	 69.15	0	1015380..1016627	+	415	119897237	nasC	azo0946	-	putative nitrate reductase small subunit
946	 73.23	+1	1016664..1019438	+	924	119897238	nasA	azo0947	-	nitrate reductase
947	 74.07	+1	1019477..1020664	+	395	119897239	-	azo0948	-	putative methyl-accepting chemotaxis protein
948	 76.29	+2	1020736..1021629	+	297	119897240	-	azo0949	-	hypothetical protein
949	 70.54	0	1021632..1023464	+	610	119897241	-	azo0950	-	GGEF/EAL/PAS/PAC-domain-containing protein
950	 66.94	0	1023516..1023875	+	119	119897242	-	azo0951	-	phosphomannose protein
951	 69.43	0	1024028..1024933	+	301	119897243	-	azo0952	-	hypothetical protein
952	 70.18	0	1024961..1025785	-	274	119897244	nfsA	azo0953	-	putative oxygen-insentive NADPH nitroreductase
953	 61.61	-1	1025891..1026424	-	177	119897245	isiB	azo0954	-	flavodoxin
954	 71.51	0	1026770..1027678	-	302	119897246	gufA	azo0955	-	putative cation transporter protein
955	 68.21	0	1027781..1029013	-	410	119897247	cfa1	azo0956	-	cyclopropane fatty acyl phospholipid synthase
956	 70.74	0	1029315..1031303	+	662	119897248	dnaX	azo0957	-	DNA polymerase III subunit tau
957	 62.42	-1	1031349..1031678	+	109	119897249	-	azo0958	-	hypothetical protein
958	 69.33	0	1031759..1032358	+	199	119897250	recR	azo0959	-	recombination protein RecR
959	 66.16	0	1032540..1033133	+	197	119897251	petA1	azo0960	-	ubiquinol-cytochrome c reductase iron-sulfur protein
960	 62.49	-1	1033137..1034405	+	422	119897252	petB	azo0961	-	ubiquinol-cytochrome c reductase cytochrome b protein
961	 63.89	0	1034402..1035157	+	251	119897253	petC	azo0962	-	putative ubiquinol-cytochrome c reductase cytochrome c1 protein
962	 60.13	-1	1035265..1035861	+	198	119897254	sspA2	azo0963	-	stringent starvation protein A
963	 64.40	0	1035915..1036355	+	146	119897255	sspB	azo0964	-	ClpXP protease specificity-enhancing factor
964	 68.30	0	1036339..1037562	-	407	119897256	-	azo0965	-	glycosyltransferase
965	 64.42	0	1037729..1038217	+	162	119897257	-	azo0966	-	hypothetical protein
966	 70.34	0	1038235..1039485	-	416	119897258	dadA1	azo0967	-	D-amino acid dehydrogenase small subunit
967	 64.67	0	1039663..1040664	+	333	119897259	cbbF	azo0968	-	fructose-1,6-bisphosphatase
968	 70.66	0	1040676..1042403	+	575	119897260	-	azo0969	-	outer membrane protein
969	 67.49	0	1042491..1043462	+	323	119897261	-	azo0970	-	hypothetical protein
970	 67.12	0	1043538..1044428	+	296	119897262	-	azo0971	-	ABC transporter permease
971	 68.68	0	1044430..1045224	+	264	119897263	-	azo0972	-	ABC transporter ATP-binding protein
972	 62.89	-1	1045436..1045726	+	96	119897264	groES1	azo0973	-	chaperonin GroES
973	 63.88	0	1045775..1047424	+	549	119897265	groEL	azo0974	-	chaperonin GroEL
974	 67.25	0	1047710..1048396	+	228	119897266	basR	azo0975	-	two-component response regulatory protein
975	 68.15	0	1048371..1049858	+	495	119897267	basS	azo0976	-	putative two-component system histidine kinase
976	 58.90	-2	1050037..1050345	+	102	119897268	-	azo0977	-	hypothetical protein
977	 65.21	0	1050342..1052060	+	572	119897269	actP	azo0978	-	acetate permease
978	 69.20	0	1052174..1052845	-	223	119897270	tctD	azo0979	-	transcriptional regulatory protein
979	 67.15	0	1053183..1054436	+	417	119897271	hemA	azo0980	-	glutamyl-tRNA reductase
980	 67.31	0	1054469..1055554	+	361	119897272	prfA	azo0981	-	peptide chain release factor 1
981	 67.03	0	1055551..1056387	+	278	119897273	hemK	azo0982	-	HemK protein
982	 62.35	-1	1056474..1056797	+	107	119897274	-	azo0983	-	hypothetical protein
983	 68.94	0	1056828..1057925	-	365	119897275	-	azo0984	-	hypothetical protein
984	 64.34	0	1057916..1058776	-	286	119897276	-	azo0985	-	hypothetical protein
985	 63.04	-1	1058789..1059091	-	100	119897277	-	azo0986	-	hypothetical protein
986	 66.25	0	1059121..1059837	-	238	119897278	-	azo0987	-	hypothetical protein
987	 67.13	0	1060017..1061303	-	428	119897279	-	azo0988	-	putative serine/threonine protein kinase
988	 67.91	0	1061310..1062752	-	480	119897280	argH	azo0989	-	argininosuccinate lyase
989	 66.37	0	1062841..1063866	+	341	119897281	algZ	azo0990	-	putative alginate biosynthesis protein AlgZ/FimS
990	 69.16	0	1063863..1064624	+	253	119897282	algR	azo0991	-	alginate biosynthesis regulatory protein AlgR
991	 69.35	0	1064654..1067407	-	917	119897283	ppc	azo0992	-	phosphoenolpyruvate carboxylase
992	 72.45	+1	1067713..1068663	+	316	119897284	hemC	azo0993	-	porphobilinogen deaminase
993	 72.06	+1	1068679..1069476	+	265	119897285	hemD	azo0994	-	HemD protein
994	 72.43	+1	1069486..1070682	+	398	119897286	hemX	azo0995	-	uroporphyrin-III C-methyltransferase
995	 71.50	0	1070695..1071894	+	399	119897287	hemY	azo0996	-	HemY protein
996	 71.94	0	1072050..1072769	+	239	119897288	glcC	azo0997	-	glc operon transcriptional activator
997	 69.67	0	1072863..1074362	+	499	119897289	glcD1	azo0998	-	glycolate oxidase subunit GlcD
998	 67.35	0	1074367..1074513	+	48	119897290	-	azo0999	-	hypothetical protein
999	 72.22	+1	1074510..1075571	+	353	119897291	glcE	azo1000	-	glycolate oxidase FAD binding subunit
1000	 69.48	0	1075575..1076819	+	414	119897292	glcF	azo1001	-	glycolate oxidase iron-sulfur subunit
1001	 66.28	0	1076945..1077721	+	258	119897293	-	azo1002	-	putative phosphoprotein phosphatase
1002	 68.98	0	1077900..1079021	+	373	119897294	pntAA	azo1003	-	NAD(P) transhydrogenase, subunit alpha part 1
1003	 65.37	0	1079035..1079343	+	102	119897295	pntAB	azo1004	-	NAD(P) transhydrogenase,subunit alpha part 2
1004	 66.38	0	1079340..1080719	+	459	119897296	pntB	azo1005	-	NAD(P) transhydrogenase, subunit beta
1005	 69.23	0	1080834..1081184	+	116	119897297	-	azo1006	-	hypothetical protein
1006	 70.40	0	1081178..1083613	-	811	119897298	-	azo1007	-	signaling protein
1007	 68.15	0	1083711..1085195	-	494	119897299	rhlE2	azo1008	-	putative ATP-dependent RNA helicase
1008	 69.04	0	1085393..1086487	-	364	119897300	-	azo1009	-	putative RNA 2'-O-ribose methyltransferase
1009	 67.90	0	1086606..1087658	+	350	119897301	tas	azo1010	-	oxidoreductase Tas
1010	 69.33	0	1087666..1088040	-	124	119897302	-	azo1011	-	hypothetical protein
1011	 68.82	0	1088233..1089531	+	432	119897303	ugpB	azo1012	-	putative glycerol-3-phosphate-binding periplasmic protein
1012	 70.40	0	1089536..1090285	+	249	119897304	ugpQ	azo1013	-	cytoplasmic glycerophosphodiester phosphodiesterase
1013	 63.65	-1	1090402..1091427	+	341	119897305	ispB	azo1014	-	octaprenyl-diphosphate synthase
1014	 70.41	0	1091631..1092566	+	311	119897306	-	azo1015	-	LysR family transcriptional regulator
1015	 66.75	0	1092645..1093793	+	382	119897307	lldA	azo1016	-	L-lactate dehydrogenase
1016	 63.09	-1	1093840..1094649	-	269	119897308	comL	azo1017	-	competence lipoprotein precursor
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.