IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
884	 68.87	0	947097..948500	+	467	119897176	murC	azo0885	-	UDP-N-acetylmuramate--L-alanine ligase
885	 68.52	0	948497..949411	+	304	119897177	ddl	azo0886	-	D-alanine--D-alanine ligase
886	 71.24	0	949404..950234	+	276	119897178	FtsQ	azo0887	-	putative cell division protein FtsQ
887	 66.59	0	950231..951460	+	409	119897179	FtsA	azo0888	-	cell division protein FtsA
888	 67.54	0	951602..952744	+	380	119897180	FtsZ	azo0889	-	cell division protein FtsZ
889	 66.02	0	952910..953833	+	307	119897181	lpxC	azo0890	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
890	 66.67	0	953868..954056	+	62	119897182	-	azo0891	-	hypothetical protein
891	 72.03	+1	954061..954489	-	142	119897183	-	azo0892	-	hypothetical protein
892	 64.65	0	954595..957324	+	909	119897184	secA	azo0893	-	preprotein translocase subunit SecA
893	 70.99	0	957401..958882	+	493	119897185	-	azo0894	-	GAF-domain-containing protein
894	 68.60	0	958968..960209	+	413	119897186	argJ	azo0895	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
895	 69.68	0	960324..961154	+	276	119897187	-	azo0896	-	putative phosphoprotein phosphatase
896	 71.76	0	961167..962186	+	339	119897188	-	azo0897	-	hypothetical protein
897	 68.71	0	962191..963855	-	554	119897189	-	azo0898	-	putative serine/threonine protein kinase
898	 69.73	0	963863..964384	-	173	119897190	-	azo0899	-	hypothetical protein
899	 65.10	0	964488..964871	-	127	119897191	apaG	azo0900	-	ApaG
900	 65.14	0	965057..966433	+	458	119897192	purB	azo0901	-	adenylosuccinate lyase
901	 65.09	0	966512..966829	+	105	119897193	-	azo0902	-	hypothetical protein
902	 63.67	-1	966923..967855	-	310	119897194	secF	azo0903	-	preprotein translocase subunit SecF
903	 67.73	0	967876..969750	-	624	119897195	secD	azo0904	-	preprotein translocase subunit SecD
904	 62.73	-1	969851..970180	-	109	119897196	yajC	azo0905	-	preprotein translocase subunit YajC
905	 67.86	0	970362..971201	+	279	119897197	-	azo0906	-	putative signal transduction protein
906	 66.22	0	971214..972326	-	370	119897198	tgt	azo0907	-	queuine tRNA-ribosyltransferase
907	 68.79	0	972316..973353	-	345	119897199	queA	azo0908	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
908	 68.19	0	973554..974405	-	283	119897200	nhaR	azo0909	-	LysR family transcriptional regulator
909	 66.37	0	974584..974925	+	113	119897201	-	azo0910	-	hypothetical protein
910	 61.26	-1	974987..975652	+	221	119897202	yccA	azo0911	-	carrier/transport protein
911	 65.97	0	975796..977517	+	573	119897203	rosB	azo0912	-	putative potassium/proton antiporter
912	 65.47	0	977524..978858	-	444	119897204	ytfL2	azo0913	-	hemolysin
913	 63.66	-1	979395..980357	+	320	119897205	terC	azo0914	-	putative tellurium resistance protein
914	 63.25	-1	980435..981400	+	321	119897206	accA	azo0915	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
915	 72.68	+1	981412..982758	+	448	119897207	tilS	azo0916	-	putative tRNA(Ile)-lysidine synthetase
916	 64.36	0	982714..983319	-	201	119897208	-	azo0917	-	two-component response regulator
917	 68.17	0	983320..985311	-	663	119897209	dctS	azo0918	-	two-component sensor kinase
918	 60.30	-1	985540..986544	+	334	119897210	dctP2	azo0919	-	c4-dicarboxylate-binding periplasmic protein
919	 63.23	-1	986612..987310	+	232	119897211	dctQ2	azo0920	-	putative TRAP-type C4-dicarboxylate transport system, small permease
920	 62.86	-1	987325..988611	+	428	119897212	dctM2	azo0921	-	putative TRAP-type C4-dicarboxylate transport system, large permease
921	 64.04	0	988762..989409	+	215	119897213	dedA	azo0922	-	DedA protein
922	 61.50	-1	989496..989921	+	141	119897214	ndk	azo0923	-	nucleoside diphosphate kinase
923	 64.98	0	990009..991136	+	375	119897215	-	azo0924	-	hypothetical protein
924	 68.63	0	991136..991951	+	271	119897216	pilF	azo0925	-	putative type 4 pilus biogenesis protein
925	 73.60	+1	991948..992856	+	302	119897217	-	azo0926	-	transcriptional regulator
926	 67.95	0	992856..994103	+	415	119897218	ispG	azo0927	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
927	 66.74	0	994138..995439	+	433	119897219	hisS	azo0928	-	histidyl-tRNA synthetase
928	 69.30	0	995426..996070	+	214	119897220	-	azo0929	-	hypothetical protein
929	 68.15	0	996074..997216	+	380	119897221	-	azo0930	-	hypothetical protein
930	 67.04	0	997232..998560	+	442	119897222	engA	azo0931	-	GTP-binding protein EngA
931	 58.44	-2	998667..998909	+	80	119897223	hfq	azo0932	-	RNA-binding regulatory protein
932	 65.44	0	998991..1000130	+	379	119897224	hflX1	azo0933	-	GTP-binding subunit of protease specific for phage lambda
933	 64.41	0	1000148..1001389	+	413	119897225	hflK	azo0934	-	putative Hflk protein
934	 61.34	-1	1001389..1002270	+	293	119897226	hflC	azo0935	-	hypothetical protein
935	 54.84	-2	1002278..1002463	+	61	119897227	-	azo0936	-	hypothetical protein
936	 68.66	0	1002471..1003625	+	384	119897228	hisZ	azo0937	-	ATP phosphoribosyltransferase regulatory subunit
937	 65.22	0	1003629..1004939	+	436	119897229	purA	azo0938	-	adenylosuccinate synthetase
938	 68.18	0	1005674..1008655	+	993	119897230	vacB	azo0939	-	exoribonuclease II
939	 70.46	0	1008648..1009412	+	254	119897231	-	azo0940	-	tRNA/rRNA methyltransferase
940	 69.82	0	1009579..1010880	+	433	119897232	-	azo0941	-	nitrate regulatory protein
941	 65.71	0	1011215..1012474	+	419	119897233	nasF	azo0942	-	nitrate transport system, periplasmic-binding protein
942	 68.27	0	1012491..1013423	+	310	119897234	nasE	azo0943	-	putative nitrate transport system, permease protein
943	 66.42	0	1013436..1014230	+	264	119897235	nasD	azo0944	-	putative nitrate transport system, ATP-binding protein
944	 72.55	+1	1014601..1015365	+	254	119897236	cobA1	azo0945	-	uroporphyrin-III C-methyltransferase
945	 69.15	0	1015380..1016627	+	415	119897237	nasC	azo0946	-	putative nitrate reductase small subunit
946	 73.23	+1	1016664..1019438	+	924	119897238	nasA	azo0947	-	nitrate reductase
947	 74.07	+1	1019477..1020664	+	395	119897239	-	azo0948	-	putative methyl-accepting chemotaxis protein
948	 76.29	+2	1020736..1021629	+	297	119897240	-	azo0949	-	hypothetical protein
949	 70.54	0	1021632..1023464	+	610	119897241	-	azo0950	-	GGEF/EAL/PAS/PAC-domain-containing protein
950	 66.94	0	1023516..1023875	+	119	119897242	-	azo0951	-	phosphomannose protein
951	 69.43	0	1024028..1024933	+	301	119897243	-	azo0952	-	hypothetical protein
952	 70.18	0	1024961..1025785	-	274	119897244	nfsA	azo0953	-	putative oxygen-insentive NADPH nitroreductase
953	 61.61	-1	1025891..1026424	-	177	119897245	isiB	azo0954	-	flavodoxin
954	 71.51	0	1026770..1027678	-	302	119897246	gufA	azo0955	-	putative cation transporter protein
955	 68.21	0	1027781..1029013	-	410	119897247	cfa1	azo0956	-	cyclopropane fatty acyl phospholipid synthase
956	 70.74	0	1029315..1031303	+	662	119897248	dnaX	azo0957	-	DNA polymerase III subunit tau
957	 62.42	-1	1031349..1031678	+	109	119897249	-	azo0958	-	hypothetical protein
958	 69.33	0	1031759..1032358	+	199	119897250	recR	azo0959	-	recombination protein RecR
959	 66.16	0	1032540..1033133	+	197	119897251	petA1	azo0960	-	ubiquinol-cytochrome c reductase iron-sulfur protein
960	 62.49	-1	1033137..1034405	+	422	119897252	petB	azo0961	-	ubiquinol-cytochrome c reductase cytochrome b protein
961	 63.89	0	1034402..1035157	+	251	119897253	petC	azo0962	-	putative ubiquinol-cytochrome c reductase cytochrome c1 protein
962	 60.13	-1	1035265..1035861	+	198	119897254	sspA2	azo0963	-	stringent starvation protein A
963	 64.40	0	1035915..1036355	+	146	119897255	sspB	azo0964	-	ClpXP protease specificity-enhancing factor
964	 68.30	0	1036339..1037562	-	407	119897256	-	azo0965	-	glycosyltransferase
965	 64.42	0	1037729..1038217	+	162	119897257	-	azo0966	-	hypothetical protein
966	 70.34	0	1038235..1039485	-	416	119897258	dadA1	azo0967	-	D-amino acid dehydrogenase small subunit
967	 64.67	0	1039663..1040664	+	333	119897259	cbbF	azo0968	-	fructose-1,6-bisphosphatase
968	 70.66	0	1040676..1042403	+	575	119897260	-	azo0969	-	outer membrane protein
969	 67.49	0	1042491..1043462	+	323	119897261	-	azo0970	-	hypothetical protein
970	 67.12	0	1043538..1044428	+	296	119897262	-	azo0971	-	ABC transporter permease
971	 68.68	0	1044430..1045224	+	264	119897263	-	azo0972	-	ABC transporter ATP-binding protein
972	 62.89	-1	1045436..1045726	+	96	119897264	groES1	azo0973	-	chaperonin GroES
973	 63.88	0	1045775..1047424	+	549	119897265	groEL	azo0974	-	chaperonin GroEL
974	 67.25	0	1047710..1048396	+	228	119897266	basR	azo0975	-	two-component response regulatory protein
975	 68.15	0	1048371..1049858	+	495	119897267	basS	azo0976	-	putative two-component system histidine kinase
976	 58.90	-2	1050037..1050345	+	102	119897268	-	azo0977	-	hypothetical protein
977	 65.21	0	1050342..1052060	+	572	119897269	actP	azo0978	-	acetate permease
978	 69.20	0	1052174..1052845	-	223	119897270	tctD	azo0979	-	transcriptional regulatory protein
979	 67.15	0	1053183..1054436	+	417	119897271	hemA	azo0980	-	glutamyl-tRNA reductase
980	 67.31	0	1054469..1055554	+	361	119897272	prfA	azo0981	-	peptide chain release factor 1
981	 67.03	0	1055551..1056387	+	278	119897273	hemK	azo0982	-	HemK protein
982	 62.35	-1	1056474..1056797	+	107	119897274	-	azo0983	-	hypothetical protein
983	 68.94	0	1056828..1057925	-	365	119897275	-	azo0984	-	hypothetical protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.