IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
557	 64.61	0	587265..587750	-	161	119896849	-	azo0558	-	hypothetical protein
558	 72.79	+1	587769..588176	-	135	119896850	-	azo0559	-	sigma-E factor regulatory protein
559	 67.61	0	588173..588700	-	175	119896851	nifX	azo0560	-	NifX protein
560	 69.10	0	588618..590012	-	464	119896852	nifN	azo0561	-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifN
561	 66.73	0	590023..591525	-	500	119896853	nifE	azo0562	-	nitrogenase iron-molybdenum cofactor biosynthesis protein NifE
562	 72.85	+1	591714..592715	-	333	119896854	-	azo0563	-	hypothetical protein
563	 74.09	+1	592764..593639	-	291	119896855	-	azo0564	-	hypothetical protein
564	 71.30	0	593892..597104	+	1070	119896856	morA	azo0565	-	GGDEF/EAL/PAS/PAC/GAF-domain-containing protein
565	 75.79	+1	597165..597449	+	94	119896857	-	azo0566	-	hypothetical protein
566	 70.55	0	597475..598143	-	222	119896858	-	azo0567	-	hypothetical protein
567	 73.55	+1	598310..599704	+	464	119896859	vsrA	azo0568	-	putative sensory box histidine kinase
568	 67.61	0	599710..600345	-	211	119896860	vsrD1	azo0569	-	DNA-binding response regulator
569	 74.39	+1	600348..601409	-	353	119896861	-	azo0570	-	hypothetical protein
570	 70.65	0	601871..602422	-	183	119896862	ruvC	azo0571	-	crossover junction endodeoxyribonuclease
571	 64.80	0	602457..602777	-	106	119896863	ybjQ	azo0572	-	hypothetical protein
572	 70.53	0	602808..603686	-	292	119896864	-	azo0573	-	hypothetical protein
573	 64.88	0	603781..604506	-	241	119896865	yebC	azo0574	-	hypothetical protein
574	 73.64	+1	604637..605281	+	214	119896866	-	azo0575	-	hypothetical protein
575	 68.72	0	605320..606831	+	503	119896867	-	azo0576	-	hypothetical protein
576	 71.38	0	606869..607759	-	296	119896868	gstR2	azo0577	-	LysR family transcriptional regulator
577	 73.22	+1	607889..609352	+	487	119896869	emrY	azo0578	-	multidrug resistence transmembrane protein
578	 68.86	0	609429..610385	+	318	119896870	-	azo0579	-	hypothetical protein
579	 72.62	+1	610477..612138	+	553	119896871	-	azo0580	-	putative methyl-accepting chemotaxis transducer
580	 72.83	+1	612146..613330	-	394	119896872	araJ	azo0581	-	putative transmembrane efflux precursor protein
581	 74.09	+1	613443..614654	-	403	119896873	-	azo0582	-	major facilitator superfamily permease
582	 72.46	+1	614751..615716	+	321	119896874	lysR	azo0583	-	LysR family transcriptional regulator
583	 67.87	0	615741..616574	-	277	119896875	metF	azo0584	-	5,10-methylenetetrahydrofolate reductase (FADH2
584	 70.06	0	616561..617238	-	225	119896876	tlyA	azo0585	-	hypothetical protein
585	 60.08	-1	617454..617696	-	80	119896877	-	azo0586	-	hypothetical protein
586	 64.40	0	617790..619199	-	469	119896878	acyH	azo0587	-	S-adenosyl-L-homocysteine hydrolase
587	 63.35	-1	619475..620047	+	190	119896879	-	azo0588	-	hypothetical protein
588	 66.75	0	620087..621253	-	388	119896880	metK	azo0589	-	S-adenosylmethionine synthetase
589	 72.14	+1	621534..622355	+	273	119896881	htrB	azo0590	-	lipid A biosynthesis lauroyl acyltransferase
590	 70.14	0	622384..623160	+	258	119896882	msbBa	azo0591	-	putative lipid A biosynthesis acyltransferase,truncated
591	 64.76	0	623157..623261	+	34	119896883	msbBb	azo0592	-	putative lipid A biosynthesis acyltransferase,truncated
592	 74.53	+1	623255..623521	-	88	119896884	-	azo0593	-	hypothetical protein
593	 69.78	0	623683..624516	+	277	119896885	dapF	azo0594	-	diaminopimelate epimerase
594	 68.65	0	624557..625210	+	217	119896886	-	azo0595	-	3',5'-cyclic-nucleotide phosphodiesterase
595	 71.49	0	625290..626201	+	303	119896887	xerC	azo0596	-	site-specific recombinase
596	 65.08	0	626345..626848	+	167	119896888	-	azo0597	-	hypothetical protein
597	 69.70	0	626914..628101	+	395	119896889	-	azo0598	-	SAM dependent methyl transferase
598	 71.23	0	628098..628448	-	116	119896890	-	azo0599	-	hypothetical protein
599	 76.71	+2	628448..628666	-	72	119896891	-	azo0600	-	hypothetical protein
600	 69.78	0	628671..629729	-	352	119896892	ruvB	azo0601	-	Holliday junction DNA helicase B
601	 69.33	0	629785..630384	-	199	119896893	ruvA	azo0602	-	Holliday junction DNA helicase motor protein
602	 69.79	0	630563..631267	+	234	119896894	-	azo0603	-	hypothetical protein
603	 70.95	0	631264..631590	+	108	119896895	-	azo0604	-	hypothetical protein
604	 70.59	0	631597..631851	-	84	119896896	-	azo0605	-	hypothetical protein
605	 68.57	0	631860..633851	-	663	119896897	feoB	azo0606	-	putative ferrous iron transport protein B
606	 66.08	0	634049..636247	+	732	119896898	-	azo0607	-	putative TonB-dependent receptor
607	 67.11	0	636324..637007	+	227	119896899	ybiX	azo0608	-	putative hydroxylase
608	 73.17	+1	637000..638121	+	373	119896900	gox	azo0609	-	(S)-2-hydroxy-acid oxidase
609	 73.42	+1	638132..639553	-	473	119896901	oprM2	azo0610	-	putative outer membrane efflux protein
610	 69.46	0	639568..641538	-	656	119896902	macB	azo0611	-	ATP-binding/permease fusion ABC transporter
611	 68.66	0	641535..642686	-	383	119896903	macA	azo0612	-	periplasmic component of efflux system
612	 65.95	0	642997..643413	-	138	119896904	exbD3	azo0613	-	biopolymer transport protein ExbD
613	 70.34	0	643413..644174	-	253	119896905	exbB2	azo0614	-	biopolymer transport protein ExbB
614	 75.20	+1	644177..644926	-	249	119896906	tonB1	azo0615	-	putative TonB protein
615	 55.35	-2	645213..645689	-	158	119896907	bfr2	azo0616	-	putative bacterioferritin
616	 67.90	0	645686..645928	-	80	119896908	bfd	azo0617	-	bacterioferritin-associated ferredoxin
617	 69.52	0	645969..646178	-	69	119896909	-	azo0618	-	putative hemin uptake protein
618	 69.43	0	646348..647070	+	240	119896910	-	azo0619	-	hypothetical protein
619	 72.44	+1	647080..647529	-	149	119896911	-	azo0620	-	hypothetical protein
620	 67.41	0	647516..648724	-	402	119896912	-	azo0621	-	hypothetical protein
621	 68.55	0	648721..651168	-	815	119896913	-	azo0622	-	putative signaling protein
622	 69.05	0	651269..652651	-	460	119896914	matA	azo0623	-	putative malonyl-CoA decarboxylase
623	 64.00	0	652780..653454	+	224	119896915	-	azo0624	-	PAS/PAC domain-containing protein
624	 66.43	0	653521..653943	+	140	119896916	-	azo0625	-	two-component system response regulator
625	 68.55	0	653963..654760	-	265	119896917	lgt	azo0626	-	prolipoprotein diacylglyceryl transferase
626	 70.93	0	654774..655454	-	226	119896918	yceH	azo0627	-	hypothetical protein
627	 71.55	0	655581..657689	+	702	119896919	-	azo0628	-	putative adenylate/guanylate cyclase
628	 69.85	0	657725..658321	-	198	119896920	-	azo0629	-	hypothetical protein
629	 65.77	0	658318..658761	-	147	119896921	-	azo0630	-	hypothetical protein
630	 69.10	0	658869..661868	+	999	119896922	-	azo0631	-	HD-domain-containing protein
631	 67.04	0	661937..663787	+	616	119896923	ilvD	azo0632	-	dihydroxy-acid dehydratase
632	 63.59	-1	663873..664067	+	64	119896924	-	azo0633	-	hypothetical protein
633	 60.61	-1	664076..664372	+	98	119896925	-	azo0634	-	hypothetical protein
634	 66.04	0	664722..665201	+	159	119896926	-	azo0635	-	hypothetical protein
635	 67.41	0	665191..665997	+	268	119896927	-	azo0636	-	hypothetical protein
636	 69.65	0	666063..666431	+	122	119896928	-	azo0637	-	hypothetical protein
637	 72.10	+1	666529..667926	+	465	119896929	-	azo0638	-	hypothetical protein
638	 68.61	0	668039..668347	+	102	119896930	-	azo0639	-	hypothetical protein
639	 72.26	+1	668355..669284	-	309	119896931	mntC1	azo0640	-	putative manganese transport system, periplasmic-binding protein
640	 71.53	0	669287..670171	-	294	119896932	mntB1	azo0641	-	putative manganese transport system, permease protein
641	 70.69	0	670168..670938	-	256	119896933	mntA1	azo0642	-	putative manganese transport system, ATP-asa protein
642	 75.44	+1	670947..671174	-	75	119896934	-	azo0643	-	hypothetical protein
643	 72.38	+1	671152..671676	-	174	119896935	-	azo0644	-	putative regulatory protein
644	 69.42	0	671714..672076	-	120	119896936	-	azo0645	-	hypothetical protein
645	 68.77	0	672312..674498	+	728	119896937	-	azo0646	-	toxin secretion ABC transporter permease and ATP-binding protein
646	 68.15	0	674498..675913	+	471	119896938	hylD	azo0647	-	HlyD family secretion protein
647	 72.06	+1	675910..676521	+	203	119896939	-	azo0648	-	LuxR family transcriptional regulator
648	 66.77	0	676646..679489	+	947	119896940	-	azo0649	-	hypothetical protein
649	 61.78	-1	679569..680795	+	408	119896941	-	azo0650	-	glycosyltransferase
650	 69.62	0	680822..681160	+	112	119896942	-	azo0651	-	hypothetical protein
651	 72.20	+1	681161..683074	-	637	119896943	-	azo0652	-	hypothetical protein
652	 71.65	0	683109..683831	-	240	119896944	-	azo0653	-	hypothetical protein
653	 69.58	0	684035..685477	+	480	119896945	aggA	azo0654	-	putative outer membrane efflux protein
654	 68.66	0	685558..689061	+	1167	119896946	-	azo0655	-	putative two-component sensor histidine kinase protein
655	 71.89	0	689058..690014	+	318	119896947	-	azo0656	-	LuxR family transcriptional regulator
656	 74.04	+1	691405..692367	+	320	119896948	-	azo0657	-	hypothetical protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.