IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3793	 70.89	0	4156109..4156321	+	70	119900085	hupI	azo3796	-	rubredoxin protein
3794	 74.07	+1	4156321..4156887	+	188	119900086	hupJ	azo3797	-	hydrogenase expression/formation protein
3795	 76.24	+2	4156888..4157994	+	368	119900087	hupK	azo3798	-	putative hydrogenase expression/formation protein HupK
3796	 69.28	0	4157987..4158331	+	114	119900088	hypA	azo3799	-	hydrogenase nickel inorporation protein hypA
3797	 70.45	0	4158470..4159393	+	307	119900089	hypB	azo3800	-	hydrogenase accessory protein HypB
3798	 73.54	+1	4159390..4161762	+	790	119900090	hypF	azo3801	-	hydrogenase maturation protein HypF
3799	 68.33	0	4161767..4162006	+	79	119900091	hypC	azo3802	-	hydrogenase assembly chaperon HypC
3800	 69.47	0	4162003..4163145	+	380	119900092	hypD	azo3803	-	hydrogenase expression/formation protein HypD
3801	 72.17	+1	4163214..4164266	+	350	119900093	hypE	azo3804	-	hydrogenase expression/formation protein hypE
3802	 69.82	0	4164280..4165737	+	485	119900094	hoxA	azo3805	-	hydrogenase transcriptional regulatory protein
3803	 69.36	0	4165753..4166049	-	98	119900095	-	azo3806	-	hypothetical protein
3804	 71.18	0	4166203..4167198	+	331	119900096	hoxB	azo3807	-	ferredoxin hydrogenase, small subunit
3805	 72.73	+1	4167356..4168807	+	483	119900097	hoxC	azo3808	-	ferredoxin hydrogenase, large subunit
3806	 69.91	0	4168926..4170437	+	503	119900098	-	azo3809	-	hypothetical protein
3807	 68.83	0	4170469..4171854	+	461	119900099	hoxJ	azo3810	-	hydrogen uptake histidine-kinase
3808	 65.86	0	4171861..4172355	-	164	119900100	ntaB	azo3811	-	nitrilotriacetate monooxygenase
3809	 74.21	+1	4172470..4173570	+	366	119900101	mutY	azo3812	-	putative A/G-specific adenine glycosylase
3810	 71.50	0	4173767..4174366	-	199	119900102	-	azo3813	-	ATP-dependent protease La
3811	 68.73	0	4174401..4175030	-	209	119900103	ubiX	azo3814	-	aromatic acid decarboxylase
3812	 68.84	0	4175247..4175798	+	183	119900104	-	azo3815	-	phasin
3813	 72.06	+1	4175897..4176934	-	345	119900105	-	azo3816	-	AraC family transcriptional regulator
3814	 71.23	0	4177099..4178040	+	313	119900106	-	azo3817	-	hypothetical protein
3815	 69.94	0	4178048..4179208	-	386	119900107	livK5	azo3818	-	putative leucine-specific binding protein
3816	 74.79	+1	4179274..4180221	-	315	119900108	livM6	azo3819	-	putative branched-chain amino acid transport permease
3817	 72.49	+1	4180301..4181158	-	285	119900109	-	azo3820	-	ABC transporter permease protein
3818	 71.57	0	4181166..4182143	-	325	119900110	ncd2	azo3821	-	putative 2-nitropropane dioxygenase
3819	 63.15	-1	4182309..4182734	+	141	119900111	mscL	azo3822	-	large-conductance mechanosensitive channel
3820	 69.04	0	4182759..4183517	-	252	119900112	ycbL	azo3823	-	hypothetical protein
3821	 70.58	0	4183561..4184352	-	263	119900113	imp	azo3824	-	putative inositol monophosphatase protein
3822	 68.23	0	4184498..4185523	+	341	119900114	fbpA2	azo3825	-	putative ferric transport system, periplasmic-binding protein
3823	 69.64	0	4185569..4186576	+	335	119900115	fbpC2	azo3826	-	Fe3+-transporting ATPase
3824	 69.75	0	4186656..4188308	+	550	119900116	-	azo3827	-	putative ferrric transport system, permease protein
3825	 69.37	0	4188333..4189109	+	258	119900117	glpR	azo3828	-	putative glycerol-3-phosphate regulon repressor
3826	 69.69	0	4189133..4190521	+	462	119900118	eutB	azo3829	-	ethanolamine ammonia-lyase large subunit
3827	 75.39	+1	4190532..4191356	+	274	119900119	eutC	azo3830	-	putative ethanolamine ammonia-lyase small subunit
3828	 66.10	0	4191496..4192371	+	291	119900120	-	azo3831	-	hypothetical protein
3829	 66.79	0	4192520..4193338	-	272	119900121	-	azo3832	-	ABC-type tungstate transport system, permease component
3830	 73.10	+1	4193453..4194556	+	367	119900122	-	azo3833	-	putative molybdenum-binding protein
3831	 73.06	+1	4194613..4195911	-	432	119900123	-	azo3834	-	hypothetical protein
3832	 73.48	+1	4195950..4197269	-	439	119900124	pgtC	azo3835	-	putative regulatory lipoprotein
3833	 68.63	0	4197290..4199275	-	661	119900125	-	azo3836	-	TonB-dependent receptor
3834	 71.59	0	4199407..4200564	-	385	119900126	modC1	azo3837	-	putative molybdenum transport system, ATP-binding protein
3835	 68.14	0	4200561..4201241	-	226	119900127	modB1	azo3838	-	putative molybdenum transport system permease protein
3836	 66.27	0	4201261..4202022	-	253	119900128	modA1	azo3839	-	putative molybdate transport system, periplasmic-binding protein
3837	 68.00	0	4202077..4202904	-	275	119900129	modE	azo3840	-	putative molybdenum transport protein
3838	 66.67	0	4203085..4203513	+	142	119900130	modG	azo3841	-	putative molybdenum-pterin-binding-protein
3839	 75.34	+1	4203575..4204612	+	345	119900131	modC2	azo3842	-	putative molybdate transport system ATP-binding protein
3840	 74.94	+1	4204593..4205462	-	289	119900132	-	azo3843	-	hypothetical protein
3841	 68.69	0	4205489..4207765	-	758	119900133	-	azo3844	-	putative TonB-dependent receptor
3842	 73.91	+1	4208004..4208693	-	229	119900134	modB2	azo3845	-	putative molybdenum ABC transporter permease protein
3843	 70.36	0	4208693..4209478	-	261	119900135	modA2	azo3846	-	putative molybdate transport system substrate-binding protein
3844	 70.54	0	4209537..4209923	-	128	119900136	-	azo3847	-	hypothetical protein
3845	 73.69	+1	4210313..4212361	+	682	119900137	yhjG	azo3848	-	outer membrane protein
3846	 69.13	0	4212375..4214444	-	689	119900138	-	azo3849	-	GGDEF/EAL/PAS/PAC-domain-containing protein
3847	 77.37	+2	4214513..4216465	-	650	119900139	recD	azo3850	-	DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
3848	 73.91	+1	4216462..4220187	-	1241	119900140	recB	azo3851	-	ATP-dependent exoDNAse beta subunit
3849	 67.97	0	4220373..4222526	+	717	119900141	irgA2	azo3852	-	putative TonB-dependent receptor
3850	 74.55	+1	4222614..4223768	+	384	119900142	-	azo3853	-	hypothetical protein
3851	 75.09	+1	4223747..4224304	+	185	119900143	ligT	azo3854	-	2'-5' RNA ligase
3852	 68.30	0	4224451..4226037	+	528	119900144	-	azo3855	-	putative alkaline phosphatase
3853	 70.75	0	4226137..4226919	+	260	119900145	-	azo3856	-	hypothetical protein
3854	 73.54	+1	4226936..4227793	-	285	119900146	paaG6	azo3857	-	putative enoyl-CoA hydratase paaG
3855	 74.39	+1	4227790..4231209	-	1139	119900147	recC	azo3858	-	DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease
3856	 71.44	0	4231262..4232182	-	306	119900148	yeaT	azo3859	-	LysR family transcriptional regulator
3857	 65.83	0	4232582..4233661	+	359	119900149	yeaU	azo3860	-	tartrate dehydrogenase
3858	 67.12	0	4233743..4233961	-	72	119900150	-	azo3861	-	hypothetical protein
3859	 69.09	0	4234040..4234657	-	205	119900151	-	azo3862	-	hypothetical protein
3860	 73.71	+1	4234851..4236512	+	553	119900152	-	azo3863	-	hypothetical protein
3861	 71.61	0	4236519..4236902	-	127	119900153	-	azo3864	-	cytochrome c family protein
3862	 68.64	0	4236962..4238632	-	556	119900154	exaA5	azo3865	-	putative quinoprotein ethanol dehydrogenase
3863	 66.89	0	4238668..4239555	-	295	119900155	-	azo3866	-	hypothetical protein
3864	 70.52	0	4239989..4240999	+	336	119900156	acoA2	azo3867	-	acetoin dehydrogenase, alpha subunit
3865	 66.57	0	4241016..4242053	+	345	119900157	acoB2	azo3868	-	acetoin dehydrogenase, beta subunit
3866	 68.29	0	4242264..4242509	+	81	119900158	-	azo3869	-	hypothetical protein
3867	 73.81	+1	4242513..4243226	+	237	119900159	-	azo3870	-	hypothetical protein
3868	 76.01	+1	4243226..4243996	+	256	119900160	-	azo3871	-	putative lipoate protein ligase
3869	 68.21	0	4244062..4244643	+	193	119900161	-	azo3872	-	hypothetical protein
3870	 66.60	0	4244733..4246307	+	524	119900162	-	azo3873	-	putative glucase dehydrogenase alpha subunit
3871	 66.50	0	4246369..4246983	+	204	119900163	-	azo3874	-	hypothetical protein
3872	 70.93	0	4247215..4249182	+	655	119900164	-	azo3875	-	sigma-54-dependent transcriptional regulator
3873	 65.85	0	4249321..4251393	+	690	119900165	-	azo3876	-	hypothetical protein
3874	 73.62	+1	4251398..4252432	+	344	119900166	-	azo3877	-	hypothetical protein
3875	 74.86	+1	4252437..4253474	+	345	119900167	-	azo3878	-	hypothetical protein
3876	 65.08	0	4253497..4254504	+	335	119900168	-	azo3879	-	hypothetical protein
3877	 68.88	0	4254527..4255069	+	180	119900169	-	azo3880	-	hypothetical protein
3878	 61.90	-1	4255159..4255536	+	125	119900170	-	azo3881	-	hypothetical protein
3879	 73.19	+1	4255546..4255974	+	142	119900171	-	azo3882	-	hypothetical protein
3880	 76.16	+2	4255979..4257190	+	403	119900172	-	azo3883	-	hypothetical protein
3881	 74.73	+1	4257210..4259045	+	611	119900173	-	azo3884	-	regulatory protein
3882	 69.91	0	4259097..4259867	+	256	119900174	-	azo3885	-	putative phosphoprotein phosphatase
3883	 70.18	0	4259941..4260594	+	217	119900175	-	azo3886	-	hypothetical protein
3884	 67.46	0	4260635..4261894	+	419	119900176	-	azo3887	-	hypothetical protein
3885	 72.35	+1	4261940..4263946	-	668	119900177	-	azo3888	-	putative serine/threonine kinase
3886	 75.07	+1	4264005..4264706	-	233	119900178	-	azo3889	-	hypothetical protein
3887	 69.13	0	4264709..4268281	-	1190	119900179	imcF	azo3890	-	ImcF-like protein
3888	 72.11	+1	4268313..4269617	-	434	119900180	ompA2	azo3891	-	hypothetical protein
3889	 70.41	0	4269682..4271016	-	444	119900181	impJ	azo3892	-	hypothetical protein
3890	 71.48	0	4271065..4271583	-	172	119900182	-	azo3893	-	hypothetical protein
3891	 71.00	0	4271852..4272913	+	353	119900183	sciA	azo3894	-	putative cytoplasmic protein
3892	 64.51	0	4272962..4273471	+	169	119900184	sciH	azo3895	-	putative cytoplasmic protein,SciH
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.