IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3745	 71.47	0	4104098..4104472	-	124	119900037	-	azo3748	-	hypothetical protein
3746	 73.60	+1	4104611..4105519	+	302	119900038	ampR	azo3749	-	LysR family transcriptional regulator
3747	 69.78	0	4105616..4106194	+	192	119900039	-	azo3750	-	isochorismatase family protein
3748	 74.56	+1	4106205..4107167	+	320	119900040	darR	azo3751	-	AraC family transcription regulator
3749	 70.57	0	4107175..4108071	-	298	119900041	-	azo3752	-	hypothetical protein
3750	 74.14	+1	4108137..4111802	-	1221	119900042	putA	azo3753	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
3751	 73.43	+1	4111993..4113042	-	349	119900043	-	azo3754	-	putative thiamine biosynthesis lipoprotein ApbE
3752	 69.59	0	4113039..4113995	-	318	119900044	gshB	azo3755	-	glutathione synthetase
3753	 67.75	0	4114008..4115303	-	431	119900045	gshA	azo3756	-	GshA protein
3754	 71.36	0	4115424..4116680	-	418	119900046	-	azo3757	-	modification methyltransferase
3755	 63.05	-1	4116808..4117332	+	174	119900047	dcrH3	azo3758	-	hypothetical protein
3756	 62.47	-1	4117384..4117836	-	150	119900048	-	azo3759	-	hemerythrin family protein
3757	 68.54	0	4118075..4119517	+	480	119900049	-	azo3760	-	hypothetical protein
3758	 75.54	+1	4119639..4120235	+	198	119900050	-	azo3761	-	hypothetical protein
3759	 70.06	0	4120286..4121464	+	392	119900051	-	azo3762	-	patatin-like protein
3760	 72.34	+1	4121479..4122924	+	481	119900052	-	azo3763	-	hypothetical protein
3761	 66.00	0	4122934..4123830	-	298	119900053	-	azo3764	-	hypothetical protein
3762	 70.29	0	4124278..4125519	+	413	119900054	ribA	azo3765	-	hypothetical protein
3763	 74.73	+1	4125568..4126857	+	429	119900055	-	azo3766	-	hypothetical protein
3764	 69.98	0	4126875..4127507	+	210	119900056	upp	azo3767	-	uracil phosphoribosyltransferase.
3765	 67.90	0	4127515..4129629	-	704	119900057	-	azo3768	-	putative catalase
3766	 71.79	0	4129784..4131070	+	428	119900058	codA	azo3769	-	cytosine deaminase
3767	 67.47	0	4131244..4131738	+	164	119900059	-	azo3770	-	hypothetical protein
3768	 65.96	0	4131848..4132270	+	140	119900060	fcbC2	azo3771	-	thioesterase
3769	 74.77	+1	4132342..4133625	+	427	119900061	-	azo3772	-	hypothetical protein
3770	 69.21	0	4133633..4134811	-	392	119900062	-	azo3773	-	hypothetical protein
3771	 72.88	+1	4134801..4136297	-	498	119900063	-	azo3774	-	putative serine/threonine protein kinase
3772	 69.25	0	4136601..4137917	+	438	119900064	-	azo3775	-	hypothetical protein
3773	 71.40	0	4137914..4138504	-	196	119900065	-	azo3776	-	hypothetical protein
3774	 67.58	0	4138598..4140025	+	475	119900066	-	azo3777	-	GGDEF family protein
3775	 71.14	0	4140029..4140520	+	163	119900067	staT	azo3778	-	putative streptothricin acetyltransferase
3776	 63.16	-1	4140608..4142233	+	541	119900068	ybiT	azo3779	-	ABC transporter ATP-binding protein
3777	 63.80	0	4142403..4142786	+	127	119900069	ptsL	azo3780	-	putative IIA component of sugar transport PTS system
3778	 67.41	0	4142798..4143067	+	89	119900070	ptsH	azo3781	-	putative phosphocarrier protein HPr
3779	 68.11	0	4143071..4144801	+	576	119900071	ptsI	azo3782	-	putative phosphoenolpyruvate-protein phosphotransferase
3780	 67.61	0	4145096..4146052	+	318	119900072	-	azo3783	-	hypothetical protein
3781	 63.66	-1	4146076..4146408	-	110	119900073	-	azo3784	-	hypothetical protein
3782	 68.97	0	4146462..4146809	-	115	119900074	-	azo3785	-	hypothetical protein
3783	 66.76	0	4146921..4148009	+	362	119900075	hupS	azo3786	-	ferredoxin hydrogenase, small chain
3784	 64.83	0	4148006..4149802	+	598	119900076	hupL	azo3787	-	ferredoxin hydrogenase, large chain
3785	 62.29	-1	4149947..4150654	+	235	119900077	hupC	azo3788	-	Ni/Fe-hydrogenase, B-type cytochrome subunit
3786	 73.62	+1	4150663..4151007	+	114	119900078	-	azo3789	-	hypothetical protein
3787	 68.70	0	4151089..4151679	+	196	119900079	-	azo3790	-	glutathione peroxidase
3788	 66.19	0	4151699..4153393	-	564	119900080	-	azo3791	-	ATPase
3789	 70.04	0	4153728..4154408	+	226	119900081	hupD	azo3792	-	hydrogenase expression/formation protein hupD
3790	 69.23	0	4154410..4154721	+	103	119900082	hupF	azo3793	-	putative hydrogenase expression/formation protein hupF
3791	 74.51	+1	4154718..4155176	+	152	119900083	hupG	azo3794	-	hydrogenase-1 operon protein hyaE
3792	 72.16	+1	4155192..4156064	+	290	119900084	hupH	azo3795	-	hydrogenase-1 operon protein hupH
3793	 70.89	0	4156109..4156321	+	70	119900085	hupI	azo3796	-	rubredoxin protein
3794	 74.07	+1	4156321..4156887	+	188	119900086	hupJ	azo3797	-	hydrogenase expression/formation protein
3795	 76.24	+2	4156888..4157994	+	368	119900087	hupK	azo3798	-	putative hydrogenase expression/formation protein HupK
3796	 69.28	0	4157987..4158331	+	114	119900088	hypA	azo3799	-	hydrogenase nickel inorporation protein hypA
3797	 70.45	0	4158470..4159393	+	307	119900089	hypB	azo3800	-	hydrogenase accessory protein HypB
3798	 73.54	+1	4159390..4161762	+	790	119900090	hypF	azo3801	-	hydrogenase maturation protein HypF
3799	 68.33	0	4161767..4162006	+	79	119900091	hypC	azo3802	-	hydrogenase assembly chaperon HypC
3800	 69.47	0	4162003..4163145	+	380	119900092	hypD	azo3803	-	hydrogenase expression/formation protein HypD
3801	 72.17	+1	4163214..4164266	+	350	119900093	hypE	azo3804	-	hydrogenase expression/formation protein hypE
3802	 69.82	0	4164280..4165737	+	485	119900094	hoxA	azo3805	-	hydrogenase transcriptional regulatory protein
3803	 69.36	0	4165753..4166049	-	98	119900095	-	azo3806	-	hypothetical protein
3804	 71.18	0	4166203..4167198	+	331	119900096	hoxB	azo3807	-	ferredoxin hydrogenase, small subunit
3805	 72.73	+1	4167356..4168807	+	483	119900097	hoxC	azo3808	-	ferredoxin hydrogenase, large subunit
3806	 69.91	0	4168926..4170437	+	503	119900098	-	azo3809	-	hypothetical protein
3807	 68.83	0	4170469..4171854	+	461	119900099	hoxJ	azo3810	-	hydrogen uptake histidine-kinase
3808	 65.86	0	4171861..4172355	-	164	119900100	ntaB	azo3811	-	nitrilotriacetate monooxygenase
3809	 74.21	+1	4172470..4173570	+	366	119900101	mutY	azo3812	-	putative A/G-specific adenine glycosylase
3810	 71.50	0	4173767..4174366	-	199	119900102	-	azo3813	-	ATP-dependent protease La
3811	 68.73	0	4174401..4175030	-	209	119900103	ubiX	azo3814	-	aromatic acid decarboxylase
3812	 68.84	0	4175247..4175798	+	183	119900104	-	azo3815	-	phasin
3813	 72.06	+1	4175897..4176934	-	345	119900105	-	azo3816	-	AraC family transcriptional regulator
3814	 71.23	0	4177099..4178040	+	313	119900106	-	azo3817	-	hypothetical protein
3815	 69.94	0	4178048..4179208	-	386	119900107	livK5	azo3818	-	putative leucine-specific binding protein
3816	 74.79	+1	4179274..4180221	-	315	119900108	livM6	azo3819	-	putative branched-chain amino acid transport permease
3817	 72.49	+1	4180301..4181158	-	285	119900109	-	azo3820	-	ABC transporter permease protein
3818	 71.57	0	4181166..4182143	-	325	119900110	ncd2	azo3821	-	putative 2-nitropropane dioxygenase
3819	 63.15	-1	4182309..4182734	+	141	119900111	mscL	azo3822	-	large-conductance mechanosensitive channel
3820	 69.04	0	4182759..4183517	-	252	119900112	ycbL	azo3823	-	hypothetical protein
3821	 70.58	0	4183561..4184352	-	263	119900113	imp	azo3824	-	putative inositol monophosphatase protein
3822	 68.23	0	4184498..4185523	+	341	119900114	fbpA2	azo3825	-	putative ferric transport system, periplasmic-binding protein
3823	 69.64	0	4185569..4186576	+	335	119900115	fbpC2	azo3826	-	Fe3+-transporting ATPase
3824	 69.75	0	4186656..4188308	+	550	119900116	-	azo3827	-	putative ferrric transport system, permease protein
3825	 69.37	0	4188333..4189109	+	258	119900117	glpR	azo3828	-	putative glycerol-3-phosphate regulon repressor
3826	 69.69	0	4189133..4190521	+	462	119900118	eutB	azo3829	-	ethanolamine ammonia-lyase large subunit
3827	 75.39	+1	4190532..4191356	+	274	119900119	eutC	azo3830	-	putative ethanolamine ammonia-lyase small subunit
3828	 66.10	0	4191496..4192371	+	291	119900120	-	azo3831	-	hypothetical protein
3829	 66.79	0	4192520..4193338	-	272	119900121	-	azo3832	-	ABC-type tungstate transport system, permease component
3830	 73.10	+1	4193453..4194556	+	367	119900122	-	azo3833	-	putative molybdenum-binding protein
3831	 73.06	+1	4194613..4195911	-	432	119900123	-	azo3834	-	hypothetical protein
3832	 73.48	+1	4195950..4197269	-	439	119900124	pgtC	azo3835	-	putative regulatory lipoprotein
3833	 68.63	0	4197290..4199275	-	661	119900125	-	azo3836	-	TonB-dependent receptor
3834	 71.59	0	4199407..4200564	-	385	119900126	modC1	azo3837	-	putative molybdenum transport system, ATP-binding protein
3835	 68.14	0	4200561..4201241	-	226	119900127	modB1	azo3838	-	putative molybdenum transport system permease protein
3836	 66.27	0	4201261..4202022	-	253	119900128	modA1	azo3839	-	putative molybdate transport system, periplasmic-binding protein
3837	 68.00	0	4202077..4202904	-	275	119900129	modE	azo3840	-	putative molybdenum transport protein
3838	 66.67	0	4203085..4203513	+	142	119900130	modG	azo3841	-	putative molybdenum-pterin-binding-protein
3839	 75.34	+1	4203575..4204612	+	345	119900131	modC2	azo3842	-	putative molybdate transport system ATP-binding protein
3840	 74.94	+1	4204593..4205462	-	289	119900132	-	azo3843	-	hypothetical protein
3841	 68.69	0	4205489..4207765	-	758	119900133	-	azo3844	-	putative TonB-dependent receptor
3842	 73.91	+1	4208004..4208693	-	229	119900134	modB2	azo3845	-	putative molybdenum ABC transporter permease protein
3843	 70.36	0	4208693..4209478	-	261	119900135	modA2	azo3846	-	putative molybdate transport system substrate-binding protein
3844	 70.54	0	4209537..4209923	-	128	119900136	-	azo3847	-	hypothetical protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.