IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3672	 73.90	+1	4035014..4035511	+	165	119899964	-	azo3675	-	hypothetical protein
3673	 68.52	0	4035537..4036184	-	215	119899965	nagL2	azo3676	-	maleylpyruvate isomerase
3674	 66.67	0	4036298..4037326	-	342	119899966	dctP6	azo3677	-	putative c4-dicarboxylate-binding periplasmic protein
3675	 68.54	0	4037367..4038380	-	337	119899967	-	azo3678	-	fumarylacetoacetate hydrolase family protein
3676	 63.86	0	4038439..4038972	-	177	119899968	-	azo3679	-	glyoxalase-family protein
3677	 62.67	-1	4038995..4039219	-	74	119899969	-	azo3680	-	hypothetical protein
3678	 68.17	0	4039232..4040899	-	555	119899970	mhpA	azo3681	-	hypothetical protein
3679	 65.22	0	4040974..4041939	-	321	119899971	-	azo3682	-	putative cyclase
3680	 70.18	0	4042117..4042941	+	274	119899972	gylR	azo3683	-	IclR family transcriptional regulator
3681	 65.71	0	4043053..4043889	+	278	119899973	-	azo3684	-	putative periplasmic binding protein
3682	 70.36	0	4043889..4047515	+	1208	119899974	-	azo3685	-	putative hybrid sensor and regulator protein
3683	 69.54	0	4047603..4048715	+	370	119899975	rpfG	azo3686	-	response regulator
3684	 68.71	0	4048737..4049372	-	211	119899976	cc43	azo3687	-	putative cytochrome c4
3685	 72.78	+1	4049428..4049787	-	119	119899977	-	azo3688	-	hypothetical protein
3686	 72.99	+1	4049799..4050842	-	347	119899978	murB	azo3689	-	UDP-N-acetylmuramate dehydrogenase
3687	 70.10	0	4050942..4051349	-	135	119899979	-	azo3690	-	hypothetical protein
3688	 70.80	0	4051624..4053654	-	676	119899980	-	azo3691	-	putative methyl-accepting chemotaxis transducer
3689	 73.54	+1	4053784..4054350	+	188	119899981	-	azo3692	-	putative N-acetyltransferase
3690	 73.11	+1	4054347..4055573	+	408	119899982	-	azo3693	-	hypothetical protein
3691	 73.66	+1	4055667..4055852	+	61	119899983	-	azo3694	-	hypothetical protein
3692	 68.83	0	4056007..4057344	-	445	119899984	trpS	azo3695	-	tryptophanyl-tRNA synthetase
3693	 69.51	0	4057400..4057786	-	128	119899985	-	azo3696	-	hypothetical protein
3694	 72.99	+1	4057811..4058158	-	115	119899986	-	azo3697	-	hypothetical protein
3695	 71.40	0	4058405..4058953	+	182	119899987	-	azo3698	-	hypothetical protein
3696	 70.79	0	4058961..4060172	+	403	119899988	-	azo3699	-	hypothetical protein
3697	 65.35	0	4060198..4060578	-	126	119899989	trxC2	azo3700	-	thioredoxin-disulfide reductase
3698	 62.09	-1	4060726..4061031	+	101	119899990	-	azo3701	-	hypothetical protein
3699	 68.64	0	4061111..4061821	+	236	119899991	-	azo3702	-	hypothetical protein
3700	 69.70	0	4061834..4062295	-	153	119899992	-	azo3703	-	hypothetical protein
3701	 70.49	0	4062391..4063305	+	304	119899993	-	azo3704	-	hypothetical protein
3702	 70.61	0	4063257..4064321	-	354	119899994	gapR	azo3705	-	AraC family transcriptional regulator
3703	 69.56	0	4064470..4065540	+	356	119899995	-	azo3706	-	hypothetical protein
3704	 59.94	-1	4065556..4065882	-	108	119899996	-	azo3707	-	hypothetical protein
3705	 69.59	0	4065983..4066393	-	136	119899997	-	azo3708	-	dioxygenase-family protein
3706	 65.34	0	4066490..4066942	-	150	119899998	-	azo3709	-	hypothetical protein
3707	 68.82	0	4067068..4067532	-	154	119899999	-	azo3710	-	acetyltransferase
3708	 66.13	0	4067656..4068402	-	248	119900000	-	azo3711	-	hypothetical protein
3709	 58.90	-2	4068452..4068979	-	175	119900001	-	azo3712	-	hypothetical protein
3710	 60.98	-1	4069022..4069390	-	122	119900002	bleO	azo3713	-	putative bleomycin resistance protein
3711	 59.60	-1	4069873..4070424	-	183	119900003	-	azo3714	-	acetyltransferase protein
3712	 53.43	-2	4070525..4070932	-	135	119900004	-	azo3715	-	hypothetical protein
3713	 54.14	-2	4071043..4071537	-	164	119900005	-	azo3716	-	hypothetical protein
3714	 62.67	-1	4071620..4071769	-	49	119900006	-	azo3717	-	hypothetical protein
3715	 58.16	-2	4071881..4072303	-	140	119900007	-	azo3718	-	hypothetical protein
3716	 49.07	-2	4072411..4072626	-	71	119900008	-	azo3719	-	hypothetical protein
3717	 63.58	-1	4072842..4073585	+	247	119900009	-	azo3720	-	transposase
3718	 68.33	0	4073607..4073966	+	119	119900010	-	azo3721	-	transposase
3719	 49.95	-2	4076853..4077803	-	316	119900011	-	azo3722	-	hypothetical protein
3720	 55.68	-2	4077851..4078369	-	172	119900012	-	azo3723	-	hypothetical protein
3721	 63.66	-1	4078566..4079330	+	254	119900013	-	azo3724	-	truncated integrase/recombinase
3722	 65.17	0	4079327..4079527	+	66	119900014	-	azo3725	-	integrase
3723	 66.59	0	4079534..4083235	-	1233	119900015	metH	azo3726	-	B12-dependent methionine synthase
3724	 68.30	0	4083455..4084066	-	203	119900016	-	azo3727	-	hypothetical protein
3725	 65.24	0	4084068..4084556	-	162	119900017	-	azo3728	-	lipoprotein
3726	 68.00	0	4084668..4085792	+	374	119900018	livK3	azo3729	-	leucine-specific binding protein
3727	 65.59	0	4086174..4087289	+	371	119900019	livK4	azo3730	-	leucine-specific binding protein
3728	 65.81	0	4087402..4088334	+	310	119900020	livH	azo3731	-	ABC transporter permease protein
3729	 66.03	0	4088347..4089444	+	365	119900021	livM5	azo3732	-	putative branched-chain amino acid transport permease
3730	 66.80	0	4089441..4090214	+	257	119900022	livG2	azo3733	-	ABC transporter ATP-binding protein
3731	 68.57	0	4090204..4090938	+	244	119900023	-	azo3734	-	ABC transporter ATP-binding protein
3732	 71.18	0	4090917..4092113	-	398	119900024	bcr2	azo3735	-	putative bicyclomycin resistance protein
3733	 74.00	+1	4092166..4093665	-	499	119900025	-	azo3736	-	hypothetical protein
3734	 67.46	0	4093748..4093999	-	83	119900026	-	azo3737	-	putative secreted protein
3735	 62.62	-1	4094284..4095024	+	246	119900027	-	azo3738	-	hypothetical protein
3736	 62.83	-1	4095083..4095421	+	112	119900028	glnK	azo3739	-	PII-like signal transmitter protein GlnK
3737	 67.24	0	4095436..4096842	+	468	119900029	amtB	azo3740	-	ammonium transporter
3738	 64.78	0	4097017..4097757	+	246	119900030	ompW	azo3741	-	outer membrane protein precursor
3739	 64.50	0	4097840..4098715	-	291	119900031	purU	azo3742	-	formyltetrahydrofolate deformylase
3740	 62.91	-1	4098817..4099428	-	203	119900032	thrH	azo3743	-	phosphoserine phosphatase
3741	 66.09	0	4099596..4100801	+	401	119900033	-	azo3744	-	HD-domain-containing protein
3742	 70.81	0	4100816..4102747	-	643	119900034	yheS	azo3745	-	ABC transporter ATP-binding protein
3743	 75.16	+1	4102815..4103438	+	207	119900035	-	azo3746	-	hypothetical protein
3744	 68.98	0	4103463..4104068	-	201	119900036	-	azo3747	-	2-hydroxychromene-2-carboxylate isomerase family protein
3745	 71.47	0	4104098..4104472	-	124	119900037	-	azo3748	-	hypothetical protein
3746	 73.60	+1	4104611..4105519	+	302	119900038	ampR	azo3749	-	LysR family transcriptional regulator
3747	 69.78	0	4105616..4106194	+	192	119900039	-	azo3750	-	isochorismatase family protein
3748	 74.56	+1	4106205..4107167	+	320	119900040	darR	azo3751	-	AraC family transcription regulator
3749	 70.57	0	4107175..4108071	-	298	119900041	-	azo3752	-	hypothetical protein
3750	 74.14	+1	4108137..4111802	-	1221	119900042	putA	azo3753	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
3751	 73.43	+1	4111993..4113042	-	349	119900043	-	azo3754	-	putative thiamine biosynthesis lipoprotein ApbE
3752	 69.59	0	4113039..4113995	-	318	119900044	gshB	azo3755	-	glutathione synthetase
3753	 67.75	0	4114008..4115303	-	431	119900045	gshA	azo3756	-	GshA protein
3754	 71.36	0	4115424..4116680	-	418	119900046	-	azo3757	-	modification methyltransferase
3755	 63.05	-1	4116808..4117332	+	174	119900047	dcrH3	azo3758	-	hypothetical protein
3756	 62.47	-1	4117384..4117836	-	150	119900048	-	azo3759	-	hemerythrin family protein
3757	 68.54	0	4118075..4119517	+	480	119900049	-	azo3760	-	hypothetical protein
3758	 75.54	+1	4119639..4120235	+	198	119900050	-	azo3761	-	hypothetical protein
3759	 70.06	0	4120286..4121464	+	392	119900051	-	azo3762	-	patatin-like protein
3760	 72.34	+1	4121479..4122924	+	481	119900052	-	azo3763	-	hypothetical protein
3761	 66.00	0	4122934..4123830	-	298	119900053	-	azo3764	-	hypothetical protein
3762	 70.29	0	4124278..4125519	+	413	119900054	ribA	azo3765	-	hypothetical protein
3763	 74.73	+1	4125568..4126857	+	429	119900055	-	azo3766	-	hypothetical protein
3764	 69.98	0	4126875..4127507	+	210	119900056	upp	azo3767	-	uracil phosphoribosyltransferase.
3765	 67.90	0	4127515..4129629	-	704	119900057	-	azo3768	-	putative catalase
3766	 71.79	0	4129784..4131070	+	428	119900058	codA	azo3769	-	cytosine deaminase
3767	 67.47	0	4131244..4131738	+	164	119900059	-	azo3770	-	hypothetical protein
3768	 65.96	0	4131848..4132270	+	140	119900060	fcbC2	azo3771	-	thioesterase
3769	 74.77	+1	4132342..4133625	+	427	119900061	-	azo3772	-	hypothetical protein
3770	 69.21	0	4133633..4134811	-	392	119900062	-	azo3773	-	hypothetical protein
3771	 72.88	+1	4134801..4136297	-	498	119900063	-	azo3774	-	putative serine/threonine protein kinase
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.