IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3592	 64.30	0	3945793..3948288	-	831	119899884	-	azo3595	-	hypothetical protein
3593	 62.20	-1	3948285..3949694	-	469	119899885	wzt	azo3596	-	putative polysaccharide export transport system ATP-binding protein
3594	 61.85	-1	3949684..3950472	-	262	119899886	wzm	azo3597	-	putative permease component of an ABC polysaccharide exporter
3595	 63.64	-1	3950578..3952557	-	659	119899887	-	azo3598	-	hypothetical protein
3596	 61.85	-1	3952636..3953631	-	331	119899888	fcl2	azo3599	-	putative GDP-fucose synthetase
3597	 68.12	0	3953917..3956673	-	918	119899889	polA	azo3600	-	DNA polymerase I
3598	 62.93	-1	3956755..3957477	+	240	119899890	-	azo3601	-	hypothetical protein
3599	 68.52	0	3957597..3957920	+	107	119899891	-	azo3602	-	hypothetical protein
3600	 70.41	0	3957899..3958459	+	186	119899892	-	azo3603	-	hypothetical protein
3601	 70.34	0	3958480..3959433	+	317	119899893	thrB	azo3604	-	homoserine kinase
3602	 71.73	0	3959528..3960298	+	256	119899894	-	azo3605	-	hypothetical protein
3603	 65.89	0	3960306..3961076	+	256	119899895	-	azo3606	-	hypothetical protein
3604	 71.49	0	3961057..3961740	+	227	119899896	nadD	azo3607	-	nicotinate-nucleotide adenylyltransferase
3605	 63.66	-1	3961760..3962125	+	121	119899897	-	azo3608	-	hypothetical protein
3606	 72.40	+1	3962122..3962592	+	156	119899898	-	azo3609	-	SPOUT methyltransferase superfamily protein
3607	 67.60	0	3962595..3963128	+	177	119899899	def2	azo3610	-	peptide deformylase
3608	 69.24	0	3963195..3963815	+	206	119899900	-	azo3611	-	Maf-like protein
3609	 64.68	0	3963871..3965382	+	503	119899901	cafA	azo3612	-	putative ribonuclease
3610	 72.20	+1	3965391..3966347	+	318	119899902	menA	azo3613	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3611	 67.76	0	3966362..3966727	-	121	119899903	-	azo3614	-	hypothetical protein
3612	 69.32	0	3966875..3967591	+	238	119899904	ompR3	azo3615	-	DNA-binding response regulator
3613	 72.75	+1	3967591..3968691	+	366	119899905	envZ3	azo3616	-	putative sensor histidine kinase
3614	 67.71	0	3968809..3969477	+	222	119899906	-	azo3617	-	putative calcium binding protein
3615	 72.34	+1	3969509..3970477	-	322	119899907	gcvA	azo3618	-	glycine cleavage system transcriptional activator
3616	 67.82	0	3970592..3970765	+	57	119899908	-	azo3619	-	hypothetical protein
3617	 67.44	0	3970934..3971842	-	302	119899909	-	azo3620	-	putative adenylate/guanylate cyclase
3618	 68.06	0	3971984..3972556	-	190	119899910	tag	azo3621	-	DNA-3-methyladenine glycosidase I
3619	 68.54	0	3972582..3973490	-	302	119899911	ptxR	azo3622	-	LysR family transcriptional regulator
3620	 66.13	0	3973580..3974692	+	370	119899912	adhC	azo3623	-	alcohol dehydrogenase classIII
3621	 69.71	0	3974733..3975587	+	284	119899913	-	azo3624	-	esterase
3622	 72.57	+1	3975594..3976508	-	304	119899914	-	azo3625	-	hypothetical protein
3623	 69.36	0	3976698..3977960	+	420	119899915	-	azo3626	-	chaperon protein
3624	 72.31	+1	3978018..3978974	-	318	119899916	-	azo3627	-	hypothetical protein
3625	 61.64	-1	3979292..3979768	+	158	119899917	-	azo3628	-	hypothetical protein
3626	 70.27	0	3979900..3980787	-	295	119899918	crgA	azo3629	-	LysR family transcriptional regulator
3627	 71.13	0	3980888..3982096	+	402	119899919	ydeA	azo3630	-	putative transmembrane efflux protein
3628	 68.77	0	3982119..3982925	+	268	119899920	yafB	azo3631	-	2,5-diketo-D-gluconate reductase B
3629	 71.66	0	3982978..3984780	+	600	119899921	-	azo3632	-	ABC transporter permease and ATP-binding protein
3630	 67.96	0	3985096..3985944	+	282	119899922	-	azo3633	-	hypothetical protein
3631	 69.76	0	3986061..3988160	-	699	119899923	-	azo3634	-	D-(-)-3-hydroxybutyrate oligomer hydrolase
3632	 65.75	0	3988511..3989053	+	180	119899924	-	azo3635	-	acetyltransferase
3633	 67.10	0	3989120..3990949	-	609	119899925	glmS	azo3636	-	glucosamine-fructose-6-phosphate aminotransferase
3634	 69.17	0	3990992..3992350	-	452	119899926	glmU	azo3637	-	UDP-N-acetylglucosamine pyrophosphorylase / diamine N-acetyltransferase
3635	 66.45	0	3992536..3993945	+	469	119899927	pta	azo3638	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
3636	 69.70	0	3993942..3995129	+	395	119899928	ackA	azo3639	-	acetate kinase
3637	 67.97	0	3995147..3995914	-	255	119899929	-	azo3640	-	hypothetical protein
3638	 66.87	0	3996223..3997689	-	488	119899930	gltD	azo3641	-	glutamate synthase subunit beta
3639	 65.70	0	3997694..4002367	-	1557	119899931	gltB	azo3642	-	ferredoxin-dependent glutamate synthase
3640	 65.18	0	4002629..4003768	-	379	119899932	-	azo3643	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
3641	 64.73	0	4003759..4004841	-	360	119899933	aroB	azo3644	-	3-dehydroquinate synthase
3642	 62.20	-1	4004829..4005365	-	178	119899934	aroK	azo3645	-	shikimate kinase
3643	 61.58	-1	4005442..4007565	-	707	119899935	pilQ	azo3646	-	type 4 fimbrial biogenesis protein
3644	 61.63	-1	4007562..4008077	-	171	119899936	pilP	azo3647	-	putative type 4 fimbrial biogenesis protein
3645	 60.74	-1	4008074..4008748	-	224	119899937	pilO	azo3648	-	type 4 fimbrial biogenesis protein
3646	 60.33	-1	4008745..4009344	-	199	119899938	pilN	azo3649	-	type 4 fimbrial biogenesis protein
3647	 62.58	-1	4009341..4010417	-	358	119899939	pilM	azo3650	-	type 4 fimbrial biogenesis protein
3648	 67.21	0	4010609..4012981	+	790	119899940	mrcA	azo3651	-	penicillin-binding protein 1A
3649	 64.55	0	4012971..4013348	-	125	119899941	cyaY	azo3652	-	putative CyaY protein
3650	 69.59	0	4013347..4013517	+	56	119899942	-	azo3653	-	hypothetical protein
3651	 68.16	0	4013514..4014788	+	424	119899943	lysA2	azo3654	-	LysA2 protein
3652	 68.68	0	4014811..4015158	-	115	119899944	-	azo3655	-	hypothetical protein
3653	 73.48	+1	4015219..4016685	+	488	119899945	dacB	azo3656	-	Serine-type D-Ala-D-Ala carboxypeptidase
3654	 66.67	0	4016702..4017118	-	138	119899946	-	azo3657	-	hypothetical protein
3655	 66.40	0	4017168..4018658	-	496	119899947	yigC	azo3658	-	3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec
3656	 68.63	0	4018668..4019480	-	270	119899948	pyrF	azo3659	-	orotidine 5'-phosphate decarboxylase
3657	 71.06	0	4019543..4020316	-	257	119899949	npd2	azo3660	-	NAD-dependent deacetylase
3658	 70.24	0	4020405..4022477	-	690	119899950	-	azo3661	-	molybdopterin oxidoreductase
3659	 69.32	0	4022532..4023209	-	225	119899951	-	azo3662	-	hypothetical protein
3660	 67.71	0	4023187..4023855	-	222	119899952	pyrE	azo3663	-	orotate phosphoribosyltransferase
3661	 66.16	0	4023919..4024701	+	260	119899953	xthA2	azo3664	-	exodeoxyribonuclease III
3662	 70.30	0	4024848..4027106	+	752	119899954	-	azo3665	-	putative signaling protein
3663	 70.15	0	4027103..4028941	+	612	119899955	-	azo3666	-	putative sensor histidine kinase
3664	 67.31	0	4029038..4029346	+	102	119899956	-	azo3667	-	hypothetical protein
3665	 70.31	0	4029352..4029735	+	127	119899957	-	azo3668	-	hypothetical protein
3666	 75.54	+1	4029732..4030103	+	123	119899958	-	azo3669	-	hypothetical protein
3667	 68.28	0	4030246..4030803	+	185	119899959	hpt	azo3670	-	hypoxanthine-guanine phosphoribosyltransferase
3668	 68.75	0	4030814..4031149	+	111	119899960	-	azo3671	-	hypothetical protein
3669	 73.13	+1	4031270..4031950	+	226	119899961	qseB2	azo3672	-	DNA-binding response regulator
3670	 72.61	+1	4032106..4033452	+	448	119899962	qseC2	azo3673	-	two-component system histidine kinase
3671	 69.25	0	4033530..4034963	+	477	119899963	mucD4	azo3674	-	serine protease MucD
3672	 73.90	+1	4035014..4035511	+	165	119899964	-	azo3675	-	hypothetical protein
3673	 68.52	0	4035537..4036184	-	215	119899965	nagL2	azo3676	-	maleylpyruvate isomerase
3674	 66.67	0	4036298..4037326	-	342	119899966	dctP6	azo3677	-	putative c4-dicarboxylate-binding periplasmic protein
3675	 68.54	0	4037367..4038380	-	337	119899967	-	azo3678	-	fumarylacetoacetate hydrolase family protein
3676	 63.86	0	4038439..4038972	-	177	119899968	-	azo3679	-	glyoxalase-family protein
3677	 62.67	-1	4038995..4039219	-	74	119899969	-	azo3680	-	hypothetical protein
3678	 68.17	0	4039232..4040899	-	555	119899970	mhpA	azo3681	-	hypothetical protein
3679	 65.22	0	4040974..4041939	-	321	119899971	-	azo3682	-	putative cyclase
3680	 70.18	0	4042117..4042941	+	274	119899972	gylR	azo3683	-	IclR family transcriptional regulator
3681	 65.71	0	4043053..4043889	+	278	119899973	-	azo3684	-	putative periplasmic binding protein
3682	 70.36	0	4043889..4047515	+	1208	119899974	-	azo3685	-	putative hybrid sensor and regulator protein
3683	 69.54	0	4047603..4048715	+	370	119899975	rpfG	azo3686	-	response regulator
3684	 68.71	0	4048737..4049372	-	211	119899976	cc43	azo3687	-	putative cytochrome c4
3685	 72.78	+1	4049428..4049787	-	119	119899977	-	azo3688	-	hypothetical protein
3686	 72.99	+1	4049799..4050842	-	347	119899978	murB	azo3689	-	UDP-N-acetylmuramate dehydrogenase
3687	 70.10	0	4050942..4051349	-	135	119899979	-	azo3690	-	hypothetical protein
3688	 70.80	0	4051624..4053654	-	676	119899980	-	azo3691	-	putative methyl-accepting chemotaxis transducer
3689	 73.54	+1	4053784..4054350	+	188	119899981	-	azo3692	-	putative N-acetyltransferase
3690	 73.11	+1	4054347..4055573	+	408	119899982	-	azo3693	-	hypothetical protein
3691	 73.66	+1	4055667..4055852	+	61	119899983	-	azo3694	-	hypothetical protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.