IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3177	 64.55	0	3489012..3490904	-	630	119899469	prpE	azo3179	-	propionyl-CoA synthetase
3178	 65.25	0	3491000..3492196	-	398	119899470	-	azo3180	-	putative response regulator protein
3179	 68.10	0	3492225..3493199	-	324	119899471	-	azo3181	-	dehydrogenase protein
3180	 67.59	0	3493390..3494259	+	289	119899472	-	azo3182	-	hypothetical protein
3181	 63.37	-1	3494332..3494907	+	191	119899473	lemA2	azo3183	-	hypothetical protein
3182	 69.66	0	3494927..3495829	+	300	119899474	-	azo3184	-	hypothetical protein
3183	 67.99	0	3495834..3497804	-	656	119899475	abcZ	azo3185	-	ABC transporter ATP-binding protein
3184	 68.12	0	3497849..3499915	+	688	119899476	-	azo3186	-	hypothetical protein
3185	 65.91	0	3500067..3500861	-	264	119899477	-	azo3187	-	putative serine protease
3186	 67.20	0	3500858..3501787	-	309	119899478	-	azo3188	-	soluble lytic murein transglycosylase precursor
3187	 62.06	-1	3501801..3503081	-	426	119899479	-	azo3189	-	NDPsugar dehydrogenase
3188	 65.70	0	3503118..3505919	-	933	119899480	-	azo3190	-	hypothetical protein
3189	 62.70	-1	3505919..3507280	-	453	119899481	atoC	azo3191	-	acetoacetate metabolism regulatory protein
3190	 61.81	-1	3507270..3509348	-	692	119899482	-	azo3192	-	putative two component sensor histidine kinase
3191	 60.95	-1	3509439..3510821	-	460	119899483	-	azo3193	-	glycosyltransferase
3192	 59.28	-2	3511072..3511518	+	148	119899484	-	azo3194	-	hypothetical protein
3193	 63.66	-1	3517200..3518531	-	443	119899485	-	azo3195	-	hypothetical protein
3194	 62.77	-1	3518714..3519508	+	264	119899486	thyA	azo3197	-	thymidylate synthase
3195	 65.25	0	3519505..3519999	+	164	119899487	folA	azo3198	-	FolA protein
3196	 62.97	-1	3520046..3522289	-	747	119899488	adiA	azo3199	-	putative Orn/Arg/Lys decarboxylase
3197	 59.26	-2	3522456..3523022	-	188	119899489	dcd	azo3200	-	deoxycytidine triphosphate deaminase
3198	 65.84	0	3523125..3524216	-	363	119899490	-	azo3201	-	putative iron sulfur binding protein
3199	 70.62	0	3524441..3525022	+	193	119899491	-	azo3202	-	lipoprotein attached to the membrane by a lipid anchor
3200	 66.16	0	3525107..3527278	+	723	119899492	metG	azo3203	-	methionyl-tRNA synthetase
3201	 68.44	0	3527498..3529189	+	563	119899493	sulP2	azo3204	-	putative sulfate transporter
3202	 74.75	+1	3529182..3529478	+	98	119899494	-	azo3205	-	acylphosphatase
3203	 67.78	0	3529488..3531545	-	685	119899495	-	azo3206	-	alkaline phosphatase superfamily protein
3204	 68.06	0	3531569..3532429	-	286	119899496	-	azo3207	-	hypothetical protein
3205	 66.72	0	3532537..3536055	-	1172	119899497	dnaE1	azo3208	-	DNA-directed DNA polymerase.
3206	 70.26	0	3536117..3537091	-	324	119899498	qor	azo3209	-	NADPH:quinone reductase
3207	 70.50	0	3537116..3538288	-	390	119899499	-	azo3210	-	hypothetical protein
3208	 66.14	0	3538418..3540706	-	762	119899500	maeB2	azo3211	-	malic enzyme
3209	 64.36	0	3541054..3541833	+	259	119899501	parA3	azo3212	-	ParA family protein
3210	 66.67	0	3541853..3544072	-	739	119899502	uvrD	azo3213	-	DNA helicase II
3211	 66.67	0	3544402..3544728	+	108	119899503	-	azo3214	-	hypothetical protein
3212	 66.44	0	3544948..3547569	+	873	119899504	-	azo3215	-	hypothetical protein
3213	 68.41	0	3547581..3548096	+	171	119899505	rlpB	azo3216	-	putative lipoprotein
3214	 68.74	0	3548093..3549103	+	336	119899506	holA	azo3217	-	DNA polymerase III subunit delta
3215	 67.54	0	3549209..3550468	+	419	119899507	proA	azo3218	-	gamma-glutamyl phosphate reductase
3216	 63.94	0	3550691..3551608	+	305	119899508	xerD	azo3219	-	integrase/recombinase
3217	 61.79	-1	3551633..3552124	+	163	119899509	ybaK	azo3220	-	putative transcriptional regulator protein
3218	 65.83	0	3552261..3552620	+	119	119899510	hvrA2	azo3221	-	putative trans-acting regulatory protein HvrA
3219	 59.79	-1	3552711..3553088	-	125	119899511	folB	azo3222	-	FolB protein
3220	 68.68	0	3553201..3553797	+	198	119899512	-	azo3223	-	hypothetical protein
3221	 67.73	0	3553798..3554829	-	343	119899513	gcp	azo3224	-	O-sialoglycoprotein endopeptidase
3222	 61.50	-1	3554961..3555173	+	70	119899514	rpsU	azo3225	-	30S ribosomal protein S21
3223	 66.06	0	3555250..3557070	+	606	119899515	dnaG	azo3226	-	DNA primase
3224	 62.95	-1	3557120..3559108	+	662	119899516	rpoD	azo3227	-	RNA polymerase sigma factor RpoD
3225	 62.60	-1	3559582..3559950	-	122	119899517	gloA2	azo3228	-	lactoylglutathione lyase
3226	 69.58	0	3559972..3560691	-	239	119899518	-	azo3229	-	putative hydrolase
3227	 65.60	0	3560730..3561479	-	249	119899519	-	azo3230	-	hypothetical protein
3228	 67.19	0	3561476..3562246	-	256	119899520	-	azo3231	-	hypothetical protein
3229	 64.90	0	3562254..3563612	-	452	119899521	ffh	azo3232	-	signal recognition particle protein
3230	 65.45	0	3563665..3564489	+	274	119899522	-	azo3233	-	hypothetical protein
3231	 62.77	-1	3564593..3566311	+	572	119899523	pilB2	azo3234	-	pilus biogenesis protein
3232	 59.87	-1	3566331..3567566	+	411	119899524	pilC	azo3235	-	type 4 pilus biogenesis protein
3233	 64.91	0	3567612..3568463	+	283	119899525	pilD	azo3236	-	prepilin peptidase
3234	 63.98	0	3568611..3568871	+	86	119899526	-	azo3237	-	hypothetical protein
3235	 61.56	-1	3568884..3569510	+	208	119899527	-	azo3238	-	hypothetical protein
3236	 65.39	0	3569566..3571365	+	599	119899528	aspS	azo3239	-	aspartyl-tRNA synthetase
3237	 66.24	0	3571506..3573158	+	550	119899529	-	azo3240	-	response regulator
3238	 71.04	0	3573175..3573540	+	121	119899530	-	azo3241	-	ribonuclease
3239	 71.27	0	3573537..3573992	+	151	119899531	-	azo3242	-	hypothetical protein
3240	 61.27	-1	3574142..3574567	+	141	119899532	hsp18	azo3243	-	putative small heat shock protein
3241	 63.79	0	3574680..3575582	+	300	119899533	argB	azo3244	-	acetylglutamate kinase
3242	 68.99	0	3575587..3576747	+	386	119899534	-	azo3245	-	hypothetical protein
3243	 68.44	0	3576895..3578475	+	526	119899535	fadD4	azo3246	-	long-chain-fatty-acid-CoA ligase
3244	 67.61	0	3578572..3580368	+	598	119899536	asn	azo3247	-	asparagine synthase
3245	 66.59	0	3580380..3581663	+	427	119899537	lysA1	azo3248	-	diaminopimelate decarboxylase
3246	 62.67	-1	3581684..3582433	-	249	119899538	-	azo3249	-	hypothetical protein
3247	 66.43	0	3582430..3583287	-	285	119899539	-	azo3250	-	hypothetical protein
3248	 68.34	0	3583284..3584120	-	278	119899540	-	azo3251	-	hypothetical protein
3249	 58.95	-2	3584127..3584411	-	94	119899541	-	azo3252	-	hypothetical protein
3250	 68.45	0	3584536..3585771	+	411	119899542	-	azo3253	-	hypothetical protein
3251	 66.67	0	3585774..3586460	+	228	119899543	-	azo3254	-	hypothetical protein
3252	 62.61	-1	3586547..3588568	+	673	119899544	-	azo3255	-	acyltransferase
3253	 59.19	-2	3588679..3590055	+	458	119899545	-	azo3256	-	hypothetical protein
3254	 59.48	-2	3590109..3591152	+	347	119899546	-	azo3257	-	polysaccharide polymerase
3255	 63.42	-1	3591156..3592049	+	297	119899547	-	azo3258	-	glycosyltransferase
3256	 61.92	-1	3592004..3592930	-	308	119899548	-	azo3259	-	glycosyltransferase
3257	 61.02	-1	3593146..3594084	+	312	119899549	-	azo3260	-	glycosyltransferase
3258	 64.64	0	3594077..3595309	+	410	119899550	-	azo3261	-	glycosyltransferase
3259	 61.84	-1	3595306..3596340	+	344	119899551	-	azo3262	-	glycosyltransferase
3260	 65.93	0	3596367..3597584	+	405	119899552	-	azo3263	-	hypothetical protein
3261	 64.92	0	3597597..3599087	-	496	119899553	-	azo3264	-	hypothetical protein
3262	 67.22	0	3599098..3600003	-	301	119899554	-	azo3265	-	glycosyltransferase
3263	 68.00	0	3600066..3601037	-	323	119899555	-	azo3266	-	polysaccharide deacetylase
3264	 63.62	-1	3601034..3602380	-	448	119899556	-	azo3267	-	hypothetical protein
3265	 70.74	0	3602380..3603606	-	408	119899557	-	azo3268	-	glycosyltransferase
3266	 65.30	0	3603654..3604970	-	438	119899558	algD	azo3269	-	GDP-mannose 6-dehydrogenase
3267	 65.02	0	3604967..3606178	-	403	119899559	-	azo3270	-	glycosyltransferase
3268	 68.27	0	3606175..3608103	-	642	119899560	asnB1	azo3271	-	asparagine synthetase
3269	 70.00	0	3608105..3609364	-	419	119899561	-	azo3272	-	glycosyltransferase
3270	 67.08	0	3609333..3611267	-	644	119899562	asnB2	azo3273	-	asparagine synthetase
3271	 68.96	0	3611287..3612462	-	391	119899563	-	azo3274	-	glycosyltransferase
3272	 68.79	0	3612459..3614009	-	516	119899564	-	azo3275	-	hypothetical protein
3273	 65.58	0	3614065..3615168	-	367	119899565	-	azo3276	-	hypothetical protein
3274	 65.16	0	3615137..3615997	-	286	119899566	-	azo3277	-	hypothetical protein
3275	 66.41	0	3615997..3617154	-	385	119899567	mnaA	azo3278	-	UDP-N-acetylglucosamine 2-epimerase
3276	 63.87	0	3617151..3618224	-	357	119899568	gspA	azo3279	-	MSHA biogenesis protein MshM
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.