IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3127	 63.30	-1	3437106..3437372	+	88	119899419	-	azo3129	-	hypothetical protein
3128	 73.36	+1	3437383..3438279	-	298	119899420	dnaL	azo3130	-	DNA ligase
3129	 71.55	0	3438489..3439451	+	320	119899421	miaA	azo3131	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3130	 63.92	0	3439484..3440029	+	181	119899422	-	azo3132	-	hypothetical protein
3131	 78.30	+2	3440085..3440531	-	148	119899423	-	azo3133	-	hypothetical protein
3132	 68.26	0	3440553..3443636	-	1027	119899424	-	azo3134	-	RND efflux transporter, permease protein
3133	 72.50	+1	3443646..3444743	-	365	119899425	-	azo3135	-	membrane fusion protein
3134	 66.67	0	3444879..3445937	-	352	119899426	purM	azo3136	-	phosphoribosylaminoimidazole synthetase
3135	 69.97	0	3446157..3447275	+	372	119899427	-	azo3137	-	hypothetical protein
3136	 73.04	+1	3447272..3447961	+	229	119899428	-	azo3138	-	hypothetical protein
3137	 67.57	0	3447999..3448661	+	220	119899429	-	azo3139	-	haloacid dehalogenase-like hydrolase family protein
3138	 69.39	0	3448752..3450110	+	452	119899430	pcnB	azo3140	-	poly(A) polymerase
3139	 71.69	0	3450110..3450607	+	165	119899431	folK	azo3141	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
3140	 61.72	-1	3450614..3450997	+	127	119899432	-	azo3142	-	hypothetical protein
3141	 67.29	0	3451005..3451646	+	213	119899433	-	azo3143	-	putative deoxyguanosine kinase
3142	 67.16	0	3451731..3452546	+	271	119899434	panB	azo3144	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3143	 69.20	0	3452563..3453390	+	275	119899435	panC	azo3145	-	pantoate--beta-alanine ligase
3144	 64.42	0	3453480..3453968	+	162	119899436	-	azo3146	-	hypothetical protein
3145	 69.46	0	3454036..3456720	-	894	119899437	pepN	azo3147	-	PepN protein
3146	 71.54	0	3456803..3457705	-	300	119899438	uspA	azo3148	-	universal stress protein
3147	 70.37	0	3457702..3460452	-	916	119899439	pma1	azo3149	-	putative cation-transporting P-type ATPase
3148	 66.26	0	3460566..3461057	-	163	119899440	-	azo3150	-	putative RDD family protein
3149	 73.22	+1	3461066..3461431	-	121	119899441	-	azo3151	-	hypothetical protein
3150	 71.05	0	3461470..3461880	-	136	119899442	-	azo3152	-	hypothetical protein
3151	 64.97	0	3461877..3462467	-	196	119899443	-	azo3153	-	RNA polymerase sigma factor
3152	 64.27	0	3462564..3464276	+	570	119899444	ilvI	azo3154	-	acetolactate synthase
3153	 63.41	-1	3464331..3464822	+	163	119899445	ilvH	azo3155	-	acetolactate synthase 3 regulatory subunit
3154	 62.54	-1	3464912..3465928	+	338	119899446	ilvC	azo3156	-	ketol-acid reductoisomerase
3155	 67.17	0	3466062..3466856	+	264	119899447	pssA	azo3157	-	putative CDP-diacylglycerol--serine O-phosphatidyltransferase
3156	 66.96	0	3466884..3467567	+	227	119899448	colR	azo3158	-	two-component system regulatory protein
3157	 69.23	0	3467557..3468843	+	428	119899449	colS	azo3159	-	two-component system sensor protein
3158	 67.96	0	3468913..3469608	+	231	119899450	-	azo3160	-	hypothetical protein
3159	 69.04	0	3469605..3470279	+	224	119899451	inaA	azo3161	-	InaA protein
3160	 65.62	0	3470652..3472187	+	511	119899452	leuA1	azo3162	-	2-isopropylmalate synthase
3161	 70.09	0	3472263..3472613	-	116	119899453	-	azo3163	-	hypothetical protein
3162	 69.50	0	3472610..3473209	-	199	119899454	wrbA2	azo3164	-	tryptophan repressor binding protein (flavodoxin)
3163	 70.09	0	3473290..3474516	+	408	119899455	-	azo3165	-	exoribonuclease II
3164	 70.28	0	3474504..3476027	-	507	119899456	-	azo3166	-	hypothetical protein
3165	 59.29	-2	3476239..3476550	+	103	119899457	rplU	azo3167	-	50S ribosomal protein L21
3166	 64.86	0	3476566..3476841	+	91	119899458	rpmA	azo3168	-	50S ribosomal protein L27
3167	 68.30	0	3476915..3478141	+	408	119899459	obgE	azo3169	-	GTPase ObgE
3168	 68.73	0	3478164..3479279	+	371	119899460	proB	azo3170	-	gamma-glutamyl kinase
3169	 63.72	0	3479458..3480543	+	361	119899461	-	azo3171	-	hypothetical protein
3170	 67.52	0	3480540..3482300	+	586	119899462	-	azo3172	-	putative long chain fatty acid CoA ligase
3171	 65.43	0	3482297..3483427	+	376	119899463	galE1	azo3173	-	UDP-glucose 4-epimerase
3172	 63.93	0	3483441..3484316	-	291	119899464	-	azo3174	-	putative methyltransferase
3173	 63.58	-1	3484397..3485239	-	280	119899465	-	azo3175	-	hypothetical protein
3174	 65.75	0	3485581..3486774	+	397	119899466	-	azo3176	-	permease component of an ABC-transporter system
3175	 64.20	0	3486774..3487988	+	404	119899467	lolE3	azo3177	-	permease component of an ABC transporter system
3176	 63.59	-1	3488167..3488946	+	259	119899468	-	azo3178	-	hypothetical protein
3177	 64.55	0	3489012..3490904	-	630	119899469	prpE	azo3179	-	propionyl-CoA synthetase
3178	 65.25	0	3491000..3492196	-	398	119899470	-	azo3180	-	putative response regulator protein
3179	 68.10	0	3492225..3493199	-	324	119899471	-	azo3181	-	dehydrogenase protein
3180	 67.59	0	3493390..3494259	+	289	119899472	-	azo3182	-	hypothetical protein
3181	 63.37	-1	3494332..3494907	+	191	119899473	lemA2	azo3183	-	hypothetical protein
3182	 69.66	0	3494927..3495829	+	300	119899474	-	azo3184	-	hypothetical protein
3183	 67.99	0	3495834..3497804	-	656	119899475	abcZ	azo3185	-	ABC transporter ATP-binding protein
3184	 68.12	0	3497849..3499915	+	688	119899476	-	azo3186	-	hypothetical protein
3185	 65.91	0	3500067..3500861	-	264	119899477	-	azo3187	-	putative serine protease
3186	 67.20	0	3500858..3501787	-	309	119899478	-	azo3188	-	soluble lytic murein transglycosylase precursor
3187	 62.06	-1	3501801..3503081	-	426	119899479	-	azo3189	-	NDPsugar dehydrogenase
3188	 65.70	0	3503118..3505919	-	933	119899480	-	azo3190	-	hypothetical protein
3189	 62.70	-1	3505919..3507280	-	453	119899481	atoC	azo3191	-	acetoacetate metabolism regulatory protein
3190	 61.81	-1	3507270..3509348	-	692	119899482	-	azo3192	-	putative two component sensor histidine kinase
3191	 60.95	-1	3509439..3510821	-	460	119899483	-	azo3193	-	glycosyltransferase
3192	 59.28	-2	3511072..3511518	+	148	119899484	-	azo3194	-	hypothetical protein
3193	 63.66	-1	3517200..3518531	-	443	119899485	-	azo3195	-	hypothetical protein
3194	 62.77	-1	3518714..3519508	+	264	119899486	thyA	azo3197	-	thymidylate synthase
3195	 65.25	0	3519505..3519999	+	164	119899487	folA	azo3198	-	FolA protein
3196	 62.97	-1	3520046..3522289	-	747	119899488	adiA	azo3199	-	putative Orn/Arg/Lys decarboxylase
3197	 59.26	-2	3522456..3523022	-	188	119899489	dcd	azo3200	-	deoxycytidine triphosphate deaminase
3198	 65.84	0	3523125..3524216	-	363	119899490	-	azo3201	-	putative iron sulfur binding protein
3199	 70.62	0	3524441..3525022	+	193	119899491	-	azo3202	-	lipoprotein attached to the membrane by a lipid anchor
3200	 66.16	0	3525107..3527278	+	723	119899492	metG	azo3203	-	methionyl-tRNA synthetase
3201	 68.44	0	3527498..3529189	+	563	119899493	sulP2	azo3204	-	putative sulfate transporter
3202	 74.75	+1	3529182..3529478	+	98	119899494	-	azo3205	-	acylphosphatase
3203	 67.78	0	3529488..3531545	-	685	119899495	-	azo3206	-	alkaline phosphatase superfamily protein
3204	 68.06	0	3531569..3532429	-	286	119899496	-	azo3207	-	hypothetical protein
3205	 66.72	0	3532537..3536055	-	1172	119899497	dnaE1	azo3208	-	DNA-directed DNA polymerase.
3206	 70.26	0	3536117..3537091	-	324	119899498	qor	azo3209	-	NADPH:quinone reductase
3207	 70.50	0	3537116..3538288	-	390	119899499	-	azo3210	-	hypothetical protein
3208	 66.14	0	3538418..3540706	-	762	119899500	maeB2	azo3211	-	malic enzyme
3209	 64.36	0	3541054..3541833	+	259	119899501	parA3	azo3212	-	ParA family protein
3210	 66.67	0	3541853..3544072	-	739	119899502	uvrD	azo3213	-	DNA helicase II
3211	 66.67	0	3544402..3544728	+	108	119899503	-	azo3214	-	hypothetical protein
3212	 66.44	0	3544948..3547569	+	873	119899504	-	azo3215	-	hypothetical protein
3213	 68.41	0	3547581..3548096	+	171	119899505	rlpB	azo3216	-	putative lipoprotein
3214	 68.74	0	3548093..3549103	+	336	119899506	holA	azo3217	-	DNA polymerase III subunit delta
3215	 67.54	0	3549209..3550468	+	419	119899507	proA	azo3218	-	gamma-glutamyl phosphate reductase
3216	 63.94	0	3550691..3551608	+	305	119899508	xerD	azo3219	-	integrase/recombinase
3217	 61.79	-1	3551633..3552124	+	163	119899509	ybaK	azo3220	-	putative transcriptional regulator protein
3218	 65.83	0	3552261..3552620	+	119	119899510	hvrA2	azo3221	-	putative trans-acting regulatory protein HvrA
3219	 59.79	-1	3552711..3553088	-	125	119899511	folB	azo3222	-	FolB protein
3220	 68.68	0	3553201..3553797	+	198	119899512	-	azo3223	-	hypothetical protein
3221	 67.73	0	3553798..3554829	-	343	119899513	gcp	azo3224	-	O-sialoglycoprotein endopeptidase
3222	 61.50	-1	3554961..3555173	+	70	119899514	rpsU	azo3225	-	30S ribosomal protein S21
3223	 66.06	0	3555250..3557070	+	606	119899515	dnaG	azo3226	-	DNA primase
3224	 62.95	-1	3557120..3559108	+	662	119899516	rpoD	azo3227	-	RNA polymerase sigma factor RpoD
3225	 62.60	-1	3559582..3559950	-	122	119899517	gloA2	azo3228	-	lactoylglutathione lyase
3226	 69.58	0	3559972..3560691	-	239	119899518	-	azo3229	-	putative hydrolase
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.