IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3050	 68.42	0	3354997..3356595	-	532	119899342	bzdA	azo3052	-	benzoate-coa ligase
3051	 67.53	0	3356689..3357153	-	154	119899343	-	azo3053	-	hypothetical protein
3052	 71.17	0	3357353..3358930	-	525	119899344	-	azo3054	-	aldehyde dehydrogenase
3053	 66.89	0	3359261..3360175	+	304	119899345	-	azo3055	-	anaerobic benzoate catabolism transcriptional regulator
3054	 67.33	0	3360200..3361864	+	554	119899346	-	azo3056	-	enoyl-CoA hydratase
3055	 64.21	0	3362066..3363490	+	474	119899347	boxB	azo3057	-	benzoyl-CoA oxygenase component B
3056	 65.95	0	3363690..3364940	+	416	119899348	boxA	azo3058	-	putative benzoyl-CoA oxygenase component A
3057	 71.71	0	3365275..3366483	+	402	119899349	-	azo3059	-	beta-ketoadipyl CoA thiolase
3058	 66.14	0	3366498..3367259	+	253	119899350	-	azo3060	-	hypothetical protein
3059	 70.21	0	3367800..3370820	-	1006	119899351	-	azo3061	-	GGDEF/EAL/PAS/PAC/GAF-domain-containing protein
3060	 71.32	0	3371066..3372010	-	314	119899352	brkB	azo3062	-	exoribonuclease II
3061	 73.91	+1	3372179..3373117	-	312	119899353	-	azo3063	-	hypothetical protein
3062	 64.74	0	3373359..3373826	+	155	119899354	lrp1	azo3064	-	leucine-responsive regulatory protein
3063	 70.36	0	3374096..3375016	-	306	119899355	mvaB	azo3065	-	hydroxymethylglutaryl-CoA lyase
3064	 65.66	0	3375027..3376715	-	562	119899356	fadD3	azo3066	-	acyl-CoA synthetase
3065	 62.63	-1	3376848..3377219	-	123	119899357	ycjD	azo3067	-	hypothetical protein
3066	 68.62	0	3377487..3379487	-	666	119899358	accC2	azo3068	-	biotin carboxylase subunit of acetyl-CoA carboxylase
3067	 70.85	0	3379877..3380665	-	262	119899359	paaG5	azo3069	-	enoyl-CoA hydratase
3068	 67.04	0	3380677..3382284	-	535	119899360	-	azo3070	-	carboxyltransferase subunit of acetyl-CoA carboxylase
3069	 57.61	-2	3382372..3382614	-	80	119899361	-	azo3071	-	hypothetical protein
3070	 54.07	-2	3382666..3383205	-	179	119899362	-	azo3072	-	hypothetical protein
3071	 51.13	-2	3383307..3384761	-	484	119899363	-	azo3073	-	hypothetical protein
3072	 52.87	-2	3384762..3385667	-	301	119899364	-	azo3074	-	hypothetical protein
3073	 54.40	-2	3385767..3386345	-	192	119899365	-	azo3075	-	hypothetical protein
3074	 64.95	0	3387069..3387359	+	96	119899366	-	azo3076	-	hypothetical protein
3075	 59.52	-2	3387356..3387649	+	97	119899367	-	azo3077	-	hypothetical protein
3076	 67.97	0	3387664..3388353	-	229	119899368	-	azo3078	-	DeoR family transcriptional regulator
3077	 63.69	-1	3388508..3388876	+	122	119899369	-	azo3079	-	hypothetical protein
3078	 56.57	-2	3389559..3389756	+	65	119899370	-	azo3080	-	hypothetical protein
3079	 64.79	0	3389852..3391024	-	390	119899371	-	azo3081	-	acyl-coa dehydrogenase
3080	 70.55	0	3391123..3392256	+	377	119899372	oruR2	azo3082	-	putative ornithine utilization regulator
3081	 70.23	0	3392619..3393011	-	130	119899373	-	azo3083	-	hypothetical protein
3082	 68.09	0	3393105..3393806	+	233	119899374	flp	azo3084	-	putative transcriptional regulator
3083	 74.38	+1	3393825..3395108	-	427	119899375	-	azo3085	-	hypothetical protein
3084	 66.24	0	3395119..3395355	-	78	119899376	-	azo3086	-	hypothetical protein
3085	 68.82	0	3395348..3395812	-	154	119899377	-	azo3087	-	hypothetical protein
3086	 62.21	-1	3396033..3396458	+	141	119899378	norC	azo3088	-	putative nitric-oxide reductase subunit C
3087	 63.84	0	3396487..3397866	+	459	119899379	norB	azo3089	-	putative nitric-oxide reductase subunit B
3088	 69.61	0	3397938..3398141	+	67	119899380	-	azo3090	-	hypothetical protein
3089	 68.43	0	3398151..3398831	-	226	119899381	trkA1	azo3091	-	putative potassium uptake protein
3090	 68.02	0	3398833..3400161	-	442	119899382	trkH1	azo3092	-	putative potassium uptake protein, membrane component.
3091	 71.28	0	3400221..3400913	-	230	119899383	-	azo3093	-	two component system transcriptional regulatory protein
3092	 73.79	+1	3400910..3402439	-	509	119899384	kdpD2	azo3094	-	sensor for high-affinity potassium transport system
3093	 70.91	0	3402633..3403433	+	266	119899385	norQ	azo3095	-	nitric-oxide reductase
3094	 70.40	0	3403553..3404569	+	338	119899386	-	azo3096	-	iron-sulfur 4Fe-4S ferredoxin transmembrane protein
3095	 72.44	+1	3404573..3406684	+	703	119899387	norD	azo3097	-	nitric-oxide reductase accessory cytoplasmic protein
3096	 70.20	0	3406687..3407451	+	254	119899388	-	azo3098	-	putative Fnr-like transcriptional activator
3097	 69.75	0	3407478..3408710	-	410	119899389	serA	azo3099	-	D-3-phosphoglycerate dehydrogenase
3098	 66.88	0	3408745..3410151	-	468	119899390	rdxB	azo3100	-	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
3099	 71.21	0	3410296..3410757	+	153	119899391	aau3	azo3101	-	AAU3 protein precursor
3100	 71.79	0	3410759..3411988	-	409	119899392	-	azo3102	-	hypothetical protein
3101	 73.18	+1	3412240..3412638	+	132	119899393	nosC	azo3103	-	cytochrome c5
3102	 71.06	0	3412697..3412969	-	90	119899394	-	azo3104	-	hypothetical protein
3103	 68.49	0	3413017..3413235	-	72	119899395	-	azo3105	-	hypothetical protein
3104	 77.01	+2	3413290..3413937	-	215	119899396	-	azo3106	-	hypothetical protein
3105	 68.75	0	3413940..3414467	-	175	119899397	nosL	azo3107	-	putative NosL protein
3106	 68.75	0	3414476..3415291	-	271	119899398	nosY	azo3108	-	putative copper transport system, permease protein
3107	 71.11	0	3415299..3416243	-	314	119899399	nosF	azo3109	-	putative copper transport system, ATP-binding protein
3108	 67.29	0	3416272..3417549	-	425	119899400	nosD	azo3110	-	putative copper transport system, periplasmic-binding protein
3109	 71.76	0	3417557..3417988	-	143	119899401	nosRb	azo3111	-	hypothetical protein
3110	 66.76	0	3418003..3420174	-	723	119899402	nosRa	azo3112	-	transcriptional activator
3111	 64.65	0	3420337..3422271	-	644	119899403	nosZ	azo3113	-	nitrous-oxide reductase
3112	 70.29	0	3422454..3422729	-	91	119899404	-	azo3114	-	hypothetical protein
3113	 63.90	0	3423208..3424434	-	408	119899405	lysC	azo3115	-	aspartate kinase
3114	 59.26	-2	3424699..3424995	+	98	119899406	-	azo3116	-	hypothetical protein
3115	 66.88	0	3425017..3425976	-	319	119899407	-	azo3117	-	hypothetical protein
3116	 65.35	0	3425991..3426446	+	151	119899408	-	azo3118	-	6-pyruvoyltetrahydropterin synthase
3117	 62.91	-1	3426502..3427671	-	389	119899409	-	azo3119	-	fatty acid desaturase
3118	 68.94	0	3427710..3429119	-	469	119899410	-	azo3120	-	mechanosensitive ion channel
3119	 72.54	+1	3429122..3429700	-	192	119899411	-	azo3121	-	putative endonuclease
3120	 71.38	0	3429690..3430982	-	430	119899412	-	azo3122	-	hypothetical protein
3121	 72.38	+1	3430991..3432181	-	396	119899413	-	azo3123	-	hypothetical protein
3122	 71.50	0	3432188..3432829	-	213	119899414	-	azo3124	-	phosphoribosylglycinamide formyltransferase
3123	 66.53	0	3432869..3433585	-	238	119899415	-	azo3125	-	hypothetical protein
3124	 72.56	+1	3433752..3435617	+	621	119899416	mutL	azo3126	-	DNA mismatch repair protein
3125	 74.83	+1	3435648..3436235	-	195	119899417	-	azo3127	-	hypothetical protein
3126	 67.29	0	3436442..3436924	+	160	119899418	nikR	azo3128	-	nickel responsive regulator
3127	 63.30	-1	3437106..3437372	+	88	119899419	-	azo3129	-	hypothetical protein
3128	 73.36	+1	3437383..3438279	-	298	119899420	dnaL	azo3130	-	DNA ligase
3129	 71.55	0	3438489..3439451	+	320	119899421	miaA	azo3131	-	tRNA delta(2)-isopentenylpyrophosphate transferase
3130	 63.92	0	3439484..3440029	+	181	119899422	-	azo3132	-	hypothetical protein
3131	 78.30	+2	3440085..3440531	-	148	119899423	-	azo3133	-	hypothetical protein
3132	 68.26	0	3440553..3443636	-	1027	119899424	-	azo3134	-	RND efflux transporter, permease protein
3133	 72.50	+1	3443646..3444743	-	365	119899425	-	azo3135	-	membrane fusion protein
3134	 66.67	0	3444879..3445937	-	352	119899426	purM	azo3136	-	phosphoribosylaminoimidazole synthetase
3135	 69.97	0	3446157..3447275	+	372	119899427	-	azo3137	-	hypothetical protein
3136	 73.04	+1	3447272..3447961	+	229	119899428	-	azo3138	-	hypothetical protein
3137	 67.57	0	3447999..3448661	+	220	119899429	-	azo3139	-	haloacid dehalogenase-like hydrolase family protein
3138	 69.39	0	3448752..3450110	+	452	119899430	pcnB	azo3140	-	poly(A) polymerase
3139	 71.69	0	3450110..3450607	+	165	119899431	folK	azo3141	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
3140	 61.72	-1	3450614..3450997	+	127	119899432	-	azo3142	-	hypothetical protein
3141	 67.29	0	3451005..3451646	+	213	119899433	-	azo3143	-	putative deoxyguanosine kinase
3142	 67.16	0	3451731..3452546	+	271	119899434	panB	azo3144	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
3143	 69.20	0	3452563..3453390	+	275	119899435	panC	azo3145	-	pantoate--beta-alanine ligase
3144	 64.42	0	3453480..3453968	+	162	119899436	-	azo3146	-	hypothetical protein
3145	 69.46	0	3454036..3456720	-	894	119899437	pepN	azo3147	-	PepN protein
3146	 71.54	0	3456803..3457705	-	300	119899438	uspA	azo3148	-	universal stress protein
3147	 70.37	0	3457702..3460452	-	916	119899439	pma1	azo3149	-	putative cation-transporting P-type ATPase
3148	 66.26	0	3460566..3461057	-	163	119899440	-	azo3150	-	putative RDD family protein
3149	 73.22	+1	3461066..3461431	-	121	119899441	-	azo3151	-	hypothetical protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.