IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2729	 67.52	0	3013521..3015512	-	663	119899021	flgK	azo2731	-	flagellar hook-filament junction protein 1
2730	 70.69	0	3015668..3016735	-	355	119899022	flgJ	azo2732	-	peptidoglycan hydrolase
2731	 69.45	0	3016818..3017930	-	370	119899023	flgI	azo2733	-	flagellar basal body P-ring protein
2732	 67.40	0	3017950..3018627	-	225	119899024	flgH	azo2734	-	flagellar L-ring protein precursor
2733	 66.54	0	3018650..3019432	-	260	119899025	flgG	azo2735	-	flagellar basal body rod protein FlgG
2734	 68.43	0	3019571..3020308	-	245	119899026	flgF	azo2736	-	flagellar basal-body rod protein FlgF
2735	 64.13	0	3020334..3021671	-	445	119899027	flgE	azo2737	-	FlgE protein
2736	 65.63	0	3021687..3022361	-	224	119899028	flgD	azo2738	-	basal-body rod modification protein FlgD
2737	 65.53	0	3022403..3022843	-	146	119899029	flgC	azo2739	-	flagellar basal-body rod protein FlgC
2738	 63.43	-1	3022865..3023266	-	133	119899030	flgB	azo2740	-	flagellar basal-body rod protein FlgB
2739	 73.54	+1	3023519..3024289	+	256	119899031	flgA	azo2741	-	chaperon for flagellar basal body P-ring formation
2740	 63.97	0	3024385..3024681	+	98	119899032	-	azo2742	-	putative negative regulator of flagellin synthesis FlgM
2741	 70.00	0	3024695..3025174	+	159	119899033	flgN	azo2743	-	putative chaperon of flagellar synthesis
2742	 69.26	0	3025253..3025792	-	179	119899034	-	azo2744	-	hypothetical protein
2743	 68.77	0	3025977..3026735	+	252	119899035	ompR2	azo2745	-	DNA-binding response regulator
2744	 71.99	+1	3026732..3028066	+	444	119899036	envZ2	azo2746	-	putative sensor histidine kinase
2745	 63.11	-1	3028173..3028706	-	177	119899037	-	azo2747	-	hypothetical protein
2746	 67.68	0	3029233..3031296	+	687	119899038	-	azo2748	-	putative sensory box histidine kinase
2747	 65.87	0	3031290..3031919	+	209	119899039	vsrD2	azo2749	-	LuxR family transcriptional regulator
2748	 73.02	+1	3031885..3033474	-	529	119899040	glpA	azo2750	-	putative glycerol-3-phosphate dehydrogenase
2749	 72.43	+1	3033471..3034961	-	496	119899041	glpK	azo2751	-	glycerol kinase
2750	 69.08	0	3035084..3035953	+	289	119899042	-	azo2752	-	hypothetical protein
2751	 61.98	-1	3036044..3036406	+	120	119899043	-	azo2753	-	hypothetical protein
2752	 67.72	0	3036403..3037257	+	284	119899044	sseA	azo2754	-	putative thiosulfate sulfurtransferase
2753	 67.52	0	3037292..3038107	-	271	119899045	murI	azo2755	-	glutamate racemase
2754	 63.83	0	3038104..3039303	-	399	119899046	-	azo2756	-	tyrosyl-tRNA synthetase
2755	 66.89	0	3039381..3040709	+	442	119899047	-	azo2757	-	metalloprotease precursor
2756	 57.55	-2	3040778..3041128	-	116	119899048	-	azo2758	-	iron-sulfur cluster insertion protein ErpA
2757	 63.10	-1	3041369..3041761	-	130	119899049	rpsI	azo2759	-	30S ribosomal protein S9
2758	 60.37	-1	3041775..3042203	-	142	119899050	rplM	azo2760	-	50S ribosomal protein L13
2759	 65.90	0	3042732..3043124	+	130	119899051	-	azo2761	-	hypothetical protein
2760	 66.34	0	3043258..3043878	-	206	119899052	-	azo2762	-	ubiquinone biosynthesis protein
2761	 66.85	0	3043881..3044411	-	176	119899053	-	azo2763	-	hypothetical protein
2762	 61.93	-1	3044471..3044998	-	175	119899054	-	azo2764	-	dinucleoside polyphosphate hydrolase
2763	 65.98	0	3045152..3046897	+	581	119899055	-	azo2765	-	prolyl-tRNA synthetase
2764	 69.79	0	3046921..3047592	+	223	119899056	-	azo2766	-	soluble lytic murein transglycosylase precursor
2765	 67.17	0	3047582..3048178	-	198	119899057	-	azo2767	-	hypothetical protein
2766	 70.11	0	3048521..3049915	+	464	119899058	yfhK	azo2768	-	putative two-component system sensor kinase
2767	 74.17	+1	3049908..3050480	+	190	119899059	-	azo2769	-	hypothetical protein
2768	 69.24	0	3050477..3051874	+	465	119899060	yfhA	azo2770	-	putative two component transcriptional regulator
2769	 68.84	0	3051907..3053010	+	367	119899061	-	azo2771	-	hypothetical protein
2770	 64.66	0	3053030..3054127	-	365	119899062	-	azo2772	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2771	 68.63	0	3054144..3054806	-	220	119899063	-	azo2773	-	hypothetical protein
2772	 68.53	0	3054806..3055288	-	160	119899064	-	azo2774	-	hypothetical protein
2773	 65.26	0	3055412..3056332	+	306	119899065	ilvE2	azo2775	-	branched-chain amino acid aminotransferase
2774	 65.67	0	3056343..3056543	+	66	119899066	-	azo2776	-	hypothetical protein
2775	 70.98	0	3056655..3057674	+	339	119899067	-	azo2777	-	hypothetical protein
2776	 67.96	0	3057734..3059125	+	463	119899068	pgm	azo2778	-	putative phosphoglucomutase
2777	 65.39	0	3059222..3060082	+	286	119899069	-	azo2779	-	hypothetical protein
2778	 66.14	0	3060174..3062831	-	885	119899070	alaS	azo2780	-	alanyl-tRNA synthetase
2779	 68.30	0	3062977..3063528	+	183	119899071	-	azo2781	-	hypothetical protein
2780	 69.38	0	3063558..3063926	-	122	119899072	-	azo2782	-	hypothetical protein
2781	 70.94	0	3063993..3064577	+	194	119899073	-	azo2783	-	DNA repair system specific for alkylated DNA
2782	 72.25	+1	3064764..3065855	+	363	119899074	-	azo2784	-	monoamine oxidase
2783	 73.12	+1	3065910..3067784	-	624	119899075	-	azo2785	-	hypothetical protein
2784	 70.30	0	3067852..3068925	-	357	119899076	dinP	azo2786	-	DNA polymerase IV
2785	 70.62	0	3068980..3070395	-	471	119899077	rumC	azo2787	-	putative RumC-like protein
2786	 67.22	0	3070509..3071594	-	361	119899078	aroG	azo2788	-	phospho-2-dehydro-3-deoxyheptonate aldolase
2787	 71.92	0	3071733..3072989	+	418	119899079	kefC	azo2789	-	putative cation/proton antiporter
2788	 67.92	0	3073104..3074060	+	318	119899080	-	azo2790	-	putative sulfite oxidase subunit YedY
2789	 68.44	0	3074075..3074752	+	225	119899081	-	azo2791	-	hypothetical protein
2790	 68.86	0	3074783..3075376	-	197	119899082	mogA	azo2792	-	molybdenum cofactor biosynthesis protein
2791	 66.31	0	3075373..3075936	-	187	119899083	yjgA	azo2793	-	hypothetical protein
2792	 67.04	0	3076001..3077341	+	446	119899084	pmbA	azo2794	-	PmbA protein
2793	 65.01	0	3077588..3078736	+	382	119899085	-	azo2795	-	putative periplasmic substrate binding protein
2794	 65.42	0	3078912..3080594	-	560	119899086	-	azo2796	-	putative large permease component of TRAP-type transporter
2795	 62.46	-1	3080591..3081184	-	197	119899087	-	azo2797	-	putative small permease component of TRAP-type transporter
2796	 69.93	0	3081308..3081982	+	224	119899088	gpmB	azo2798	-	phosphoglycerate mutase
2797	 70.19	0	3082083..3083501	+	472	119899089	kdpD1	azo2799	-	two component sensor protein
2798	 66.67	0	3083510..3084190	+	226	119899090	kdpE	azo2800	-	two component system transcriptional regulatory protein
2799	 66.11	0	3084401..3085651	+	416	119899091	glyA	azo2801	-	serine hydroxymethyltransferase
2800	 63.76	0	3085693..3086208	+	171	119899092	ribX	azo2802	-	transcriptional regulator NrdR
2801	 70.79	0	3086189..3087280	+	363	119899093	ribD	azo2803	-	AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
2802	 68.80	0	3087294..3088043	-	249	119899094	-	azo2804	-	adenylyltransferase, putative
2803	 66.45	0	3088140..3088598	-	152	119899095	-	azo2805	-	hypothetical protein
2804	 65.22	0	3088619..3089998	-	459	119899096	ctpa	azo2806	-	carboxy-terminal processing protease precursor
2805	 70.11	0	3090060..3091394	-	444	119899097	-	azo2807	-	hypothetical protein
2806	 65.47	0	3091417..3092166	-	249	119899098	gpmA	azo2808	-	putative phosphoglycerate mutase
2807	 61.22	-1	3092165..3092641	+	158	119899099	hlyU	azo2809	-	ArsR family transcriptional regulator
2808	 64.03	0	3092677..3093093	+	138	119899100	-	azo2810	-	hypothetical protein
2809	 66.30	0	3093090..3093362	+	90	119899101	grxC	azo2811	-	glutaredoxin
2810	 62.50	-1	3093432..3093887	+	151	119899102	secB	azo2812	-	preprotein translocase subunit SecB
2811	 72.04	+1	3093892..3094338	+	148	119899103	-	azo2813	-	hypothetical protein
2812	 71.11	0	3094335..3095324	+	329	119899104	gpsA	azo2814	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2813	 67.79	0	3095339..3095872	-	177	119899105	-	azo2815	-	tRNA/rRNA methylase
2814	 70.42	0	3095879..3096571	-	230	119899106	comF	azo2816	-	putative competence protein F
2815	 67.28	0	3096650..3097630	+	326	119899107	bioB	azo2817	-	biotin synthase
2816	 72.11	+1	3097630..3098547	+	305	119899108	bioC2	azo2818	-	putative biotin synthesis protein
2817	 67.28	0	3098555..3099211	+	218	119899109	ssm	azo2819	-	putative hydrolase
2818	 71.92	0	3099203..3099697	-	164	119899110	-	azo2820	-	putative acetyltransferase
2819	 66.27	0	3099739..3100743	-	334	119899111	hemB	azo2821	-	delta-aminolevulinic acid dehydratase
2820	 65.56	0	3100989..3101618	-	209	119899112	engB	azo2822	-	GTPase EngB
2821	 66.99	0	3101743..3102369	+	208	119899113	cc42	azo2823	-	cytochrome C4
2822	 70.80	0	3102434..3103303	-	289	119899114	-	azo2824	-	hypothetical protein
2823	 69.16	0	3103351..3104595	+	414	119899115	moeA2	azo2825	-	molybdopterin biosynthesis protein
2824	 67.26	0	3104643..3105311	+	222	119899116	rpiA	azo2826	-	ribose-5-phosphate isomerase A
2825	 62.89	-1	3105356..3106069	+	237	119899117	phoU	azo2827	-	phosphate uptake regulator
2826	 61.17	-1	3106151..3106423	-	90	119899118	-	azo2828	-	hypothetical protein
2827	 67.53	0	3106427..3108166	-	579	119899119	-	azo2829	-	GGDEF/PAS/PAC-domain-containing protein
2828	 67.11	0	3108245..3109603	-	452	119899120	argA	azo2830	-	N-acetylglutamate synthase
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.