IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2672	 66.25	0	2947962..2948441	+	159	119898964	-	azo2673	-	hypothetical protein
2673	 51.95	-2	2949219..2950808	-	529	119898965	-	azo2674	-	hypothetical protein
2674	 52.93	-2	2950840..2951982	-	380	119898966	-	azo2675	-	TDP-4-oxo-6-deoxy-D-glucose transaminase
2675	 54.52	-2	2952049..2952921	-	290	119898967	-	azo2676	-	putative methyltransferase
2676	 54.05	-2	2952918..2953337	-	139	119898968	-	azo2677	-	hypothetical protein
2677	 55.27	-2	2953334..2954254	-	306	119898969	-	azo2678	-	hypothetical protein
2678	 52.64	-2	2954285..2954947	-	220	119898970	-	azo2679	-	acyltransferase
2679	 53.40	-2	2954944..2955885	-	313	119898971	-	azo2680	-	glycosyltransferase
2680	 55.41	-2	2955882..2956574	-	230	119898972	-	azo2681	-	hypothetical protein
2681	 66.86	0	2957374..2957898	+	174	119898973	-	azo2682	-	hypothetical protein
2682	 64.64	0	2957907..2958251	+	114	119898974	-	azo2683	-	hypothetical protein
2683	 60.15	-1	2958597..2959409	-	270	119898975	-	azo2684	-	putative integrase
2684	 67.15	0	2960329..2962404	+	691	119898976	-	azo2685	-	GGDEF/EAL/PAS-domain-containing protein
2685	 59.48	-2	2962857..2963009	+	50	119898977	-	azo2687	-	hypothetical protein
2686	 61.88	-1	2963024..2963503	-	159	119898978	creA	azo2688	-	putative periplasmic protein [creA]
2687	 63.77	0	2963500..2963913	-	137	119898979	-	azo2689	-	hypothetical protein
2688	 68.33	0	2964056..2965018	+	320	119898980	-	azo2690	-	hypothetical protein
2689	 69.78	0	2965210..2967042	+	610	119898981	-	azo2691	-	GGDEF family protein
2690	 69.92	0	2967068..2968882	+	604	119898982	-	azo2692	-	GGDEF family protein
2691	 68.02	0	2969110..2970591	+	493	119898983	fliC2	azo2693	-	flagellin
2692	 61.27	-1	2970739..2971869	+	376	119898984	-	azo2694	-	nucleotide sugar aminotransferase
2693	 63.70	0	2971926..2973140	+	404	119898985	-	azo2695	-	hypothetical protein
2694	 60.35	-1	2973203..2974009	+	268	119898986	-	azo2696	-	hypothetical protein
2695	 60.50	-1	2974127..2975602	+	491	119898987	-	azo2697	-	hypothetical protein
2696	 61.76	-1	2975648..2976952	+	434	119898988	pepM	azo2698	-	putative phosphoenolpyruvate phosphomutase
2697	 67.38	0	2976949..2978073	+	374	119898989	-	azo2699	-	phosphonopyruvate decarboxylase, putative
2698	 69.55	0	2978078..2979187	+	369	119898990	-	azo2700	-	alcohol dehydrogenase
2699	 60.83	-1	2979203..2980453	+	416	119898991	-	azo2701	-	teichoic acid biosynthesis protein B
2700	 67.88	0	2980491..2984042	+	1183	119898992	-	azo2702	-	glycosyltransferase
2701	 70.97	0	2984043..2986367	-	774	119898993	-	azo2703	-	hypothetical protein
2702	 65.86	0	2986580..2988061	+	493	119898994	fliC3	azo2704	-	flagellin
2703	 62.72	-1	2988140..2988544	+	134	119898995	flaG	azo2705	-	flagellar protein
2704	 64.21	0	2988571..2989992	+	473	119898996	fliD	azo2706	-	flagellar hook-associated protein
2705	 65.94	0	2990004..2990414	+	136	119898997	fliS	azo2707	-	flagellar protein FliS
2706	 69.18	0	2990427..2990744	+	105	119898998	fliT	azo2708	-	flagellar-like protein FliT
2707	 72.22	+1	2990776..2991891	+	371	119898999	-	azo2709	-	hypothetical protein
2708	 69.84	0	2991881..2992258	+	125	119899000	-	azo2710	-	flagellar related protein
2709	 65.38	0	2992357..2993136	+	259	119899001	-	azo2711	-	hypothetical protein
2710	 68.63	0	2993380..2997147	+	1255	119899002	-	azo2712	-	GGDEF/PAS/PAC-domain-containing protein
2711	 61.28	-1	2997226..2997522	-	98	119899003	-	azo2713	-	flagellar hook-basal body complex protein FliE
2712	 67.88	0	2997698..2999176	-	492	119899004	fleR	azo2714	-	sigma-54 dependent response regulator
2713	 71.83	0	2999173..3000354	-	393	119899005	fleS	azo2715	-	putative sensory box sensor histidine kinase
2714	 68.27	0	3000514..3002202	+	562	119899006	fliF	azo2716	-	flagellar MS-ring protein
2715	 65.67	0	3002199..3003197	+	332	119899007	fliG	azo2717	-	flagellar motor switch protein FliG
2716	 73.36	+1	3003231..3003977	+	248	119899008	fliH	azo2718	-	flagellar assembly protein FliH
2717	 70.58	0	3003991..3005397	+	468	119899009	fliI	azo2719	-	ATP synthase
2718	 67.77	0	3005493..3005945	+	150	119899010	fliJ	azo2720	-	putative flagellar protein FliJ
2719	 73.75	+1	3006109..3007209	+	366	119899011	fliK	azo2721	-	putative flagellar hook-length control protein FliK
2720	 68.04	0	3007300..3007881	+	193	119899012	fliL	azo2722	-	putative flagellar basal body-associated protein FliL
2721	 64.69	0	3007896..3008906	+	336	119899013	fliM	azo2723	-	flagellar motor switch protein FliM
2722	 66.25	0	3008899..3009378	+	159	119899014	fliN	azo2724	-	flagellar motor switch FliN
2723	 71.30	0	3009540..3009863	+	107	119899015	fliO	azo2725	-	flagellar biosynthesis protein, FliO
2724	 65.12	0	3009853..3010629	+	258	119899016	fliP	azo2726	-	flagellar biosynthesis protein FliP
2725	 61.85	-1	3010643..3010912	+	89	119899017	fliQ	azo2727	-	flagellar biosynthesis protein FliQ
2726	 67.77	0	3010935..3011747	+	270	119899018	fliR	azo2728	-	flagellar biosynthesis protein FliR
2727	 69.96	0	3011751..3012236	-	161	119899019	-	azo2729	-	hypothetical protein
2728	 66.59	0	3012247..3013509	-	420	119899020	flgL	azo2730	-	flagellar hook-filament junction protein 3
2729	 67.52	0	3013521..3015512	-	663	119899021	flgK	azo2731	-	flagellar hook-filament junction protein 1
2730	 70.69	0	3015668..3016735	-	355	119899022	flgJ	azo2732	-	peptidoglycan hydrolase
2731	 69.45	0	3016818..3017930	-	370	119899023	flgI	azo2733	-	flagellar basal body P-ring protein
2732	 67.40	0	3017950..3018627	-	225	119899024	flgH	azo2734	-	flagellar L-ring protein precursor
2733	 66.54	0	3018650..3019432	-	260	119899025	flgG	azo2735	-	flagellar basal body rod protein FlgG
2734	 68.43	0	3019571..3020308	-	245	119899026	flgF	azo2736	-	flagellar basal-body rod protein FlgF
2735	 64.13	0	3020334..3021671	-	445	119899027	flgE	azo2737	-	FlgE protein
2736	 65.63	0	3021687..3022361	-	224	119899028	flgD	azo2738	-	basal-body rod modification protein FlgD
2737	 65.53	0	3022403..3022843	-	146	119899029	flgC	azo2739	-	flagellar basal-body rod protein FlgC
2738	 63.43	-1	3022865..3023266	-	133	119899030	flgB	azo2740	-	flagellar basal-body rod protein FlgB
2739	 73.54	+1	3023519..3024289	+	256	119899031	flgA	azo2741	-	chaperon for flagellar basal body P-ring formation
2740	 63.97	0	3024385..3024681	+	98	119899032	-	azo2742	-	putative negative regulator of flagellin synthesis FlgM
2741	 70.00	0	3024695..3025174	+	159	119899033	flgN	azo2743	-	putative chaperon of flagellar synthesis
2742	 69.26	0	3025253..3025792	-	179	119899034	-	azo2744	-	hypothetical protein
2743	 68.77	0	3025977..3026735	+	252	119899035	ompR2	azo2745	-	DNA-binding response regulator
2744	 71.99	+1	3026732..3028066	+	444	119899036	envZ2	azo2746	-	putative sensor histidine kinase
2745	 63.11	-1	3028173..3028706	-	177	119899037	-	azo2747	-	hypothetical protein
2746	 67.68	0	3029233..3031296	+	687	119899038	-	azo2748	-	putative sensory box histidine kinase
2747	 65.87	0	3031290..3031919	+	209	119899039	vsrD2	azo2749	-	LuxR family transcriptional regulator
2748	 73.02	+1	3031885..3033474	-	529	119899040	glpA	azo2750	-	putative glycerol-3-phosphate dehydrogenase
2749	 72.43	+1	3033471..3034961	-	496	119899041	glpK	azo2751	-	glycerol kinase
2750	 69.08	0	3035084..3035953	+	289	119899042	-	azo2752	-	hypothetical protein
2751	 61.98	-1	3036044..3036406	+	120	119899043	-	azo2753	-	hypothetical protein
2752	 67.72	0	3036403..3037257	+	284	119899044	sseA	azo2754	-	putative thiosulfate sulfurtransferase
2753	 67.52	0	3037292..3038107	-	271	119899045	murI	azo2755	-	glutamate racemase
2754	 63.83	0	3038104..3039303	-	399	119899046	-	azo2756	-	tyrosyl-tRNA synthetase
2755	 66.89	0	3039381..3040709	+	442	119899047	-	azo2757	-	metalloprotease precursor
2756	 57.55	-2	3040778..3041128	-	116	119899048	-	azo2758	-	iron-sulfur cluster insertion protein ErpA
2757	 63.10	-1	3041369..3041761	-	130	119899049	rpsI	azo2759	-	30S ribosomal protein S9
2758	 60.37	-1	3041775..3042203	-	142	119899050	rplM	azo2760	-	50S ribosomal protein L13
2759	 65.90	0	3042732..3043124	+	130	119899051	-	azo2761	-	hypothetical protein
2760	 66.34	0	3043258..3043878	-	206	119899052	-	azo2762	-	ubiquinone biosynthesis protein
2761	 66.85	0	3043881..3044411	-	176	119899053	-	azo2763	-	hypothetical protein
2762	 61.93	-1	3044471..3044998	-	175	119899054	-	azo2764	-	dinucleoside polyphosphate hydrolase
2763	 65.98	0	3045152..3046897	+	581	119899055	-	azo2765	-	prolyl-tRNA synthetase
2764	 69.79	0	3046921..3047592	+	223	119899056	-	azo2766	-	soluble lytic murein transglycosylase precursor
2765	 67.17	0	3047582..3048178	-	198	119899057	-	azo2767	-	hypothetical protein
2766	 70.11	0	3048521..3049915	+	464	119899058	yfhK	azo2768	-	putative two-component system sensor kinase
2767	 74.17	+1	3049908..3050480	+	190	119899059	-	azo2769	-	hypothetical protein
2768	 69.24	0	3050477..3051874	+	465	119899060	yfhA	azo2770	-	putative two component transcriptional regulator
2769	 68.84	0	3051907..3053010	+	367	119899061	-	azo2771	-	hypothetical protein
2770	 64.66	0	3053030..3054127	-	365	119899062	-	azo2772	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
2771	 68.63	0	3054144..3054806	-	220	119899063	-	azo2773	-	hypothetical protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.