IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2549	 68.66	0	2819724..2820674	+	316	119898841	mdcF3	azo2550	-	putative malonate transporter
2550	 68.91	0	2821091..2821981	+	296	119898842	-	azo2551	-	hypothetical protein
2551	 63.15	-1	2822144..2823451	+	435	119898843	pilU1	azo2552	-	twitching motility protein
2552	 72.01	+1	2823562..2824104	+	180	119898844	-	azo2553	-	hypothetical protein
2553	 69.64	0	2824434..2825978	+	514	119898845	nodT	azo2554	-	putative outer membrane efflux protein
2554	 70.72	0	2825984..2826748	+	254	119898846	-	azo2555	-	HlyD family secretion protein
2555	 70.45	0	2826820..2832576	+	1918	119898847	-	azo2556	-	hypothetical protein
2556	 73.79	+1	2832576..2833937	+	453	119898848	-	azo2557	-	HlyD family secretion protein
2557	 71.78	0	2833940..2836051	+	703	119898849	-	azo2558	-	HlyD domain-containing protein
2558	 66.67	0	2836162..2836581	+	139	119898850	-	azo2559	-	hypothetical protein
2559	 64.91	0	2836767..2837564	+	265	119898851	-	azo2560	-	hypothetical protein
2560	 67.81	0	2837663..2839060	-	465	119898852	-	azo2561	-	hypothetical protein
2561	 65.67	0	2839343..2840350	+	335	119898853	ccp	azo2562	-	putative cytochrome c peroxidase
2562	 66.41	0	2840530..2840916	+	128	119898854	-	azo2563	-	hypothetical protein
2563	 74.65	+1	2840924..2841424	+	166	119898855	-	azo2564	-	putative RNA polymerase sigma factor
2564	 74.73	+1	2841421..2842239	+	272	119898856	-	azo2565	-	hypothetical protein
2565	 71.67	0	2842255..2843214	-	319	119898857	-	azo2566	-	hypothetical protein
2566	 67.96	0	2843306..2844313	-	335	119898858	-	azo2567	-	LysR family transcriptional regulator
2567	 72.90	+1	2844563..2845765	+	400	119898859	-	azo2568	-	membrane fusion protein
2568	 67.64	0	2845776..2848967	+	1063	119898860	-	azo2569	-	RND efflux transporter, permease protein
2569	 73.54	+1	2848984..2850510	+	508	119898861	opcM2	azo2570	-	outer membrane efflux protein
2570	 71.37	0	2850539..2851069	-	176	119898862	-	azo2571	-	hypothetical protein
2571	 66.20	0	2851066..2851710	-	214	119898863	-	azo2572	-	hypothetical protein
2572	 72.64	+1	2851794..2853032	-	412	119898864	fsr	azo2573	-	putative fosmidomycin resistance protein
2573	 70.10	0	2853125..2853910	+	261	119898865	-	azo2574	-	AraC family transcriptional regulator
2574	 70.39	0	2853962..2856457	-	831	119898866	gacS	azo2575	-	putative two-component hybrid sensor and regulator
2575	 69.14	0	2856467..2857276	-	269	119898867	dapB	azo2576	-	dihydrodipicolinate reductase
2576	 62.94	-1	2857314..2857823	-	169	119898868	omlA	azo2577	-	putative outer membrane lipoprotein OmlA
2577	 60.96	-1	2857844..2858281	+	145	119898869	fur	azo2578	-	putative ferric uptake regulation protein
2578	 71.70	0	2858307..2859974	-	555	119898870	recN	azo2579	-	DNA repair protein
2579	 65.31	0	2860012..2860896	-	294	119898871	ppnK	azo2580	-	inorganic polyphosphate/ATP-NAD kinase
2580	 64.53	0	2861000..2862028	+	342	119898872	hrcA	azo2581	-	heat-inducible transcription repressor
2581	 69.96	0	2862075..2863166	+	363	119898873	hemH	azo2582	-	ferrochelatase
2582	 64.99	0	2863166..2863522	+	118	119898874	-	azo2583	-	hypothetical protein
2583	 65.78	0	2863580..2864590	+	336	119898875	-	azo2584	-	hypothetical protein
2584	 62.12	-1	2864625..2865989	-	454	119898876	yloP	azo2585	-	putative protein kinase
2585	 64.76	0	2866089..2866193	+	34	119898877	-	azo2586	-	hypothetical protein
2586	 65.98	0	2866190..2867509	+	439	119898878	-	azo2587	-	N-ethylammeline chlorohydrolase
2587	 65.69	0	2867629..2868345	+	238	119898879	ompA1	azo2588	-	outer membrane protein A precursor
2588	 63.11	-1	2868451..2869152	+	233	119898880	ubiG	azo2589	-	3-demethylubiquinone-9 3-methyltransferase
2589	 70.76	0	2869577..2870845	-	422	119898881	-	azo2590	-	hypothetical protein
2590	 68.66	0	2871202..2873805	+	867	119898882	-	azo2591	-	hypothetical protein
2591	 67.54	0	2873818..2874735	+	305	119898883	-	azo2592	-	hypothetical protein
2592	 75.24	+1	2874754..2876877	+	707	119898884	-	azo2593	-	hypothetical protein
2593	 70.71	0	2876874..2878430	+	518	119898885	-	azo2594	-	hypothetical protein
2594	 68.53	0	2878452..2879951	+	499	119898886	-	azo2595	-	hypothetical protein
2595	 76.73	+2	2879974..2880957	+	327	119898887	-	azo2596	-	hypothetical protein
2596	 76.57	+2	2880971..2882566	+	531	119898888	-	azo2597	-	hypothetical protein
2597	 70.78	0	2882757..2884553	+	598	119898889	-	azo2598	-	hypothetical protein
2598	 70.63	0	2884563..2884940	-	125	119898890	abp1	azo2599	-	putative auxin-binding protein 1 precursor
2599	 74.02	+1	2885097..2885993	+	298	119898891	-	azo2600	-	LysR family transcriptional regulator
2600	 65.05	0	2886006..2886314	-	102	119898892	-	azo2601	-	putative ferredoxin subunit of nitrite reductase
2601	 62.40	-1	2886484..2886741	-	85	119898893	infA1	azo2602	-	translation initiation factor IF-1
2602	 60.29	-1	2886879..2887082	-	67	119898894	-	azo2603	-	cold shock-like protein
2603	 73.55	+1	2887497..2888339	+	280	119898895	-	azo2604	-	hypothetical protein
2604	 68.58	0	2888355..2888876	-	173	119898896	-	azo2605	-	hypothetical protein
2605	 67.35	0	2889090..2889527	+	145	119898897	-	azo2606	-	hypothetical protein
2606	 73.42	+1	2889532..2890509	-	325	119898898	panE2	azo2607	-	2-dehydropantoate 2-reductase
2607	 64.59	0	2890560..2891330	-	256	119898899	-	azo2608	-	hypothetical protein
2608	 66.15	0	2891520..2892491	-	323	119898900	-	azo2609	-	endonuclease/exonuclease/phosphatase family protein
2609	 67.65	0	2892605..2894734	-	709	119898901	fhuA2	azo2610	-	putative ferrichrome-iron TonB-dependent receptor
2610	 71.07	0	2894837..2895472	-	211	119898902	-	azo2611	-	hypothetical protein
2611	 69.55	0	2895707..2896642	-	311	119898903	-	azo2612	-	GAF/GGDEF-domain-containing protein
2612	 65.42	0	2896686..2897087	-	133	119898904	-	azo2613	-	hypothetical protein
2613	 64.04	0	2897216..2897596	-	126	119898905	-	azo2614	-	hypothetical protein
2614	 67.92	0	2897663..2898382	-	239	119898906	-	azo2615	-	hypothetical protein
2615	 70.42	0	2898514..2898939	-	141	119898907	-	azo2616	-	lactoylglutathione lyase
2616	 68.59	0	2898954..2899577	-	207	119898908	-	azo2617	-	HAD superfamily hydrolase
2617	 70.55	0	2899574..2900011	-	145	119898909	soxR	azo2618	-	redox-sensitive transcriptional activator
2618	 71.45	0	2900083..2900940	+	285	119898910	-	azo2619	-	putative methyltransferase
2619	 64.57	0	2900950..2901330	-	126	119898911	-	azo2620	-	hypothetical protein
2620	 64.25	0	2901512..2902048	-	178	119898912	-	azo2621	-	hypothetical protein
2621	 65.01	0	2902117..2903265	-	382	119898913	-	azo2622	-	hypothetical protein
2622	 50.62	-2	2903667..2904227	-	186	119898914	-	azo2623	-	hypothetical protein
2623	 60.23	-1	2904323..2904757	+	144	119898915	-	azo2624	-	putative transposase
2624	 66.67	0	2904840..2904950	+	36	119898916	-	azo2625	-	putative transposase
2625	 58.92	-2	2904985..2905281	+	98	119898917	-	azo2626	-	putative transposase
2626	 48.54	-2	2905435..2906151	-	238	119898918	-	azo2627	-	hypothetical protein
2627	 47.33	-2	2906296..2906745	-	149	119898919	-	azo2628	-	hypothetical protein
2628	 49.15	-2	2907060..2907413	-	117	119898920	-	azo2629	-	hypothetical protein
2629	 72.46	+1	2907867..2911886	-	1339	119898921	cobN	azo2630	-	cobaltochelatase
2630	 66.67	0	2911883..2912239	-	118	119898922	-	azo2631	-	hypothetical protein
2631	 69.70	0	2912250..2912711	-	153	119898923	-	azo2632	-	hypothetical protein
2632	 72.44	+1	2913014..2913775	+	253	119898924	tam	azo2633	-	trans-aconitate 2-methyltransferase
2633	 72.19	+1	2913806..2914276	-	156	119898925	-	azo2634	-	hypothetical protein
2634	 67.78	0	2914273..2914899	-	208	119898926	-	azo2635	-	hypothetical protein
2635	 71.81	0	2915051..2915770	-	239	119898927	-	azo2636	-	putative CbbY family protein
2636	 60.89	-1	2915888..2916406	-	172	119898928	-	azo2637	-	hypothetical protein
2637	 65.28	0	2916466..2918697	-	743	119898929	-	azo2638	-	ATPase
2638	 61.32	-1	2918694..2919161	-	155	119898930	-	azo2639	-	hypothetical protein
2639	 62.46	-1	2919238..2920236	+	332	119898931	mdcH	azo2640	-	putative transcriptional factor
2640	 52.98	-2	2920329..2921015	-	228	119898932	-	azo2641	-	hypothetical protein
2641	 57.58	-2	2921150..2921314	-	54	119898933	-	azo2642	-	hypothetical protein
2642	 65.25	0	2921344..2921907	-	187	119898934	-	azo2643	-	putative dual specificity protein phosphatase
2643	 66.49	0	2922087..2923211	+	374	119898935	draG2	azo2644	-	putative ADP-ribosyl-[dinitrogen reductase] hydrolase
2644	 62.08	-1	2923248..2923661	+	137	119898936	-	azo2645	-	hypothetical protein
2645	 57.49	-2	2923798..2924244	+	148	119898937	-	azo2646	-	hypothetical protein
2646	 73.87	+1	2924331..2925149	-	272	119898938	dlhH	azo2647	-	putative carboxymethylenebutenolidase
2647	 71.79	0	2925146..2926453	-	435	119898939	-	azo2648	-	MFS permease
2648	 69.94	0	2926624..2928333	-	569	119898940	-	azo2649	-	GGDEF family protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.