IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
204	 72.69	+1	226835..228079	-	414	119896496	hipO1	azo0205	-	hippurate hydrolase
205	 69.23	0	228076..228660	-	194	119896497	-	azo0206	-	AraC family transcriptional regulator
206	 68.91	0	228700..229056	+	118	119896498	-	azo0207	-	hypothetical protein
207	 67.65	0	229064..229267	-	67	119896499	-	azo0208	-	hypothetical protein
208	 71.63	0	229633..230862	-	409	119896500	agaE	azo0209	-	sarcosine oxidase, beta subunit
209	 73.83	+1	230859..232241	-	460	119896501	ooxA	azo0210	-	putative opine oxidase subunit A
210	 76.06	+1	232223..232552	-	109	119896502	-	azo0211	-	hypothetical protein
211	 61.51	-1	232564..233067	-	167	119896503	prp	azo0212	-	proline dehydrogenase transcriptional activator
212	 70.07	0	233142..234524	-	460	119896504	-	azo0213	-	hypothetical protein
213	 72.72	+1	235059..235934	-	291	119896505	-	azo0214	-	acetyltransferase
214	 70.51	0	236153..237637	+	494	119896506	aldH	azo0215	-	putative aldehyde dehydrogenase (NAD+)
215	 63.81	0	237835..238500	+	221	119896507	hadL	azo0216	-	haloalkanoic acid dehalogenase
216	 71.00	0	238541..239833	+	430	119896508	ordL	azo0217	-	FAD dependent oxidoreductase family protein
217	 69.40	0	239850..241457	+	535	119896509	dppA	azo0218	-	putative dipeptide transport system, periplasmic-binding protein
218	 71.37	0	241462..242418	+	318	119896510	dppB	azo0219	-	putative dipeptide transport system, permease protein
219	 72.37	+1	242415..243290	+	291	119896511	dppC	azo0220	-	ABC transporter, permease protein
220	 73.02	+1	243283..245109	+	608	119896512	dppD	azo0221	-	putative dipeptide transport system, ATP-binding protein
221	 71.22	0	245317..246789	+	490	119896513	gabD1	azo0222	-	succinate-semialdehyde dehydrogenase [NAD(P)+]
222	 68.29	0	247001..247369	+	122	119896514	-	azo0223	-	hypothetical protein
223	 77.75	+2	247500..248717	+	405	119896515	-	azo0224	-	outer membrane efflux protein
224	 71.86	0	248714..249310	+	198	119896516	-	azo0225	-	hypothetical protein
225	 73.39	+1	249307..250452	+	381	119896517	-	azo0226	-	hypothetical protein
226	 69.83	0	250466..253597	+	1043	119896518	czcA1	azo0227	-	putative cation efflux system protein
227	 68.69	0	253594..254088	+	164	119896519	-	azo0228	-	hypothetical protein
228	 66.02	0	254346..256517	+	723	119896520	fhuA1	azo0229	-	ferrichrome-iron TonB-dependent receptor
229	 68.93	0	256540..257289	+	249	119896521	-	azo0230	-	hypothetical protein
230	 67.24	0	257937..259160	+	407	119896522	-	azo0231	-	hypothetical protein
231	 68.09	0	259217..260059	+	280	119896523	exbB1	azo0232	-	putative biopolymer transport protein ExbB
232	 65.97	0	260085..260513	+	142	119896524	exbD1	azo0233	-	putative biopolymer transport protein ExbD
233	 65.02	0	260535..260960	+	141	119896525	exbD2	azo0234	-	putative biopolymer transport protein ExbD
234	 70.99	0	260989..261636	+	215	119896526	-	azo0235	-	hypothetical protein
235	 67.94	0	261880..262902	-	340	119896527	add	azo0236	-	adenosine deaminase
236	 73.89	+1	262974..263831	-	285	119896528	npd1	azo0237	-	putative NAD-dependent deacetylase
237	 73.39	+1	263828..264958	-	376	119896529	-	azo0238	-	hypothetical protein
238	 77.60	+2	264970..266250	-	426	119896530	-	azo0239	-	hypothetical protein
239	 67.54	0	266442..267473	+	343	119896531	dctP1	azo0240	-	putative C4-dicarboxylate-binding periplasmic protein
240	 67.48	0	267570..268058	+	162	119896532	dctQ1	azo0241	-	DctQ1 protein
241	 69.00	0	268055..269338	+	427	119896533	dctM1	azo0242	-	TRAP-type C4-dicarboxylate transport system, large permease component
242	 68.37	0	269367..270011	-	214	119896534	uidR	azo0243	-	TetR family transcriptional regulator
243	 71.74	0	270224..271426	+	400	119896535	-	azo0244	-	membrane fusion protein
244	 67.17	0	271438..274596	+	1052	119896536	-	azo0245	-	RND efflux transporter, permease protein
245	 73.15	+1	274611..276014	+	467	119896537	oprM1	azo0246	-	outer membrane efflux protein
246	 65.02	0	276172..276657	+	161	119896538	bfr1	azo0247	-	putative bacterioferritin
247	 65.13	0	276847..277365	+	172	119896539	dksA1	azo0248	-	dnaK suppressor protein
248	 73.58	+1	277409..277567	+	52	119896540	-	azo0249	-	hypothetical protein
249	 72.57	+1	277561..278289	-	242	119896541	-	azo0250	-	flavodoxin reductase
250	 78.23	+2	278417..279895	+	492	119896542	-	azo0251	-	hypothetical protein
251	 76.11	+2	279963..281318	+	451	119896543	-	azo0252	-	hypothetical protein
252	 71.73	0	281341..282051	-	236	119896544	-	azo0253	-	hypothetical protein
253	 75.11	+1	282048..282746	-	232	119896545	-	azo0254	-	polysaccharide deacetylase
254	 76.78	+2	282948..283649	-	233	119896546	-	azo0255	-	hypothetical protein
255	 73.80	+1	283646..286057	-	803	119896547	-	azo0256	-	hypothetical protein
256	 73.40	+1	286054..286632	-	192	119896548	-	azo0257	-	hypothetical protein
257	 71.92	0	286629..287561	-	310	119896549	-	azo0258	-	acetyltransferase
258	 75.64	+1	287558..287869	-	103	119896550	-	azo0259	-	hypothetical protein
259	 74.00	+1	287866..289215	-	449	119896551	-	azo0260	-	hypothetical protein
260	 74.46	+1	289232..289885	-	217	119896552	-	azo0261	-	hypothetical protein
261	 67.02	0	289885..290169	-	94	119896553	-	azo0262	-	hypothetical protein
262	 75.00	+1	290292..291683	-	463	119896554	-	azo0263	-	two-component system histidine kinase
263	 72.75	+1	291680..292336	-	218	119896555	qseB1	azo0264	-	transcriptional regulatory protein
264	 64.10	0	292491..292763	+	90	119896556	-	azo0265	-	hypothetical protein
265	 69.16	0	292777..293298	+	173	119896557	-	azo0266	-	cytochrome b561 family protein
266	 78.28	+2	293415..294473	+	352	119896558	czcB	azo0267	-	putative membrane fusion protein
267	 70.92	0	294470..297574	+	1034	119896559	czcA2	azo0268	-	putative cation efflux system protein
268	 72.06	+1	297571..297885	+	104	119896560	-	azo0269	-	hypothetical protein
269	 78.12	+2	297885..299159	+	424	119896561	-	azo0270	-	hypothetical protein
270	 64.78	0	299301..300887	-	528	119896562	-	azo0271	-	hypothetical protein
271	 72.40	+1	301090..301368	-	92	119896563	-	azo0272	-	hypothetical protein
272	 72.89	+1	301346..301972	-	208	119896564	sigW	azo0273	-	ECF family RNA polymerase sigma factor
273	 74.60	+1	301969..302409	-	146	119896565	-	azo0274	-	hypothetical protein
274	 70.18	0	302583..302924	+	113	119896566	-	azo0275	-	hypothetical protein
275	 68.36	0	303050..303640	+	196	119896567	-	azo0276	-	hypothetical protein
276	 59.31	-2	303727..304134	+	135	119896568	-	azo0277	-	hypothetical protein
277	 72.75	+1	304110..304865	-	251	119896569	-	azo0278	-	hypothetical protein
278	 75.93	+1	305070..305825	+	251	119896570	-	azo0279	-	hypothetical protein
279	 74.01	+1	305877..308081	+	734	119896571	-	azo0280	-	hypothetical protein
280	 71.94	0	308084..308728	+	214	119896572	-	azo0281	-	hypothetical protein
281	 76.46	+2	308721..309476	+	251	119896573	-	azo0282	-	hypothetical protein
282	 74.55	+1	309473..310132	-	219	119896574	-	azo0283	-	hypothetical protein
283	 76.71	+2	310129..311193	-	354	119896575	-	azo0284	-	putative Beta-ketoacyl synthase family protein
284	 66.30	0	311190..311462	-	90	119896576	-	azo0285	-	acyl carrier protein
285	 73.37	+1	311480..312718	-	412	119896577	-	azo0286	-	putative ABC transporter permease
286	 67.85	0	312733..313155	-	140	119896578	-	azo0287	-	hypothetical protein
287	 65.79	0	313152..313379	-	75	119896579	-	azo0288	-	hypothetical protein
288	 73.59	+1	313482..314405	-	307	119896580	-	azo0289	-	ABC transporter ATP-binding protein
289	 71.04	0	314413..315417	-	334	119896581	-	azo0290	-	hypothetical protein
290	 73.23	+1	315418..315813	-	131	119896582	-	azo0291	-	hypothetical protein
291	 71.08	0	315826..316980	-	384	119896583	darB	azo0292	-	3-oxoacyl-(acyl carrier protein) synthase III
292	 72.51	+1	316973..317914	-	313	119896584	darA	azo0293	-	dialkylrecorsinol condensing enzyme
293	 70.19	0	317928..319742	-	604	119896585	-	azo0294	-	putative penicillin-binding protein
294	 73.56	+1	320022..320456	+	144	119896586	-	azo0295	-	hypothetical protein
295	 68.60	0	320512..321492	-	326	119896587	-	azo0296	-	metallo-beta-lactamase superfamily protein
296	 72.75	+1	321614..321958	-	114	119896588	-	azo0297	-	hypothetical protein
297	 68.31	0	321964..322572	-	202	119896589	paaY	azo0298	-	phenyl acetic acid degradation protein
298	 67.93	0	322766..324430	-	554	119896590	paaZ	azo0299	-	dehydrogenase
299	 68.91	0	324719..325522	+	267	119896591	paaG1	azo0300	-	enoyl-CoA hydratase
300	 71.38	0	325526..327073	+	515	119896592	paaH1	azo0301	-	3-hydroxybutyryl-CoA dehydrogenase
301	 65.82	0	327066..327536	+	156	119896593	paaI	azo0302	-	phenylacetic acid degradation protein PaaI
302	 65.91	0	327612..328934	+	440	119896594	paaK	azo0303	-	phenylacetate--CoA ligase
303	 67.47	0	328992..329987	+	331	119896595	paaA	azo0304	-	phenylacetate-CoA oxygenase subunit PaaA
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.