IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2392	 70.48	0	2632087..2632899	+	270	119898684	tauC	azo2393	-	putative sulfonate transport system, permease protein
2393	 72.57	+1	2632917..2633645	+	242	119898685	-	azo2394	-	hypothetical protein
2394	 67.64	0	2633703..2635040	+	445	119898686	phaE	azo2395	-	phenylacetate--CoA ligase
2395	 69.46	0	2635527..2637713	+	728	119898687	-	azo2396	-	putative TonB-dependent receptor
2396	 72.24	+1	2637720..2638544	-	274	119898688	-	azo2397	-	putative signaling protein
2397	 71.76	0	2638757..2639365	+	202	119898689	-	azo2398	-	hypothetical protein
2398	 68.81	0	2639458..2640438	+	326	119898690	cysK	azo2399	-	cysteine synthase A
2399	 66.13	0	2640828..2643044	+	738	119898691	-	azo2400	-	putative TonB-dependent receptor protein
2400	 71.40	0	2643054..2643623	+	189	119898692	-	azo2401	-	hypothetical protein
2401	 69.23	0	2643620..2646658	+	1012	119898693	barA	azo2402	-	putative sensor-regulator protein
2402	 67.77	0	2646655..2647560	+	301	119898694	wspR2	azo2403	-	two-component response regulator
2403	 74.37	+1	2647703..2649856	+	717	119898695	-	azo2404	-	hypothetical protein
2404	 68.49	0	2649868..2650305	-	145	119898696	ohr	azo2405	-	organic hydroperoxide resistance protein
2405	 70.18	0	2650430..2654014	-	1194	119898697	-	azo2406	-	2-oxoacid ferredoxin oxidoreductase
2406	 66.46	0	2654233..2654715	+	160	119898698	bkdR	azo2407	-	bkd operon transcriptional regulator
2407	 69.18	0	2654882..2657899	+	1005	119898699	-	azo2408	-	sensor protein
2408	 68.41	0	2657913..2659973	-	686	119898700	-	azo2409	-	putative sodium:solute sympoter
2409	 68.34	0	2660014..2662218	-	734	119898701	-	azo2410	-	DNA polymerase III epsilon chain-like protein
2410	 63.47	-1	2662346..2662720	-	124	119898702	yycF	azo2411	-	transcriptional regulatory protein
2411	 67.36	0	2662752..2665499	-	915	119898703	-	azo2412	-	two-component system sensor protein
2412	 65.66	0	2665499..2665696	-	65	119898704	-	azo2413	-	hypothetical protein
2413	 64.99	0	2665962..2667926	-	654	119898705	acsB	azo2414	-	acetyl-CoA synthetase
2414	 65.13	0	2668208..2669899	+	563	119898706	fumB	azo2415	-	putative fumarate hydratase
2415	 62.89	-1	2669865..2670155	-	96	119898707	-	azo2416	-	hypothetical protein
2416	 70.95	0	2670306..2671496	-	396	119898708	nnrS	azo2417	-	putative heme-Cu-containing membrane protein
2417	 68.77	0	2671716..2672762	+	348	119898709	gapB	azo2418	-	putative D-erythrose 4-phosphate dehydrogenase
2418	 68.54	0	2672763..2673671	-	302	119898710	nahR1	azo2419	-	putative LysR-type transcriptional regulator NahR
2419	 68.98	0	2673841..2674878	+	345	119898711	nagI	azo2420	-	gentisate 1,2-dioxygenase
2420	 66.53	0	2674933..2675643	+	236	119898712	nagK	azo2421	-	fumarylpyruvate hydrolase
2421	 66.75	0	2675686..2676879	+	397	119898713	nahG	azo2422	-	salicylate hydroxylase
2422	 67.91	0	2676985..2677626	+	213	119898714	nagL1	azo2423	-	maleylpyruvate isomerase
2423	 67.27	0	2677699..2678685	+	328	119898715	dctP3	azo2424	-	putative C4-dicarboxylate-binding periplasmic protein
2424	 66.27	0	2679037..2679540	+	167	119898716	dctQ4	azo2425	-	putative TRAP-type C4-dicarboxylate transport system, small permease component
2425	 66.74	0	2679537..2680814	+	425	119898717	dctM4	azo2426	-	putative TRAP-type C4-dicarboxylate transport system, large permease
2426	 73.43	+1	2680831..2681421	-	196	119898718	-	azo2427	-	hypothetical protein
2427	 64.29	0	2681551..2682474	-	307	119898719	-	azo2428	-	hypothetical protein
2428	 62.50	-1	2682655..2682846	-	63	119898720	nahJ	azo2429	-	4-oxalocrotonate tautomerase
2429	 66.54	0	2683055..2683843	-	262	119898721	nahK	azo2430	-	4-oxalocrotonate decarboxylase
2430	 65.61	0	2683840..2684880	-	346	119898722	nahM	azo2431	-	4-hydroxy-2-ketovalerate aldolase
2431	 65.58	0	2684895..2685815	-	306	119898723	nahO	azo2432	-	acetaldehyde dehydrogenase
2432	 70.57	0	2685848..2686642	-	264	119898724	-	azo2433	-	Short-chain dehydrogenase family protein
2433	 66.41	0	2686737..2687519	-	260	119898725	nahL	azo2434	-	2-oxopent-4-enoate hydratase
2434	 67.77	0	2687635..2689089	-	484	119898726	nahI	azo2435	-	2-hydroxymuconic semialdehyde dehydrogenase
2435	 68.04	0	2689143..2689580	-	145	119898727	-	azo2436	-	hypothetical protein
2436	 67.64	0	2689738..2690457	+	239	119898728	aphS	azo2437	-	transcriptional regulator
2437	 64.30	0	2690810..2691739	-	309	119898729	lapB2	azo2438	-	catechol 2,3-dioxygenase (metapyrocatechase)
2438	 66.76	0	2691869..2692924	-	351	119898730	poxF	azo2439	-	phenol hydroxylase, subunit P5
2439	 65.00	0	2693134..2693493	-	119	119898731	poxE	azo2440	-	phenol hydroxylase, subunit P4
2440	 62.81	-1	2693966..2695519	-	517	119898732	poxD	azo2441	-	phenol hydroxylase, subunit P3
2441	 63.70	0	2695548..2695817	-	89	119898733	poxC	azo2442	-	phenol hydrolase, subunit P2
2442	 66.57	0	2695828..2696823	-	331	119898734	poxB	azo2443	-	phenol hydroxylase, subunit P1
2443	 68.18	0	2696900..2697163	-	87	119898735	poxA	azo2444	-	putative phenol hydrolase, subunit P0
2444	 69.81	0	2697463..2697780	-	105	119898736	poxG	azo2445	-	ferredoxin-like protein
2445	 68.84	0	2698080..2699780	+	566	119898737	poxR	azo2446	-	positive regulator of phenol-degratives genes
2446	 68.71	0	2699777..2700655	-	292	119898738	pobR1	azo2447	-	PobR regulator
2447	 65.24	0	2700822..2702009	+	395	119898739	pobA	azo2448	-	4-hydroxybenzoate 3-monooxygenase
2448	 68.83	0	2702082..2703143	-	353	119898740	-	azo2449	-	putative two component response regulator
2449	 68.99	0	2703151..2705901	-	916	119898741	-	azo2450	-	putative two-component system sensor protein
2450	 71.17	0	2706261..2706971	+	236	119898742	-	azo2451	-	Short-chain dehydrogenase family protein
2451	 67.57	0	2707060..2707500	+	146	119898743	-	azo2452	-	hypothetical protein
2452	 69.78	0	2707510..2708151	-	213	119898744	-	azo2453	-	negative transcriptional regulator
2453	 71.41	0	2708500..2709174	+	224	119898745	-	azo2454	-	hypothetical protein
2454	 67.80	0	2709188..2709628	-	146	119898746	rcp2	azo2455	-	putative two-component response regulator
2455	 68.46	0	2709625..2711352	-	575	119898747	cph1	azo2456	-	putative two-component system sensor protein
2456	 69.91	0	2711355..2713823	-	822	119898748	-	azo2457	-	putative sensory box histidine kinase
2457	 71.07	0	2714039..2714560	-	173	119898749	-	azo2458	-	LuxR family transcriptional regulator
2458	 77.41	+2	2715013..2716176	+	387	119898750	-	azo2459	-	hypothetical protein
2459	 76.86	+2	2716200..2717258	+	352	119898751	-	azo2460	-	hypothetical protein
2460	 73.38	+1	2717280..2718590	+	436	119898752	-	azo2461	-	hypothetical protein
2461	 72.44	+1	2718645..2720618	+	657	119898753	-	azo2462	-	hypothetical protein
2462	 72.70	+1	2720645..2721274	+	209	119898754	-	azo2463	-	hypothetical protein
2463	 68.74	0	2721255..2722364	+	369	119898755	-	azo2464	-	hypothetical protein
2464	 75.56	+1	2722381..2723358	+	325	119898756	-	azo2465	-	hypothetical protein
2465	 76.04	+1	2723377..2724144	+	255	119898757	-	azo2466	-	hypothetical protein
2466	 75.52	+1	2724141..2725190	+	349	119898758	-	azo2467	-	hypothetical protein
2467	 71.94	0	2725351..2726754	+	467	119898759	-	azo2468	-	putative transcriptional regulator
2468	 66.43	0	2726765..2727181	-	138	119898760	-	azo2469	-	hypothetical protein
2469	 68.27	0	2727286..2728407	-	373	119898761	lldD	azo2470	-	L-lactate dehydrogenase (cytochrome)
2470	 69.37	0	2728444..2729406	-	320	119898762	panE1	azo2471	-	2-dehydropantoate 2-reductase
2471	 65.70	0	2729490..2730527	-	345	119898763	dctP4	azo2472	-	putative C4-dicarboxylate-binding periplasmic protein
2472	 70.03	0	2730630..2732087	-	485	119898764	xylC	azo2473	-	benzaldehyde dehydrogenase (NAD+)
2473	 68.25	0	2732140..2733846	-	568	119898765	alsS	azo2474	-	acetolactate synthase catalytic subunit
2474	 65.55	0	2733998..2734894	-	298	119898766	dntR	azo2475	-	LysR family transcriptional regulator
2475	 70.83	0	2735125..2736588	+	487	119898767	rdxA	azo2476	-	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
2476	 63.25	-1	2737170..2737286	-	38	119898768	-	azo2477	-	hypothetical protein
2477	 72.57	+1	2737435..2738619	+	394	119898769	-	azo2478	-	putative permease, member of the MFS transporter
2478	 63.28	-1	2738628..2739335	-	235	119898770	-	azo2479	-	hypothetical protein
2479	 69.60	0	2739453..2739998	-	181	119898771	-	azo2480	-	TetR family transcriptional regulator
2480	 69.23	0	2740029..2740652	+	207	119898772	-	azo2481	-	hypothetical protein
2481	 69.12	0	2740640..2745688	-	1682	119898773	-	azo2482	-	putative hybrid sensor and regulator
2482	 68.30	0	2745706..2746377	-	223	119898774	-	azo2483	-	hypothetical protein
2483	 66.93	0	2746361..2747515	-	384	119898775	-	azo2484	-	putative response regulator
2484	 66.28	0	2747681..2747938	-	85	119898776	-	azo2485	-	hypothetical protein
2485	 74.54	+1	2747955..2750558	-	867	119898777	ppsA2	azo2486	-	putative phosphoenolpyruvate synthase
2486	 67.32	0	2750555..2751166	-	203	119898778	-	azo2487	-	TetR family transcriptional regulator
2487	 57.32	-2	2751342..2751662	-	106	119898779	-	azo2488	-	hypothetical protein
2488	 69.43	0	2751828..2753672	-	614	119898780	-	azo2489	-	putative transport protein
2489	 69.23	0	2753758..2754147	-	129	119898781	txn	azo2490	-	thioredoxin-disulfide reductase
2490	 69.15	0	2754465..2755391	-	308	119898782	etfA3	azo2491	-	electron transfer flavoprotein subunit alpha
2491	 65.47	0	2755391..2756140	-	249	119898783	etfB3	azo2492	-	electron transfer flavoprotein, beta subunit
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.