IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2332	 74.12	+1	2564464..2565738	+	424	119898624	-	azo2333	-	membrane fusion protein
2333	 69.66	0	2565735..2568839	+	1034	119898625	-	azo2334	-	RND efflux transporter, permease protein
2334	 71.29	0	2568839..2571973	+	1044	119898626	-	azo2335	-	RND efflux transporter, permease protein
2335	 74.86	+1	2572063..2573526	+	487	119898627	opcM1	azo2336	-	putative outer membrane efflux protein
2336	 71.99	+1	2573541..2574254	+	237	119898628	-	azo2337	-	hydrogenase cytochrome b-type subunit
2337	 70.43	0	2574305..2576401	+	698	119898629	prc	azo2338	-	tail-specific penicillin-binding protein protease
2338	 66.45	0	2577133..2577597	-	154	119898630	cycA2	azo2339	-	cytochrome c'
2339	 70.85	0	2577644..2578648	-	334	119898631	-	azo2340	-	dienelactone hydrolase family protein
2340	 70.45	0	2578692..2579669	-	325	119898632	gnl	azo2341	-	putative gluconolactonase precursor
2341	 70.04	0	2579886..2580566	-	226	119898633	cc41	azo2342	-	putative cytochrome c4
2342	 72.02	+1	2580648..2581226	-	192	119898634	bcp3	azo2343	-	bacterioferritin comigratory protein
2343	 62.20	-1	2581238..2581618	-	126	119898635	-	azo2344	-	hypothetical protein
2344	 67.22	0	2581721..2583178	-	485	119898636	-	azo2345	-	hypothetical protein
2345	 66.41	0	2583205..2585517	-	770	119898637	-	azo2346	-	hypothetical protein
2346	 65.55	0	2586159..2588936	+	925	119898638	fyuA	azo2347	-	putative TonB-dependent receptor
2347	 69.17	0	2588979..2589458	-	159	119898639	-	azo2348	-	putative rhodanese sulfurtransferase protein
2348	 70.38	0	2589804..2591366	+	520	119898640	-	azo2349	-	hypothetical protein
2349	 70.75	0	2591415..2591855	-	146	119898641	-	azo2350	-	hypothetical protein
2350	 68.07	0	2592005..2592502	+	165	119898642	arsC1	azo2351	-	putative arsenate reductase (glutaredoxin)
2351	 69.44	0	2592559..2592918	+	119	119898643	arsR	azo2352	-	ArsR family regulatory protein
2352	 69.81	0	2592915..2593328	+	137	119898644	arsC2	azo2353	-	putative arsenate reductase (glutaredoxin)
2353	 66.01	0	2593338..2594402	+	354	119898645	arsB	azo2354	-	putative arsenical-resistance protein
2354	 65.59	0	2594417..2594788	+	123	119898646	arsD	azo2355	-	arsenical resistance operon trans-acting repressor
2355	 72.84	+1	2594802..2596550	+	582	119898647	arsA	azo2356	-	arsenite-transporting ATPase
2356	 72.42	+1	2596593..2598086	-	497	119898648	-	azo2357	-	amidase
2357	 67.68	0	2598201..2599088	-	295	119898649	-	azo2358	-	AraC family transcriptional regulator
2358	 61.94	-1	2599193..2599573	-	126	119898650	-	azo2359	-	oxaloacetate tautomerase
2359	 70.49	0	2599708..2600517	+	269	119898651	-	azo2360	-	LysR family transcriptional regulator
2360	 69.39	0	2600495..2601667	-	390	119898652	-	azo2361	-	putative acetyl esterase
2361	 61.93	-1	2601814..2603754	-	646	119898653	-	azo2362	-	putative sensor kinase/response regulator hybrid protein
2362	 64.99	0	2604007..2605017	-	336	119898654	sbp2	azo2363	-	putative periplasmic sulfate-binding protein
2363	 69.01	0	2605073..2605756	-	227	119898655	-	azo2364	-	hypothetical protein
2364	 65.28	0	2606215..2606502	+	95	119898656	groES2	azo2365	-	chaperonin GroES
2365	 67.40	0	2606556..2608199	+	547	119898657	groEL3	azo2366	-	chaperonin GroEL
2366	 70.90	0	2608274..2609170	-	298	119898658	-	azo2367	-	LysR family transcriptional regulator
2367	 70.98	0	2609291..2610286	+	331	119898659	-	azo2368	-	hypothetical protein
2368	 69.16	0	2610283..2610723	+	146	119898660	-	azo2369	-	hypothetical protein
2369	 64.94	0	2610763..2611167	+	134	119898661	-	azo2370	-	hypothetical protein
2370	 66.38	0	2611545..2611892	-	115	119898662	-	azo2371	-	partiell 30S ribosomal protein S4, truncated
2371	 70.59	0	2611911..2612165	-	84	119898663	-	azo2372	-	hypothetical protein
2372	 66.67	0	2612445..2612945	+	166	119898664	fecI	azo2373	-	RNA polymerase ECF-subfamily sigma-70 factor
2373	 72.95	+1	2612948..2613934	+	328	119898665	fecR	azo2374	-	putative transmembrane sensor
2374	 69.67	0	2614041..2616434	+	797	119898666	fecA	azo2375	-	putative ferric-citrate TonB-dependent receptor
2375	 70.33	0	2616506..2617735	+	409	119898667	-	azo2376	-	hypothetical protein
2376	 72.19	+1	2618005..2618457	-	150	119898668	-	azo2377	-	hypothetical protein
2377	 71.21	0	2618632..2619291	+	219	119898669	-	azo2378	-	hypothetical protein
2378	 68.77	0	2619273..2620175	-	300	119898670	-	azo2379	-	hypothetical protein
2379	 65.58	0	2620360..2621466	+	368	119898671	-	azo2380	-	glycosyltransferase
2380	 70.54	0	2621450..2622997	+	515	119898672	-	azo2381	-	dolichyl-phosphate-mannose-protein mannosyltransferase
2381	 61.72	-1	2623216..2624124	+	302	119898673	-	azo2382	-	hypothetical protein
2382	 66.49	0	2624136..2624690	+	184	119898674	-	azo2383	-	hypothetical protein
2383	 71.86	0	2624734..2625561	+	275	119898675	-	azo2384	-	ApbE family protein
2384	 70.04	0	2625563..2626036	+	157	119898676	-	azo2385	-	hypothetical protein
2385	 74.10	+1	2626263..2626706	+	147	119898677	-	azo2386	-	hypothetical protein
2386	 70.63	0	2626714..2628201	+	495	119898678	-	azo2387	-	hypothetical protein
2387	 68.70	0	2628235..2628873	+	212	119898679	-	azo2388	-	hypothetical protein
2388	 55.09	-2	2628910..2629125	-	71	119898680	ssuF	azo2389	-	molybdenum-pterin binding protein
2389	 69.62	0	2629358..2629729	-	123	119898681	-	azo2390	-	hypothetical protein
2390	 65.01	0	2630041..2631066	+	341	119898682	tauA	azo2391	-	putative sulfonate transport system, periplasmic component
2391	 72.22	+1	2631101..2631892	+	263	119898683	tauB	azo2392	-	putative sulfonate transport system, ATP-binding protein
2392	 70.48	0	2632087..2632899	+	270	119898684	tauC	azo2393	-	putative sulfonate transport system, permease protein
2393	 72.57	+1	2632917..2633645	+	242	119898685	-	azo2394	-	hypothetical protein
2394	 67.64	0	2633703..2635040	+	445	119898686	phaE	azo2395	-	phenylacetate--CoA ligase
2395	 69.46	0	2635527..2637713	+	728	119898687	-	azo2396	-	putative TonB-dependent receptor
2396	 72.24	+1	2637720..2638544	-	274	119898688	-	azo2397	-	putative signaling protein
2397	 71.76	0	2638757..2639365	+	202	119898689	-	azo2398	-	hypothetical protein
2398	 68.81	0	2639458..2640438	+	326	119898690	cysK	azo2399	-	cysteine synthase A
2399	 66.13	0	2640828..2643044	+	738	119898691	-	azo2400	-	putative TonB-dependent receptor protein
2400	 71.40	0	2643054..2643623	+	189	119898692	-	azo2401	-	hypothetical protein
2401	 69.23	0	2643620..2646658	+	1012	119898693	barA	azo2402	-	putative sensor-regulator protein
2402	 67.77	0	2646655..2647560	+	301	119898694	wspR2	azo2403	-	two-component response regulator
2403	 74.37	+1	2647703..2649856	+	717	119898695	-	azo2404	-	hypothetical protein
2404	 68.49	0	2649868..2650305	-	145	119898696	ohr	azo2405	-	organic hydroperoxide resistance protein
2405	 70.18	0	2650430..2654014	-	1194	119898697	-	azo2406	-	2-oxoacid ferredoxin oxidoreductase
2406	 66.46	0	2654233..2654715	+	160	119898698	bkdR	azo2407	-	bkd operon transcriptional regulator
2407	 69.18	0	2654882..2657899	+	1005	119898699	-	azo2408	-	sensor protein
2408	 68.41	0	2657913..2659973	-	686	119898700	-	azo2409	-	putative sodium:solute sympoter
2409	 68.34	0	2660014..2662218	-	734	119898701	-	azo2410	-	DNA polymerase III epsilon chain-like protein
2410	 63.47	-1	2662346..2662720	-	124	119898702	yycF	azo2411	-	transcriptional regulatory protein
2411	 67.36	0	2662752..2665499	-	915	119898703	-	azo2412	-	two-component system sensor protein
2412	 65.66	0	2665499..2665696	-	65	119898704	-	azo2413	-	hypothetical protein
2413	 64.99	0	2665962..2667926	-	654	119898705	acsB	azo2414	-	acetyl-CoA synthetase
2414	 65.13	0	2668208..2669899	+	563	119898706	fumB	azo2415	-	putative fumarate hydratase
2415	 62.89	-1	2669865..2670155	-	96	119898707	-	azo2416	-	hypothetical protein
2416	 70.95	0	2670306..2671496	-	396	119898708	nnrS	azo2417	-	putative heme-Cu-containing membrane protein
2417	 68.77	0	2671716..2672762	+	348	119898709	gapB	azo2418	-	putative D-erythrose 4-phosphate dehydrogenase
2418	 68.54	0	2672763..2673671	-	302	119898710	nahR1	azo2419	-	putative LysR-type transcriptional regulator NahR
2419	 68.98	0	2673841..2674878	+	345	119898711	nagI	azo2420	-	gentisate 1,2-dioxygenase
2420	 66.53	0	2674933..2675643	+	236	119898712	nagK	azo2421	-	fumarylpyruvate hydrolase
2421	 66.75	0	2675686..2676879	+	397	119898713	nahG	azo2422	-	salicylate hydroxylase
2422	 67.91	0	2676985..2677626	+	213	119898714	nagL1	azo2423	-	maleylpyruvate isomerase
2423	 67.27	0	2677699..2678685	+	328	119898715	dctP3	azo2424	-	putative C4-dicarboxylate-binding periplasmic protein
2424	 66.27	0	2679037..2679540	+	167	119898716	dctQ4	azo2425	-	putative TRAP-type C4-dicarboxylate transport system, small permease component
2425	 66.74	0	2679537..2680814	+	425	119898717	dctM4	azo2426	-	putative TRAP-type C4-dicarboxylate transport system, large permease
2426	 73.43	+1	2680831..2681421	-	196	119898718	-	azo2427	-	hypothetical protein
2427	 64.29	0	2681551..2682474	-	307	119898719	-	azo2428	-	hypothetical protein
2428	 62.50	-1	2682655..2682846	-	63	119898720	nahJ	azo2429	-	4-oxalocrotonate tautomerase
2429	 66.54	0	2683055..2683843	-	262	119898721	nahK	azo2430	-	4-oxalocrotonate decarboxylase
2430	 65.61	0	2683840..2684880	-	346	119898722	nahM	azo2431	-	4-hydroxy-2-ketovalerate aldolase
2431	 65.58	0	2684895..2685815	-	306	119898723	nahO	azo2432	-	acetaldehyde dehydrogenase
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.