IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2293	 70.59	0	2513048..2514142	+	364	119898585	-	azo2294	-	carboxypeptidase A
2294	 74.65	+1	2514180..2514956	+	258	119898586	-	azo2295	-	putative hydrolase
2295	 65.82	0	2515151..2515504	+	117	119898587	phhB	azo2296	-	4a-hydroxytetrahydrobiopterin dehydratase
2296	 71.09	0	2515532..2515825	+	97	119898588	-	azo2297	-	hypothetical protein
2297	 72.34	+1	2515850..2516959	+	369	119898589	-	azo2298	-	hypothetical protein
2298	 72.81	+1	2516981..2518624	+	547	119898590	aidB1	azo2299	-	acyl-CoA dehydrogenase
2299	 66.35	0	2519006..2520262	+	418	119898591	-	azo2300	-	hypothetical protein
2300	 68.15	0	2520561..2522381	+	606	119898592	gspE3	azo2301	-	general secretory pathway protein E
2301	 66.42	0	2522542..2523762	+	406	119898593	-	azo2302	-	hypothetical protein
2302	 68.34	0	2523759..2525189	-	476	119898594	-	azo2303	-	hypothetical protein
2303	 59.15	-2	2525577..2526161	-	194	119898595	-	azo2304	-	MerR family transcriptional regulator
2304	 60.67	-1	2526158..2526574	-	138	119898596	-	azo2305	-	hypothetical protein
2305	 62.11	-1	2526840..2527454	+	204	119898597	-	azo2306	-	putative tyrosine recombinase xerD
2306	 60.77	-1	2527848..2531426	+	1192	119898598	-	azo2307	-	hypothetical protein
2307	 59.54	-2	2531423..2537752	+	2109	119898599	-	azo2308	-	putative helicase related protein
2308	 60.73	-1	2537814..2538605	+	263	119898600	-	azo2309	-	hypothetical protein
2309	 66.49	0	2538956..2540617	-	553	119898601	palZ	azo2310	-	putative alpha-D-1,4-glucosidase
2310	 65.04	0	2540718..2541824	+	368	119898602	spr1	azo2311	-	putative glucan 1,3-beta-glucosidase
2311	 68.47	0	2541810..2543588	-	592	119898603	-	azo2312	-	hypothetical protein
2312	 73.06	+1	2543591..2544544	-	317	119898604	glk2	azo2313	-	putative glucokinase
2313	 71.66	0	2544700..2546202	+	500	119898605	-	azo2314	-	glycosyltransferase
2314	 68.09	0	2546172..2546876	+	234	119898606	-	azo2315	-	putative tyrosine/serine phosphatase
2315	 71.59	0	2546873..2548639	+	588	119898607	msbA1	azo2316	-	Lipid A export ATP-binding/permease protein
2316	 74.20	+1	2548636..2549829	+	397	119898608	-	azo2317	-	hypothetical protein
2317	 74.83	+1	2549826..2551112	+	428	119898609	-	azo2318	-	hypothetical protein
2318	 72.44	+1	2551109..2551732	+	207	119898610	-	azo2319	-	glycosyltransferase
2319	 73.37	+1	2551737..2552735	+	332	119898611	-	azo2320	-	hypothetical protein
2320	 74.09	+1	2552955..2554031	+	358	119898612	waaC1	azo2321	-	lipopolysaccharide heptosyltransferase I
2321	 71.95	0	2554028..2555143	+	371	119898613	-	azo2322	-	glycosyltransferase
2322	 73.20	+1	2555172..2556242	+	356	119898614	-	azo2323	-	glycosyltransferase
2323	 70.48	0	2556244..2557083	+	279	119898615	-	azo2324	-	putative polysaccharide deacetylase
2324	 69.75	0	2557095..2557580	+	161	119898616	-	azo2325	-	hypothetical protein
2325	 71.47	0	2557664..2559307	+	547	119898617	-	azo2326	-	putative signaling protein
2326	 70.01	0	2559320..2560276	-	318	119898618	cbl	azo2327	-	transcriptional regulator CysB-like protein
2327	 65.66	0	2560607..2561695	+	362	119898619	pspF	azo2328	-	transcriptional regulator
2328	 71.91	0	2561964..2562611	+	215	119898620	tonB2	azo2329	-	periplasmic biopolymer transport protein linking inner and outer membranes
2329	 69.34	0	2562648..2563469	+	273	119898621	exbB4	azo2330	-	putative biopolymer transport protein ExbB
2330	 66.19	0	2563476..2563895	+	139	119898622	exbD5	azo2331	-	putative biopolymer transport protein ExbD
2331	 67.37	0	2563914..2564342	+	142	119898623	exbD6	azo2332	-	putative biopolymer transport protein ExbD
2332	 74.12	+1	2564464..2565738	+	424	119898624	-	azo2333	-	membrane fusion protein
2333	 69.66	0	2565735..2568839	+	1034	119898625	-	azo2334	-	RND efflux transporter, permease protein
2334	 71.29	0	2568839..2571973	+	1044	119898626	-	azo2335	-	RND efflux transporter, permease protein
2335	 74.86	+1	2572063..2573526	+	487	119898627	opcM1	azo2336	-	putative outer membrane efflux protein
2336	 71.99	+1	2573541..2574254	+	237	119898628	-	azo2337	-	hydrogenase cytochrome b-type subunit
2337	 70.43	0	2574305..2576401	+	698	119898629	prc	azo2338	-	tail-specific penicillin-binding protein protease
2338	 66.45	0	2577133..2577597	-	154	119898630	cycA2	azo2339	-	cytochrome c'
2339	 70.85	0	2577644..2578648	-	334	119898631	-	azo2340	-	dienelactone hydrolase family protein
2340	 70.45	0	2578692..2579669	-	325	119898632	gnl	azo2341	-	putative gluconolactonase precursor
2341	 70.04	0	2579886..2580566	-	226	119898633	cc41	azo2342	-	putative cytochrome c4
2342	 72.02	+1	2580648..2581226	-	192	119898634	bcp3	azo2343	-	bacterioferritin comigratory protein
2343	 62.20	-1	2581238..2581618	-	126	119898635	-	azo2344	-	hypothetical protein
2344	 67.22	0	2581721..2583178	-	485	119898636	-	azo2345	-	hypothetical protein
2345	 66.41	0	2583205..2585517	-	770	119898637	-	azo2346	-	hypothetical protein
2346	 65.55	0	2586159..2588936	+	925	119898638	fyuA	azo2347	-	putative TonB-dependent receptor
2347	 69.17	0	2588979..2589458	-	159	119898639	-	azo2348	-	putative rhodanese sulfurtransferase protein
2348	 70.38	0	2589804..2591366	+	520	119898640	-	azo2349	-	hypothetical protein
2349	 70.75	0	2591415..2591855	-	146	119898641	-	azo2350	-	hypothetical protein
2350	 68.07	0	2592005..2592502	+	165	119898642	arsC1	azo2351	-	putative arsenate reductase (glutaredoxin)
2351	 69.44	0	2592559..2592918	+	119	119898643	arsR	azo2352	-	ArsR family regulatory protein
2352	 69.81	0	2592915..2593328	+	137	119898644	arsC2	azo2353	-	putative arsenate reductase (glutaredoxin)
2353	 66.01	0	2593338..2594402	+	354	119898645	arsB	azo2354	-	putative arsenical-resistance protein
2354	 65.59	0	2594417..2594788	+	123	119898646	arsD	azo2355	-	arsenical resistance operon trans-acting repressor
2355	 72.84	+1	2594802..2596550	+	582	119898647	arsA	azo2356	-	arsenite-transporting ATPase
2356	 72.42	+1	2596593..2598086	-	497	119898648	-	azo2357	-	amidase
2357	 67.68	0	2598201..2599088	-	295	119898649	-	azo2358	-	AraC family transcriptional regulator
2358	 61.94	-1	2599193..2599573	-	126	119898650	-	azo2359	-	oxaloacetate tautomerase
2359	 70.49	0	2599708..2600517	+	269	119898651	-	azo2360	-	LysR family transcriptional regulator
2360	 69.39	0	2600495..2601667	-	390	119898652	-	azo2361	-	putative acetyl esterase
2361	 61.93	-1	2601814..2603754	-	646	119898653	-	azo2362	-	putative sensor kinase/response regulator hybrid protein
2362	 64.99	0	2604007..2605017	-	336	119898654	sbp2	azo2363	-	putative periplasmic sulfate-binding protein
2363	 69.01	0	2605073..2605756	-	227	119898655	-	azo2364	-	hypothetical protein
2364	 65.28	0	2606215..2606502	+	95	119898656	groES2	azo2365	-	chaperonin GroES
2365	 67.40	0	2606556..2608199	+	547	119898657	groEL3	azo2366	-	chaperonin GroEL
2366	 70.90	0	2608274..2609170	-	298	119898658	-	azo2367	-	LysR family transcriptional regulator
2367	 70.98	0	2609291..2610286	+	331	119898659	-	azo2368	-	hypothetical protein
2368	 69.16	0	2610283..2610723	+	146	119898660	-	azo2369	-	hypothetical protein
2369	 64.94	0	2610763..2611167	+	134	119898661	-	azo2370	-	hypothetical protein
2370	 66.38	0	2611545..2611892	-	115	119898662	-	azo2371	-	partiell 30S ribosomal protein S4, truncated
2371	 70.59	0	2611911..2612165	-	84	119898663	-	azo2372	-	hypothetical protein
2372	 66.67	0	2612445..2612945	+	166	119898664	fecI	azo2373	-	RNA polymerase ECF-subfamily sigma-70 factor
2373	 72.95	+1	2612948..2613934	+	328	119898665	fecR	azo2374	-	putative transmembrane sensor
2374	 69.67	0	2614041..2616434	+	797	119898666	fecA	azo2375	-	putative ferric-citrate TonB-dependent receptor
2375	 70.33	0	2616506..2617735	+	409	119898667	-	azo2376	-	hypothetical protein
2376	 72.19	+1	2618005..2618457	-	150	119898668	-	azo2377	-	hypothetical protein
2377	 71.21	0	2618632..2619291	+	219	119898669	-	azo2378	-	hypothetical protein
2378	 68.77	0	2619273..2620175	-	300	119898670	-	azo2379	-	hypothetical protein
2379	 65.58	0	2620360..2621466	+	368	119898671	-	azo2380	-	glycosyltransferase
2380	 70.54	0	2621450..2622997	+	515	119898672	-	azo2381	-	dolichyl-phosphate-mannose-protein mannosyltransferase
2381	 61.72	-1	2623216..2624124	+	302	119898673	-	azo2382	-	hypothetical protein
2382	 66.49	0	2624136..2624690	+	184	119898674	-	azo2383	-	hypothetical protein
2383	 71.86	0	2624734..2625561	+	275	119898675	-	azo2384	-	ApbE family protein
2384	 70.04	0	2625563..2626036	+	157	119898676	-	azo2385	-	hypothetical protein
2385	 74.10	+1	2626263..2626706	+	147	119898677	-	azo2386	-	hypothetical protein
2386	 70.63	0	2626714..2628201	+	495	119898678	-	azo2387	-	hypothetical protein
2387	 68.70	0	2628235..2628873	+	212	119898679	-	azo2388	-	hypothetical protein
2388	 55.09	-2	2628910..2629125	-	71	119898680	ssuF	azo2389	-	molybdenum-pterin binding protein
2389	 69.62	0	2629358..2629729	-	123	119898681	-	azo2390	-	hypothetical protein
2390	 65.01	0	2630041..2631066	+	341	119898682	tauA	azo2391	-	putative sulfonate transport system, periplasmic component
2391	 72.22	+1	2631101..2631892	+	263	119898683	tauB	azo2392	-	putative sulfonate transport system, ATP-binding protein
2392	 70.48	0	2632087..2632899	+	270	119898684	tauC	azo2393	-	putative sulfonate transport system, permease protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.