IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1901	 65.79	0	2086001..2087365	-	454	119898193	-	azo1902	-	membrane-associated zinc metalloprotease
1902	 68.50	0	2087365..2088564	-	399	119898194	dxr	azo1903	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1903	 70.06	0	2088581..2089405	-	274	119898195	cdsA	azo1904	-	putative phosphatidate cytidylyltransferase
1904	 66.79	0	2089398..2090198	-	266	119898196	uppS	azo1905	-	undecaprenyl pyrophosphate synthetase
1905	 61.29	-1	2090246..2090803	-	185	119898197	frr	azo1906	-	Frr protein
1906	 64.99	0	2090814..2091530	-	238	119898198	pyrH	azo1907	-	uridylate kinase
1907	 64.32	0	2091541..2092434	-	297	119898199	tsf	azo1908	-	elongation factor Ts
1908	 63.10	-1	2092546..2093301	-	251	119898200	rpsB	azo1909	-	30S ribosomal protein S2
1909	 64.10	0	2093581..2094399	+	272	119898201	map	azo1910	-	methionine aminopeptidase
1910	 67.05	0	2094419..2097004	+	861	119898202	glnD	azo1911	-	PII uridylyl-transferase
1911	 61.48	-1	2097065..2097700	-	211	119898203	-	azo1912	-	hypothetical protein
1912	 68.22	0	2097850..2099463	+	537	119898204	-	azo1913	-	hypothetical protein
1913	 70.01	0	2099467..2100810	-	447	119898205	dctD2	azo1914	-	transcriptional regulatory protein
1914	 72.66	+1	2100821..2102704	-	627	119898206	dctB2	azo1915	-	sensor histidine kinase
1915	 72.42	+1	2102656..2103072	-	138	119898207	-	azo1916	-	hypothetical protein
1916	 67.89	0	2103072..2105108	-	678	119898208	-	azo1917	-	hypothetical protein
1917	 65.19	0	2105234..2106184	-	316	119898209	-	azo1918	-	hypothetical protein
1918	 71.89	0	2106499..2107608	+	369	119898210	-	azo1919	-	oxidoreductase
1919	 68.18	0	2107621..2109078	-	485	119898211	gabD2	azo1920	-	succinate-semialdehyde dehydrogenase [NAD(P)+]
1920	 69.16	0	2109292..2110215	-	307	119898212	etfA2	azo1921	-	electron transfer flavoprotein subunit alpha
1921	 65.33	0	2110306..2111055	-	249	119898213	etfB2	azo1922	-	electron transfer flavoprotein, beta-subunit
1922	 68.30	0	2111082..2112305	-	407	119898214	-	azo1923	-	hypothetical protein
1923	 65.40	0	2112858..2114045	-	395	119898215	gcdH1	azo1924	-	glutaryl-CoA dehydrogenase
1924	 67.30	0	2114231..2115175	+	314	119898216	-	azo1925	-	LysR family transcriptional regulator
1925	 69.28	0	2115279..2116043	+	254	119898217	-	azo1926	-	hypothetical protein
1926	 69.69	0	2116100..2116894	-	264	119898218	-	azo1927	-	enoyl-CoA hydratase
1927	 63.13	-1	2116903..2117298	-	131	119898219	abmE	azo1928	-	hypothetical protein
1928	 64.91	0	2117291..2117746	-	151	119898220	-	azo1929	-	4-hydroxybenzoyl CoA thioesterase
1929	 65.57	0	2117761..2118942	-	393	119898221	gcdH2	azo1930	-	glutaryl-CoA dehydrogenase
1930	 69.10	0	2118989..2120140	-	383	119898222	abmD	azo1931	-	putative acyl-CoA dehydrogenase
1931	 65.48	0	2120148..2120993	-	281	119898223	abmC	azo1932	-	enoyl-CoA hydratase
1932	 71.36	0	2121433..2122242	-	269	119898224	abmB	azo1933	-	beta-hydroxyacyl-CoA dehydrogenase
1933	 64.90	0	2122523..2124838	-	771	119898225	abmA	azo1934	-	salicylyl-CoA 5-hydroxylase
1934	 66.86	0	2124973..2125479	-	168	119898226	-	azo1935	-	MarR family transcriptional regulator
1935	 68.85	0	2125695..2126702	+	335	119898227	-	azo1936	-	AraC family transcriptional regulator
1936	 70.98	0	2126825..2127613	+	262	119898228	-	azo1937	-	short chain dehydrogenase
1937	 66.44	0	2127668..2128966	+	432	119898229	styA	azo1938	-	putative styrene monooxygenase
1938	 67.49	0	2129059..2129544	+	161	119898230	nmoB	azo1939	-	monooxygenase component B
1939	 68.75	0	2129896..2130807	-	303	119898231	-	azo1940	-	hypothetical protein
1940	 70.64	0	2130993..2132576	-	527	119898232	gdhAlpha2	azo1941	-	putative glucose dehydrogenase alpha subunit
1941	 75.12	+1	2132573..2133175	-	200	119898233	-	azo1942	-	hypothetical protein
1942	 72.45	+1	2133386..2133904	-	172	119898234	hpaC	azo1943	-	HPA reductase
1943	 66.93	0	2133901..2135031	-	376	119898235	-	azo1944	-	hypothetical protein
1944	 67.35	0	2135167..2136183	-	338	119898236	-	azo1945	-	AraC family transcriptional regulator
1945	 67.58	0	2136465..2139191	+	908	119898237	padB	azo1946	-	phenylacetyl-CoA:acceptor oxidoreductase
1946	 65.90	0	2139188..2139835	+	215	119898238	padC	azo1947	-	phenylacetyl-CoA:acceptor oxidoreductase
1947	 73.36	+1	2139832..2140698	+	288	119898239	padD	azo1948	-	phenylacetyl-CoA:acceptor oxidoreductase
1948	 68.91	0	2140807..2141832	-	341	119898240	-	azo1949	-	AraC family transcriptional regulator
1949	 73.79	+1	2142429..2143481	+	350	119898241	-	azo1950	-	hypothetical protein
1950	 65.91	0	2143526..2145898	+	790	119898242	-	azo1951	-	RND superfamily exporter
1951	 63.48	-1	2145954..2147552	+	532	119898243	-	azo1952	-	hypothetical protein
1952	 64.78	0	2147569..2148837	+	422	119898244	-	azo1953	-	hypothetical protein
1953	 70.09	0	2149426..2150184	-	252	119898245	-	azo1954	-	Short-chain dehydrogenase family protein
1954	 71.88	0	2150473..2151930	-	485	119898246	tms	azo1955	-	indole acetimide hydrolase
1955	 74.89	+1	2151974..2153371	-	465	119898247	amiD	azo1956	-	amidase
1956	 68.61	0	2153368..2154240	-	290	119898248	mhpC	azo1957	-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
1957	 65.74	0	2154237..2154995	-	252	119898249	-	azo1958	-	putative Hydantoin racemase
1958	 70.36	0	2155368..2156693	-	441	119898250	-	azo1959	-	hypothetical protein
1959	 69.99	0	2156716..2157738	-	340	119898251	oxoR	azo1960	-	putative 2-oxo-1,2-dihydroquinoline 8-monooxygenase, reductase component
1960	 65.55	0	2157971..2159311	-	446	119898252	oxoO1	azo1961	-	putative 2-oxo-1,2-dihydroquinoline 8-monooxygenase,oxygenase component
1961	 73.68	+1	2159507..2160076	-	189	119898253	-	azo1962	-	flavin reductase
1962	 67.72	0	2160073..2161302	-	409	119898254	-	azo1963	-	hypothetical protein
1963	 68.79	0	2161449..2162435	-	328	119898255	-	azo1964	-	AraC family transcriptional regulator
1964	 66.07	0	2162520..2163521	-	333	119898256	-	azo1965	-	AraC family transcriptional regulator
1965	 67.57	0	2163648..2164532	-	294	119898257	todE	azo1966	-	3-methylcatechol 2,3-dioxygenase
1966	 67.57	0	2164557..2165000	-	147	119898258	-	azo1967	-	hypothetical protein
1967	 67.72	0	2165047..2165901	-	284	119898259	xylF	azo1968	-	2-hydroxy-muconic semialdehyde hydrolase
1968	 71.54	0	2166074..2166811	+	245	119898260	bphS	azo1969	-	GntR family transcriptional regulator
1969	 70.22	0	2166833..2167366	-	177	119898261	-	azo1970	-	hypothetical protein
1970	 69.38	0	2167420..2168526	-	368	119898262	-	azo1971	-	putative alcohol dehydrogenase
1971	 65.89	0	2168585..2169613	-	342	119898263	mhpE	azo1972	-	4-hydroxy-2-ketovalerate aldolase
1972	 65.47	0	2169628..2170548	-	306	119898264	mhpF	azo1973	-	acetaldehyde dehydrogenase
1973	 70.19	0	2170617..2171411	-	264	119898265	mhpD	azo1974	-	MhpD protein
1974	 71.49	0	2171448..2172401	-	317	119898266	mhpB	azo1975	-	3-(2,3-dihydroxyphenyl)propionate dioxygenase
1975	 67.67	0	2172426..2173322	-	298	119898267	ohpC	azo1976	-	2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase
1976	 65.32	0	2173724..2175064	-	446	119898268	oxoO2	azo1977	-	putative 2-oxo-1,2-dihydroquinoline 8-monooxygenase,oxygenase component
1977	 67.05	0	2175414..2176190	+	258	119898269	-	azo1978	-	hypothetical protein
1978	 66.67	0	2176634..2176756	+	40	119898270	-	azo1979	-	hypothetical protein
1979	 66.39	0	2176749..2178953	+	734	119898271	-	azo1980	-	indolepyruvate ferredoxin oxidoreductase, alpha subunit
1980	 70.26	0	2178974..2180560	+	528	119898272	-	azo1981	-	putative indolepyruvate oxidoreductase subunit B
1981	 69.53	0	2180606..2181583	+	325	119898273	vanB2	azo1982	-	vanillate O-demethylase oxidoreductase
1982	 64.55	0	2181600..2182922	+	440	119898274	carBb2	azo1983	-	putative dioxygenase hydroxylase large component
1983	 62.94	-1	2183143..2183625	+	160	119898275	carBa2	azo1984	-	putative dioxygenase, hydroxylase small component
1984	 68.81	0	2183639..2185273	+	544	119898276	-	azo1985	-	putative AMP-binding protein
1985	 68.53	0	2185270..2186448	+	392	119898277	-	azo1986	-	hypothetical protein
1986	 68.81	0	2186445..2187704	+	419	119898278	-	azo1987	-	Short-chain dehydrogenase family protein
1987	 65.65	0	2187853..2188638	+	261	119898279	-	azo1988	-	hypothetical protein
1988	 68.31	0	2188649..2189377	+	242	119898280	-	azo1989	-	Short-chain dehydrogenase family protein
1989	 66.58	0	2189440..2190591	+	383	119898281	braC	azo1990	-	putative Leu/Ile/Val-binding protein
1990	 64.84	0	2190910..2191947	+	345	119898282	-	azo1991	-	ABC transporter permease protein
1991	 67.26	0	2191944..2193803	+	619	119898283	-	azo1992	-	ABC transporter ATP-binding/permease protein
1992	 65.22	0	2193803..2194564	+	253	119898284	-	azo1993	-	ABC transporter ATP-binding protein
1993	 68.15	0	2195039..2196049	+	336	119898285	apbA2	azo1994	-	2-dehydropantoate 2-reductase
1994	 64.08	0	2196116..2196889	+	257	119898286	-	azo1995	-	hypothetical protein
1995	 67.91	0	2197112..2198719	+	535	119898287	acS1	azo1996	-	putative acetyl-coenzyme a synthetase
1996	 64.76	0	2198864..2199388	+	174	119898288	badR	azo1997	-	MarR family transcriptional regulator
1997	 67.21	0	2199402..2200142	-	246	119898289	-	azo1998	-	5'-methylthioadenosine phosphorylase
1998	 65.02	0	2200267..2202084	+	605	119898290	typA	azo1999	-	GTP-binding elongation factor
1999	 64.02	0	2202353..2203258	-	301	119898291	galU	azo2000	-	UTP-glucose-1-phosphate uridylyltransferase
2000	 67.82	0	2203255..2205336	-	693	119898292	-	azo2001	-	DNA ligase (NAD+)
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.