IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1860	 67.00	0	2043439..2044947	-	502	119898152	-	azo1861	-	hypothetical protein
1861	 63.15	-1	2045147..2045857	+	236	119898153	rluA2	azo1862	-	pseudouridine synthase A
1862	 62.12	-1	2046178..2047254	+	358	119898154	-	azo1863	-	phage integrase family site specific recombinase
1863	 58.33	-2	2047997..2048656	+	219	119898155	-	azo1864	-	hypothetical protein
1864	 61.65	-1	2048746..2049024	+	92	119898156	-	azo1865	-	hypothetical protein
1865	 61.28	-1	2049041..2049337	+	98	119898157	-	azo1866	-	hypothetical protein
1866	 62.17	-1	2049341..2049763	+	140	119898158	-	azo1867	-	hypothetical protein
1867	 60.92	-1	2050193..2050453	+	86	119898159	-	azo1868	-	hypothetical protein
1868	 60.04	-1	2050453..2050995	+	180	119898160	-	azo1869	-	hypothetical protein
1869	 63.15	-1	2050956..2052833	+	625	119898161	-	azo1870	-	endopeptidase Clp
1870	 59.43	-2	2052959..2053276	+	105	119898162	-	azo1871	-	hypothetical protein
1871	 61.82	-1	2053263..2055575	+	770	119898163	-	azo1872	-	phage tail tape measure protein
1872	 65.58	0	2055575..2056312	+	245	119898164	-	azo1873	-	hypothetical protein
1873	 59.16	-2	2056922..2057467	-	181	119898165	rmlC	azo1874	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1874	 63.28	-1	2057467..2058351	-	294	119898166	rmlA	azo1875	-	glucose-1-phosphate thymidylyltransferase
1875	 67.79	0	2058363..2059253	-	296	119898167	-	azo1876	-	dTDP-4-dehydrorhamnose reductase
1876	 64.25	0	2059250..2060326	-	358	119898168	rmlB	azo1877	-	dTDP-glucose 4,6-dehydratase
1877	 70.89	0	2060555..2061478	+	307	119898169	-	azo1878	-	hypothetical protein
1878	 69.75	0	2061475..2063547	+	690	119898170	-	azo1879	-	putative signaling protein
1879	 71.34	0	2063554..2064687	-	377	119898171	-	azo1880	-	hypothetical protein
1880	 72.67	+1	2064687..2067200	-	837	119898172	-	azo1881	-	ABC transporter permease protein
1881	 71.98	+1	2067197..2067874	-	225	119898173	-	azo1882	-	ABC transporter, ATP-binding protein
1882	 69.98	0	2067967..2068812	+	281	119898174	crtB1	azo1883	-	putative phytoene synthase
1883	 66.31	0	2068913..2069746	+	277	119898175	crtB2	azo1884	-	putative phytoene synthase
1884	 72.17	+1	2069751..2071058	+	435	119898176	-	azo1885	-	putative oxidoreductase precursor
1885	 68.62	0	2071071..2072195	-	374	119898177	-	azo1886	-	hypothetical protein
1886	 65.78	0	2072225..2073010	-	261	119898178	-	azo1887	-	hypothetical protein
1887	 69.18	0	2073125..2074477	+	450	119898179	bioA	azo1888	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1888	 71.61	0	2074477..2075649	+	390	119898180	bioF	azo1889	-	8-amino-7-oxononanoate synthase
1889	 72.81	+1	2075642..2076406	+	254	119898181	bioH	azo1890	-	BioH protein
1890	 73.33	+1	2076399..2077193	+	264	119898182	bioC1	azo1891	-	biotin synthesis protein
1891	 69.58	0	2077190..2077876	+	228	119898183	bioD	azo1892	-	dethiobiotin synthase
1892	 69.95	0	2077881..2078672	-	263	119898184	-	azo1893	-	RNA methyltransferase
1893	 68.20	0	2078681..2079136	-	151	119898185	-	azo1894	-	hypothetical protein
1894	 71.54	0	2079133..2079747	-	204	119898186	rnhB	azo1895	-	ribonuclease H
1895	 67.43	0	2079720..2080895	-	391	119898187	lpxB	azo1896	-	lipid-A-disaccharide synthase
1896	 66.41	0	2080900..2081670	-	256	119898188	lpxA	azo1897	-	UDP-N-acetylglucosamine acyltransferase
1897	 59.13	-2	2081667..2082104	-	145	119898189	fabZ	azo1898	-	(3R)-hydroxymyristol acyl carrier protein dehydratase
1898	 68.71	0	2082110..2083135	-	341	119898190	lpxD	azo1899	-	UDP-3-O-[3-hydroxymyristol] glucosamine N-acyltransferase
1899	 61.88	-1	2083149..2083649	-	166	119898191	ompH	azo1900	-	outer membrane protein
1900	 63.07	-1	2083683..2085962	-	759	119898192	oma	azo1901	-	outer membrane protein
1901	 65.79	0	2086001..2087365	-	454	119898193	-	azo1902	-	membrane-associated zinc metalloprotease
1902	 68.50	0	2087365..2088564	-	399	119898194	dxr	azo1903	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1903	 70.06	0	2088581..2089405	-	274	119898195	cdsA	azo1904	-	putative phosphatidate cytidylyltransferase
1904	 66.79	0	2089398..2090198	-	266	119898196	uppS	azo1905	-	undecaprenyl pyrophosphate synthetase
1905	 61.29	-1	2090246..2090803	-	185	119898197	frr	azo1906	-	Frr protein
1906	 64.99	0	2090814..2091530	-	238	119898198	pyrH	azo1907	-	uridylate kinase
1907	 64.32	0	2091541..2092434	-	297	119898199	tsf	azo1908	-	elongation factor Ts
1908	 63.10	-1	2092546..2093301	-	251	119898200	rpsB	azo1909	-	30S ribosomal protein S2
1909	 64.10	0	2093581..2094399	+	272	119898201	map	azo1910	-	methionine aminopeptidase
1910	 67.05	0	2094419..2097004	+	861	119898202	glnD	azo1911	-	PII uridylyl-transferase
1911	 61.48	-1	2097065..2097700	-	211	119898203	-	azo1912	-	hypothetical protein
1912	 68.22	0	2097850..2099463	+	537	119898204	-	azo1913	-	hypothetical protein
1913	 70.01	0	2099467..2100810	-	447	119898205	dctD2	azo1914	-	transcriptional regulatory protein
1914	 72.66	+1	2100821..2102704	-	627	119898206	dctB2	azo1915	-	sensor histidine kinase
1915	 72.42	+1	2102656..2103072	-	138	119898207	-	azo1916	-	hypothetical protein
1916	 67.89	0	2103072..2105108	-	678	119898208	-	azo1917	-	hypothetical protein
1917	 65.19	0	2105234..2106184	-	316	119898209	-	azo1918	-	hypothetical protein
1918	 71.89	0	2106499..2107608	+	369	119898210	-	azo1919	-	oxidoreductase
1919	 68.18	0	2107621..2109078	-	485	119898211	gabD2	azo1920	-	succinate-semialdehyde dehydrogenase [NAD(P)+]
1920	 69.16	0	2109292..2110215	-	307	119898212	etfA2	azo1921	-	electron transfer flavoprotein subunit alpha
1921	 65.33	0	2110306..2111055	-	249	119898213	etfB2	azo1922	-	electron transfer flavoprotein, beta-subunit
1922	 68.30	0	2111082..2112305	-	407	119898214	-	azo1923	-	hypothetical protein
1923	 65.40	0	2112858..2114045	-	395	119898215	gcdH1	azo1924	-	glutaryl-CoA dehydrogenase
1924	 67.30	0	2114231..2115175	+	314	119898216	-	azo1925	-	LysR family transcriptional regulator
1925	 69.28	0	2115279..2116043	+	254	119898217	-	azo1926	-	hypothetical protein
1926	 69.69	0	2116100..2116894	-	264	119898218	-	azo1927	-	enoyl-CoA hydratase
1927	 63.13	-1	2116903..2117298	-	131	119898219	abmE	azo1928	-	hypothetical protein
1928	 64.91	0	2117291..2117746	-	151	119898220	-	azo1929	-	4-hydroxybenzoyl CoA thioesterase
1929	 65.57	0	2117761..2118942	-	393	119898221	gcdH2	azo1930	-	glutaryl-CoA dehydrogenase
1930	 69.10	0	2118989..2120140	-	383	119898222	abmD	azo1931	-	putative acyl-CoA dehydrogenase
1931	 65.48	0	2120148..2120993	-	281	119898223	abmC	azo1932	-	enoyl-CoA hydratase
1932	 71.36	0	2121433..2122242	-	269	119898224	abmB	azo1933	-	beta-hydroxyacyl-CoA dehydrogenase
1933	 64.90	0	2122523..2124838	-	771	119898225	abmA	azo1934	-	salicylyl-CoA 5-hydroxylase
1934	 66.86	0	2124973..2125479	-	168	119898226	-	azo1935	-	MarR family transcriptional regulator
1935	 68.85	0	2125695..2126702	+	335	119898227	-	azo1936	-	AraC family transcriptional regulator
1936	 70.98	0	2126825..2127613	+	262	119898228	-	azo1937	-	short chain dehydrogenase
1937	 66.44	0	2127668..2128966	+	432	119898229	styA	azo1938	-	putative styrene monooxygenase
1938	 67.49	0	2129059..2129544	+	161	119898230	nmoB	azo1939	-	monooxygenase component B
1939	 68.75	0	2129896..2130807	-	303	119898231	-	azo1940	-	hypothetical protein
1940	 70.64	0	2130993..2132576	-	527	119898232	gdhAlpha2	azo1941	-	putative glucose dehydrogenase alpha subunit
1941	 75.12	+1	2132573..2133175	-	200	119898233	-	azo1942	-	hypothetical protein
1942	 72.45	+1	2133386..2133904	-	172	119898234	hpaC	azo1943	-	HPA reductase
1943	 66.93	0	2133901..2135031	-	376	119898235	-	azo1944	-	hypothetical protein
1944	 67.35	0	2135167..2136183	-	338	119898236	-	azo1945	-	AraC family transcriptional regulator
1945	 67.58	0	2136465..2139191	+	908	119898237	padB	azo1946	-	phenylacetyl-CoA:acceptor oxidoreductase
1946	 65.90	0	2139188..2139835	+	215	119898238	padC	azo1947	-	phenylacetyl-CoA:acceptor oxidoreductase
1947	 73.36	+1	2139832..2140698	+	288	119898239	padD	azo1948	-	phenylacetyl-CoA:acceptor oxidoreductase
1948	 68.91	0	2140807..2141832	-	341	119898240	-	azo1949	-	AraC family transcriptional regulator
1949	 73.79	+1	2142429..2143481	+	350	119898241	-	azo1950	-	hypothetical protein
1950	 65.91	0	2143526..2145898	+	790	119898242	-	azo1951	-	RND superfamily exporter
1951	 63.48	-1	2145954..2147552	+	532	119898243	-	azo1952	-	hypothetical protein
1952	 64.78	0	2147569..2148837	+	422	119898244	-	azo1953	-	hypothetical protein
1953	 70.09	0	2149426..2150184	-	252	119898245	-	azo1954	-	Short-chain dehydrogenase family protein
1954	 71.88	0	2150473..2151930	-	485	119898246	tms	azo1955	-	indole acetimide hydrolase
1955	 74.89	+1	2151974..2153371	-	465	119898247	amiD	azo1956	-	amidase
1956	 68.61	0	2153368..2154240	-	290	119898248	mhpC	azo1957	-	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
1957	 65.74	0	2154237..2154995	-	252	119898249	-	azo1958	-	putative Hydantoin racemase
1958	 70.36	0	2155368..2156693	-	441	119898250	-	azo1959	-	hypothetical protein
1959	 69.99	0	2156716..2157738	-	340	119898251	oxoR	azo1960	-	putative 2-oxo-1,2-dihydroquinoline 8-monooxygenase, reductase component
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.