IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1399	 58.54	-2	1527783..1528262	+	159	119897691	nuoE	azo1400	-	NADH dehydrogenase subunit E
1400	 61.82	-1	1528259..1529578	+	439	119897692	nuoF	azo1401	-	putative NADH-ubiquinone oxidoreductase chain F
1401	 66.36	0	1529572..1531887	+	771	119897693	nuoG	azo1402	-	NADH dehydrogenase subunit G
1402	 61.71	-1	1531887..1532936	+	349	119897694	nuoH	azo1403	-	putative NADH-ubiquinone oxidoreductase chain H
1403	 61.32	-1	1532947..1533432	+	161	119897695	nuoI	azo1404	-	NADH dehydrogenase subunit I
1404	 61.03	-1	1533469..1534071	+	200	119897696	nuoJ	azo1405	-	NADH-ubiquinone oxidoreductase chain J
1405	 55.88	-2	1534128..1534433	+	101	119897697	nuoK	azo1406	-	NADH dehydrogenase subunit K
1406	 62.27	-1	1534446..1536470	+	674	119897698	nuoL	azo1407	-	NADH-ubiquinone oxidoreductase chain L
1407	 61.40	-1	1536546..1538027	+	493	119897699	nuoM	azo1408	-	NADH dehydrogenase subunit M
1408	 61.86	-1	1538065..1539540	+	491	119897700	nuoN	azo1409	-	NADH dehydrogenase subunit N
1409	 62.68	-1	1539628..1540179	+	183	119897701	-	azo1410	-	ADP-ribose diphosphatase
1410	 66.04	0	1540276..1543152	-	958	119897702	-	azo1411	-	putative ribonucleoside reductase
1411	 69.43	0	1543481..1545289	+	602	119897703	hoxF	azo1412	-	hydrogen dehydrogenase, alpha subunit
1412	 66.24	0	1545286..1545990	+	234	119897704	hoxU	azo1413	-	hydrogen dehydrogenase, gamma subunit
1413	 68.59	0	1545987..1546559	+	190	119897705	hoxY	azo1414	-	hydrogen dehydrogenase, delta subunit
1414	 69.81	0	1546567..1548030	+	487	119897706	hoxH	azo1415	-	hydrogen dehydrogenase, beta subunit
1415	 70.73	0	1548062..1548553	+	163	119897707	-	azo1416	-	hypothetical protein
1416	 69.93	0	1548563..1549420	-	285	119897708	-	azo1417	-	hypothetical protein
1417	 70.64	0	1549449..1550681	-	410	119897709	czcD2	azo1418	-	putative cobalt-zinc-cadmium resistance protein
1418	 71.60	0	1550659..1551510	+	283	119897710	-	azo1419	-	hypothetical protein
1419	 66.04	0	1551523..1552323	-	266	119897711	-	azo1420	-	hypothetical protein
1420	 71.60	0	1552425..1553234	-	269	119897712	-	azo1421	-	carboxylesterase
1421	 70.04	0	1553238..1554542	-	434	119897713	-	azo1422	-	O-acetylhomoserine aminocarboxypropyltransferase
1422	 66.20	0	1554602..1554817	-	71	119897714	-	azo1423	-	hypothetical protein
1423	 65.32	0	1554874..1555542	+	222	119897715	greB	azo1424	-	transcription elongation factor GreB
1424	 63.41	-1	1555626..1557557	+	643	119897716	htpG	azo1425	-	heat shock protein 90
1425	 69.61	0	1557627..1558949	-	440	119897717	yadQ	azo1426	-	putative chloride channel protein
1426	 68.03	0	1559286..1559798	+	170	119897718	mexR	azo1427	-	MarR family transcriptional regulator
1427	 61.35	-1	1560019..1560789	+	256	119897719	-	azo1428	-	flavoprotein
1428	 64.55	0	1560826..1562004	-	392	119897720	-	azo1429	-	hypothetical protein
1429	 72.39	+1	1562015..1563343	-	442	119897721	-	azo1430	-	hypothetical protein
1430	 63.49	-1	1563353..1564201	-	282	119897722	-	azo1431	-	hypothetical protein
1431	 68.83	0	1564276..1564599	+	107	119897723	-	azo1432	-	cytochrome c-type protein
1432	 65.20	0	1564596..1564937	+	113	119897724	-	azo1433	-	cytochrome c-type protein
1433	 67.13	0	1565036..1565467	-	143	119897725	-	azo1434	-	hypothetical protein
1434	 66.98	0	1565496..1566137	-	213	119897726	nth	azo1435	-	DNA-(apurinic or apyrimidinic site) lyase
1435	 66.39	0	1566139..1566852	-	237	119897727	rnfE2	azo1436	-	SoxR-reducing system protein RsxE
1436	 73.04	+1	1566849..1567523	-	224	119897728	rnfG2	azo1437	-	putative electron transport complex protein RnfG
1437	 69.64	0	1567520..1568527	-	335	119897729	rnfD2	azo1438	-	putative electron transport complex protein RnfD
1438	 71.31	0	1568524..1570182	-	552	119897730	rnfC2	azo1439	-	electron transport complex protein RnfC
1439	 67.21	0	1570179..1570730	-	183	119897731	rnfB2	azo1440	-	electron transport complex protein RnfB
1440	 65.13	0	1570739..1571323	-	194	119897732	rnfA2	azo1441	-	electron transport complex promplex protein RnfA
1441	 68.25	0	1571407..1572036	-	209	119897733	-	azo1442	-	putative nuclease
1442	 66.84	0	1572157..1572723	-	188	119897734	-	azo1443	-	NUDIX hydrolase
1443	 69.25	0	1572893..1574863	+	656	119897735	mmoQ	azo1444	-	response regulator
1444	 68.98	0	1574860..1576590	+	576	119897736	-	azo1445	-	EAL/GGDEF domain-containing protein
1445	 64.51	0	1576751..1577074	+	107	119897737	flhD	azo1446	-	flagellar transcriptional activator FlhD
1446	 64.86	0	1577079..1577633	+	184	119897738	flhC	azo1447	-	transcriptional activator FlhC
1447	 63.27	-1	1577773..1578627	+	284	119897739	motA2	azo1448	-	flagellar motor protein MotA
1448	 68.53	0	1578688..1579761	+	357	119897740	motB2	azo1449	-	flagellar motor protein MotB
1449	 70.50	0	1579813..1580229	+	138	119897741	cheY2	azo1450	-	putative chemotaxis response regulator
1450	 71.74	0	1580242..1582332	+	696	119897742	cheA2	azo1451	-	chemotaxis protein cheA
1451	 71.76	0	1582399..1582908	+	169	119897743	cheW2	azo1452	-	positive regulator of CheA protein activity
1452	 71.68	0	1582905..1584779	+	624	119897744	tsr	azo1453	-	putative serine chemoreceptor protein
1453	 70.15	0	1584776..1587298	+	840	119897745	tcp	azo1454	-	putative citrate chemoreceptor protein
1454	 69.18	0	1587301..1588254	+	317	119897746	cheR2	azo1455	-	chemotaxis protein methyltransferase
1455	 72.82	+1	1588263..1589384	+	373	119897747	cheB2	azo1456	-	protein glutamate-methylesterase
1456	 68.34	0	1589532..1591208	+	558	119897748	-	azo1457	-	methyl accepting chemotaxis protein
1457	 64.49	0	1591411..1592376	+	321	119897749	cheV1	azo1458	-	chemotaxis protein CheV-like
1458	 63.22	-1	1592386..1593342	+	318	119897750	cheV2	azo1459	-	chemotaxis protein CheV-like
1459	 62.19	-1	1593373..1593774	+	133	119897751	cheY3	azo1460	-	chemotaxis response regulator
1460	 67.67	0	1593809..1594702	+	297	119897752	cheZ	azo1461	-	chemotaxis regulator CheZ
1461	 67.83	0	1594779..1596674	+	631	119897753	cheA3	azo1462	-	chemotaxis protein cheA
1462	 65.06	0	1596794..1597105	+	103	119897754	-	azo1463	-	hypothetical protein
1463	 68.46	0	1597121..1598236	-	371	119897755	tal	azo1464	-	transaldolase
1464	 68.71	0	1598208..1598990	-	260	119897756	-	azo1465	-	hypothetical protein
1465	 62.22	-1	1599073..1599657	-	194	119897757	-	azo1466	-	putative superoxide dismutase
1466	 70.87	0	1599814..1601193	-	459	119897758	xseA	azo1467	-	exodeoxyribonuclease VII
1467	 66.67	0	1601484..1602092	+	202	119897759	exbB3	azo1468	-	biopolymer transport protein ExbB
1468	 66.19	0	1602104..1602526	+	140	119897760	exbD4	azo1469	-	putative biopolymer transport protein ExbD
1469	 73.29	+1	1602530..1603555	+	341	119897761	lpxK	azo1470	-	tetraacyldisaccharide 4'-kinase
1470	 66.14	0	1603536..1603724	+	62	119897762	ycaR	azo1471	-	hypothetical protein
1471	 72.09	+1	1603733..1604506	+	257	119897763	kdsB	azo1472	-	3-deoxy-manno-octulosonate cytidylyltransferase
1472	 65.90	0	1604626..1605279	+	217	119897764	adk	azo1473	-	adenylate kinase
1473	 70.93	0	1605395..1606660	+	421	119897765	pfkA	azo1474	-	6-phosphofructokinase
1474	 74.62	+1	1606678..1608399	+	573	119897766	ggt	azo1475	-	Ggt protein
1475	 66.86	0	1608393..1610963	-	856	119897767	-	azo1476	-	hypothetical protein
1476	 69.93	0	1611123..1611704	-	193	119897768	drgA	azo1477	-	NAD(P)H quinone oxidoreductase
1477	 75.89	+1	1611764..1612186	-	140	119897769	-	azo1478	-	MerR family transcriptional regulator
1478	 68.09	0	1612279..1613682	+	467	119897770	gltX	azo1479	-	glutamyl-tRNA synthetase
1479	 66.67	0	1613749..1614060	-	103	119897771	-	azo1480	-	nitrogen regulatory protein P-II
1480	 69.33	0	1614063..1615001	-	312	119897772	-	azo1481	-	hypothetical protein
1481	 74.53	+1	1615045..1616952	-	635	119897773	mnmC	azo1482	-	5-methylaminomethyl-2-thiouridine methyltransferase
1482	 69.02	0	1617116..1619113	-	665	119897774	-	azo1483	-	5'-nucleotidase
1483	 71.54	0	1619180..1622011	-	943	119897775	nucH	azo1484	-	putative extracellular nuclease
1484	 66.96	0	1622218..1622907	+	229	119897776	-	azo1485	-	hypothetical protein
1485	 68.25	0	1622923..1624122	-	399	119897777	-	azo1486	-	putative signaling protein
1486	 64.60	0	1624335..1625837	-	500	119897778	lysS	azo1487	-	lysyl-tRNA synthetase
1487	 69.05	0	1625995..1626372	+	125	119897779	-	azo1488	-	hypothetical protein
1488	 69.94	0	1626384..1626902	-	172	119897780	-	azo1489	-	hypothetical protein
1489	 69.17	0	1627018..1630287	-	1089	119897781	-	azo1490	-	putative signaling protein
1490	 68.18	0	1630292..1630687	-	131	119897782	divK	azo1491	-	polar differentiation response regulator
1491	 66.99	0	1630684..1632525	-	613	119897783	divJ	azo1492	-	putative histidine protein kinase
1492	 70.64	0	1632830..1634692	-	620	119897784	-	azo1493	-	hypothetical protein
1493	 70.71	0	1634819..1637611	-	930	119897785	-	azo1494	-	hypothetical protein
1494	 69.38	0	1637617..1638315	-	232	119897786	-	azo1495	-	hypothetical protein
1495	 72.53	+1	1638326..1639639	-	437	119897787	-	azo1496	-	hypothetical protein
1496	 63.99	0	1639694..1640815	-	373	119897788	prfB	azo1497	-	peptide chain release factor
1497	 66.19	0	1640905..1641321	+	138	119897789	-	azo1498	-	hypothetical protein
1498	 70.16	0	1641332..1641760	-	142	119897790	-	azo1499	-	HIT family protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.