IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1332	 69.15	0	1451135..1452220	-	361	119897624	cysA	azo1333	-	putative sulfate transport ATP-binding protein
1333	 65.54	0	1452232..1453119	-	295	119897625	cysW	azo1334	-	putative sulfate transport system permease protein
1334	 66.32	0	1453119..1453973	-	284	119897626	cysT	azo1335	-	sulfate transporter permease
1335	 65.68	0	1453973..1454983	-	336	119897627	cysP	azo1336	-	putative sulfate transport system substrate-binding protein
1336	 71.28	0	1455298..1456512	+	404	119897628	-	azo1337	-	peptidoglycan-binding protein
1337	 67.71	0	1456606..1457373	+	255	119897629	-	azo1338	-	Short-chain dehydrogenase family protein
1338	 67.11	0	1457532..1460015	+	827	119897630	ccoI	azo1339	-	putative cation-transporting ATPase
1339	 63.33	-1	1460020..1460229	+	69	119897631	ccoS	azo1340	-	cytochrome oxidase maturation protein
1340	 60.14	-1	1460596..1462020	+	474	119897632	ccoN	azo1341	-	cytochrome c oxidase, cbb3-type,subunit I
1341	 60.38	-1	1462036..1462671	+	211	119897633	ccoO	azo1342	-	cytochrome c oxidase, cbb3-type,subunit II
1342	 55.17	-2	1462691..1462864	+	57	119897634	ccoQ	azo1343	-	Cbb3-type cytochrome oxidase, subuni
1343	 60.63	-1	1462868..1463761	+	297	119897635	ccoP	azo1344	-	cytochrome c oxidase, cbb3-type,subunit III
1344	 57.33	-2	1463836..1465260	+	474	119897636	ccoG	azo1345	-	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
1345	 58.72	-2	1465265..1465780	+	171	119897637	ccoH	azo1346	-	hypothetical protein
1346	 53.33	-2	1465806..1465955	+	49	119897638	-	azo1347	-	hypothetical protein
1347	 53.59	-2	1465986..1466222	+	78	119897639	-	azo1348	-	transmemebrane protein
1348	 60.36	-1	1466484..1466927	-	147	119897640	-	azo1349	-	putative universal stress protein f
1349	 61.53	-1	1467151..1468884	+	577	119897641	phbC2	azo1350	-	poly-beta-hydroxybutyrate synthase
1350	 60.17	-1	1468907..1469707	-	266	119897642	fnr	azo1351	-	fumarate and nitrate reduction regulatory protein
1351	 60.63	-1	1469756..1471147	+	463	119897643	hemN	azo1352	-	coproporphyrinogen III oxidase
1352	 65.69	0	1471235..1471951	+	238	119897644	-	azo1353	-	hypothetical protein
1353	 64.39	0	1471968..1472363	-	131	119897645	copY	azo1354	-	putative regulatory protein
1354	 69.54	0	1472442..1474877	+	811	119897646	copA	azo1355	-	putative Cu2+ transporting ATPase
1355	 66.19	0	1474902..1475111	+	69	119897647	copZ	azo1356	-	copper chaperon
1356	 67.16	0	1475126..1477969	-	947	119897648	-	azo1357	-	EAL/GGDEF/PAS/PAC-domain-containing signalling protein
1357	 61.74	-1	1478241..1478768	+	175	119897649	ppa	azo1358	-	inorganic pyrophosphatase
1358	 66.31	0	1478841..1479977	-	378	119897650	-	azo1359	-	hypothetical protein
1359	 65.37	0	1480139..1481755	+	538	119897651	nadE	azo1360	-	NAD synthetase
1360	 60.47	-1	1481805..1482143	+	112	119897652	glnB	azo1361	-	PII-like signal transmitter protein GlnB
1361	 71.60	0	1482173..1483225	-	350	119897653	-	azo1362	-	hypothetical protein
1362	 65.40	0	1483241..1484191	-	316	119897654	trxB2	azo1363	-	thioredoxin-disulfide reductase
1363	 62.65	-1	1484423..1485094	+	223	119897655	vfr	azo1364	-	cyclic AMP receptor protein
1364	 66.10	0	1485243..1487531	+	762	119897656	FtsK	azo1365	-	putative cell division protein
1365	 68.29	0	1487528..1488205	+	225	119897657	lolA	azo1366	-	putative outer membrane lipoprotein carrier protein
1366	 67.94	0	1488217..1489554	+	445	119897658	-	azo1367	-	recombination factor protein RarA
1367	 59.47	-2	1489593..1489856	-	87	119897659	-	azo1368	-	hypothetical protein
1368	 65.89	0	1490125..1491417	+	430	119897660	-	azo1369	-	SerS protein
1369	 69.57	0	1491592..1493208	+	538	119897661	-	azo1370	-	putative aerotaxis receptor protein
1370	 66.89	0	1493285..1495105	-	606	119897662	lpdA	azo1371	-	dihydrolipoamide dehydrogenase
1371	 66.43	0	1495116..1496804	-	562	119897663	pdhB	azo1372	-	dihydrolipoamide acetyltransferase
1372	 65.62	0	1496825..1499506	-	893	119897664	aceE	azo1373	-	pyruvate dehydrogenase subunit E1
1373	 67.99	0	1499913..1501118	-	401	119897665	-	azo1374	-	extracellular ligand binding protein
1374	 66.59	0	1501285..1503999	+	904	119897666	-	azo1375	-	putative two-component sensor kinase
1375	 65.26	0	1503974..1504612	+	212	119897667	fixJ2	azo1376	-	transcriptional regulatory protein
1376	 66.89	0	1504697..1505572	+	291	119897668	folD	azo1377	-	methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase
1377	 69.59	0	1505580..1506092	+	170	119897669	purE	azo1378	-	phosphoribosylaminoimidazole carboxylase
1378	 68.61	0	1506220..1507401	+	393	119897670	purK	azo1379	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
1379	 70.25	0	1507398..1508429	+	343	119897671	-	azo1380	-	hypothetical protein
1380	 65.53	0	1508792..1509934	+	380	119897672	carA	azo1381	-	carbamoyl phosphate synthase small subunit
1381	 64.28	0	1509989..1513216	+	1075	119897673	carB	azo1382	-	carbamoyl phosphate synthase large subunit
1382	 62.47	-1	1513213..1513689	+	158	119897674	greA	azo1383	-	putative transcription elongation factor
1383	 66.24	0	1513701..1514171	+	156	119897675	-	azo1384	-	hypothetical protein
1384	 68.40	0	1514202..1514663	-	153	119897676	-	azo1385	-	hypothetical protein
1385	 62.62	-1	1514707..1515324	+	205	119897677	FtsJ	azo1386	-	ribosomal RNA large subunit methyltransferase j
1386	 62.76	-1	1515440..1517332	+	630	119897678	FtsH	azo1387	-	cell division protein FtsH
1387	 64.48	0	1517394..1518215	+	273	119897679	folP	azo1388	-	dihydropteroate synthase
1388	 64.60	0	1518249..1519604	+	451	119897680	glmM	azo1389	-	putative phosphoglucomutase
1389	 62.54	-1	1519717..1520757	+	346	119897681	pstS2	azo1390	-	phosphate-binding periplasmic protein
1390	 61.79	-1	1520867..1521829	+	320	119897682	pstC	azo1391	-	phosphate transporter permease subunit
1391	 63.08	-1	1521902..1522681	+	259	119897683	-	azo1392	-	phosphate ABC transporter permease
1392	 58.17	-2	1522714..1523478	+	254	119897684	pstB	azo1393	-	phosphate ABC transporter ATP-binding protein
1393	 65.71	0	1523592..1524320	+	242	119897685	tim	azo1394	-	putative triosephosphate isomerase
1394	 63.91	0	1524363..1524725	+	120	119897686	secG	azo1395	-	preprotein translocase subunit SecG
1395	 51.73	-2	1524978..1525352	+	124	119897687	nuoA	azo1396	-	putative NADH-ubiquinone oxidoreductase chain A
1396	 59.12	-2	1525357..1525833	+	158	119897688	nuoB2	azo1397	-	NADH dehydrogenase subunit B
1397	 57.59	-2	1525851..1526456	+	201	119897689	nuoC	azo1398	-	NADH dehydrogenase subunit C
1398	 60.45	-1	1526449..1527702	+	417	119897690	nuoD	azo1399	-	NADH dehydrogenase subunit D
1399	 58.54	-2	1527783..1528262	+	159	119897691	nuoE	azo1400	-	NADH dehydrogenase subunit E
1400	 61.82	-1	1528259..1529578	+	439	119897692	nuoF	azo1401	-	putative NADH-ubiquinone oxidoreductase chain F
1401	 66.36	0	1529572..1531887	+	771	119897693	nuoG	azo1402	-	NADH dehydrogenase subunit G
1402	 61.71	-1	1531887..1532936	+	349	119897694	nuoH	azo1403	-	putative NADH-ubiquinone oxidoreductase chain H
1403	 61.32	-1	1532947..1533432	+	161	119897695	nuoI	azo1404	-	NADH dehydrogenase subunit I
1404	 61.03	-1	1533469..1534071	+	200	119897696	nuoJ	azo1405	-	NADH-ubiquinone oxidoreductase chain J
1405	 55.88	-2	1534128..1534433	+	101	119897697	nuoK	azo1406	-	NADH dehydrogenase subunit K
1406	 62.27	-1	1534446..1536470	+	674	119897698	nuoL	azo1407	-	NADH-ubiquinone oxidoreductase chain L
1407	 61.40	-1	1536546..1538027	+	493	119897699	nuoM	azo1408	-	NADH dehydrogenase subunit M
1408	 61.86	-1	1538065..1539540	+	491	119897700	nuoN	azo1409	-	NADH dehydrogenase subunit N
1409	 62.68	-1	1539628..1540179	+	183	119897701	-	azo1410	-	ADP-ribose diphosphatase
1410	 66.04	0	1540276..1543152	-	958	119897702	-	azo1411	-	putative ribonucleoside reductase
1411	 69.43	0	1543481..1545289	+	602	119897703	hoxF	azo1412	-	hydrogen dehydrogenase, alpha subunit
1412	 66.24	0	1545286..1545990	+	234	119897704	hoxU	azo1413	-	hydrogen dehydrogenase, gamma subunit
1413	 68.59	0	1545987..1546559	+	190	119897705	hoxY	azo1414	-	hydrogen dehydrogenase, delta subunit
1414	 69.81	0	1546567..1548030	+	487	119897706	hoxH	azo1415	-	hydrogen dehydrogenase, beta subunit
1415	 70.73	0	1548062..1548553	+	163	119897707	-	azo1416	-	hypothetical protein
1416	 69.93	0	1548563..1549420	-	285	119897708	-	azo1417	-	hypothetical protein
1417	 70.64	0	1549449..1550681	-	410	119897709	czcD2	azo1418	-	putative cobalt-zinc-cadmium resistance protein
1418	 71.60	0	1550659..1551510	+	283	119897710	-	azo1419	-	hypothetical protein
1419	 66.04	0	1551523..1552323	-	266	119897711	-	azo1420	-	hypothetical protein
1420	 71.60	0	1552425..1553234	-	269	119897712	-	azo1421	-	carboxylesterase
1421	 70.04	0	1553238..1554542	-	434	119897713	-	azo1422	-	O-acetylhomoserine aminocarboxypropyltransferase
1422	 66.20	0	1554602..1554817	-	71	119897714	-	azo1423	-	hypothetical protein
1423	 65.32	0	1554874..1555542	+	222	119897715	greB	azo1424	-	transcription elongation factor GreB
1424	 63.41	-1	1555626..1557557	+	643	119897716	htpG	azo1425	-	heat shock protein 90
1425	 69.61	0	1557627..1558949	-	440	119897717	yadQ	azo1426	-	putative chloride channel protein
1426	 68.03	0	1559286..1559798	+	170	119897718	mexR	azo1427	-	MarR family transcriptional regulator
1427	 61.35	-1	1560019..1560789	+	256	119897719	-	azo1428	-	flavoprotein
1428	 64.55	0	1560826..1562004	-	392	119897720	-	azo1429	-	hypothetical protein
1429	 72.39	+1	1562015..1563343	-	442	119897721	-	azo1430	-	hypothetical protein
1430	 63.49	-1	1563353..1564201	-	282	119897722	-	azo1431	-	hypothetical protein
1431	 68.83	0	1564276..1564599	+	107	119897723	-	azo1432	-	cytochrome c-type protein
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.