IslandPathversion 1.0

IslandPath Analysis: Azoarcus sp. BH72



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.83 STD DEV: 4.13
Azoarcus sp. BH72, complete genome - 1..4376040
3989 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1279	 63.96	0	1379865..1380641	-	258	119897571	fpr1	azo1280	-	ferredoxin-NADP+ reductase
1280	 68.28	0	1380741..1381667	+	308	119897572	-	azo1281	-	LysR family transcriptional regulator
1281	 65.86	0	1381825..1384443	-	872	119897573	ndvB	azo1282	-	putative Beta-(1-3)-glucosyl transferase
1282	 69.21	0	1384729..1385121	+	130	119897574	-	azo1283	-	hypothetical protein
1283	 70.05	0	1385065..1386660	-	531	119897575	ndvC	azo1284	-	putative glucan 1,3-beta-glucosidase
1284	 67.05	0	1386740..1389619	-	959	119897576	gcvP	azo1285	-	glycine dehydrogenase
1285	 66.41	0	1389681..1390064	-	127	119897577	gcvH	azo1286	-	glycine cleavage system protein H
1286	 66.77	0	1390115..1391122	-	335	119897578	gcvT	azo1287	-	glycine cleavage system aminomethyltransferase T
1287	 60.00	-1	1397768..1398982	+	404	119897579	narK	azo1288	-	putative nitrate transporter
1288	 65.54	0	1399088..1400770	+	560	119897580	-	azo1289	-	putative serine/threonine protein kinase
1289	 63.77	0	1400786..1401718	-	310	119897581	-	azo1290	-	hypothetical protein
1290	 71.30	0	1401860..1402312	-	150	119897582	sixA	azo1291	-	putative phosphohistidine phosphatase
1291	 69.28	0	1402375..1403868	-	497	119897583	-	azo1292	-	adenylate cyclase
1292	 68.34	0	1403946..1406627	-	893	119897584	glnE	azo1293	-	[glutamate-ammonia-ligase] adenylyltransferase
1293	 70.54	0	1406776..1410699	+	1307	119897585	-	azo1294	-	hypothetical protein
1294	 69.11	0	1410696..1411553	+	285	119897586	-	azo1295	-	carbon-nitrogen hydrolase
1295	 66.53	0	1411624..1413069	+	481	119897587	tldD	azo1296	-	TldD protein
1296	 69.82	0	1413077..1413520	-	147	119897588	-	azo1297	-	hypothetical protein
1297	 66.09	0	1413533..1414231	-	232	119897589	-	azo1298	-	hypothetical protein
1298	 64.44	0	1414245..1415591	-	448	119897590	-	azo1299	-	hypothetical protein
1299	 64.55	0	1415603..1416217	-	204	119897591	-	azo1300	-	hypothetical protein
1300	 68.90	0	1416388..1417059	+	223	119897592	-	azo1301	-	hypothetical protein
1301	 68.78	0	1417056..1420748	+	1230	119897593	-	azo1302	-	hypothetical protein
1302	 65.71	0	1420836..1421360	+	174	119897594	-	azo1303	-	hypothetical protein
1303	 64.79	0	1421344..1422837	+	497	119897595	-	azo1304	-	hypothetical protein
1304	 63.45	-1	1422881..1423378	+	165	119897596	-	azo1305	-	hypothetical protein
1305	 71.91	0	1423378..1423854	+	158	119897597	-	azo1306	-	hypothetical protein
1306	 69.57	0	1423911..1426628	+	905	119897598	-	azo1307	-	Vgr related protein
1307	 66.61	0	1426635..1428473	+	612	119897599	-	azo1308	-	hypothetical protein
1308	 69.62	0	1428437..1429453	+	338	119897600	-	azo1309	-	hypothetical protein
1309	 70.52	0	1429450..1430565	-	371	119897601	-	azo1310	-	hypothetical protein
1310	 68.94	0	1430572..1430835	-	87	119897602	-	azo1311	-	hypothetical protein
1311	 66.58	0	1431039..1432133	+	364	119897603	-	azo1312	-	tRNA (uracil-5-)-methyltransferase
1312	 61.95	-1	1432168..1432506	+	112	119897604	phnA	azo1313	-	putative phosphonoacetate hydrolase protein
1313	 67.20	0	1432522..1432893	-	123	119897605	-	azo1314	-	hypothetical protein
1314	 67.54	0	1432952..1433749	-	265	119897606	-	azo1315	-	hypothetical protein
1315	 70.63	0	1433746..1434351	-	201	119897607	-	azo1316	-	putative ATP binding protein
1316	 65.21	0	1434635..1435387	+	250	119897608	-	azo1317	-	hypothetical protein
1317	 69.07	0	1435529..1436443	-	304	119897609	-	azo1318	-	hypothetical protein
1318	 69.82	0	1436614..1437468	-	284	119897610	-	azo1319	-	putative methyltransferase
1319	 71.54	0	1437635..1438639	+	334	119897611	-	azo1320	-	AraC family transcriptional regulator
1320	 56.08	-2	1438850..1439548	+	232	119897612	-	azo1321	-	hypothetical protein
1321	 55.56	-2	1439761..1440165	+	134	119897613	-	azo1322	-	hypothetical protein
1322	 50.81	-2	1440382..1441617	+	411	119897614	-	azo1323	-	protein kinase
1323	 61.87	-1	1441791..1442165	-	124	119897615	-	azo1324	-	GTP binding protein
1324	 59.02	-2	1442281..1443378	-	365	119897616	-	azo1325	-	hypothetical protein
1325	 55.21	-2	1443478..1443669	+	63	119897617	-	azo1326	-	hypothetical protein
1326	 66.81	0	1443843..1445237	-	464	119897618	hflX2	azo1327	-	GTP-binding protein HflX
1327	 69.83	0	1445591..1446979	+	462	119897619	-	azo1328	-	hypothetical protein
1328	 71.81	0	1446976..1448064	-	362	119897620	aapM	azo1329	-	putative amino acid permease
1329	 71.37	0	1448061..1449080	-	339	119897621	aapQ	azo1330	-	putative amino acid permease
1330	 69.37	0	1449038..1450072	-	344	119897622	aapJ	azo1331	-	putative amino acid-binding protein
1331	 66.03	0	1450197..1451132	-	311	119897623	cbl	azo1332	-	transcriptional regulator CysB-like protein
1332	 69.15	0	1451135..1452220	-	361	119897624	cysA	azo1333	-	putative sulfate transport ATP-binding protein
1333	 65.54	0	1452232..1453119	-	295	119897625	cysW	azo1334	-	putative sulfate transport system permease protein
1334	 66.32	0	1453119..1453973	-	284	119897626	cysT	azo1335	-	sulfate transporter permease
1335	 65.68	0	1453973..1454983	-	336	119897627	cysP	azo1336	-	putative sulfate transport system substrate-binding protein
1336	 71.28	0	1455298..1456512	+	404	119897628	-	azo1337	-	peptidoglycan-binding protein
1337	 67.71	0	1456606..1457373	+	255	119897629	-	azo1338	-	Short-chain dehydrogenase family protein
1338	 67.11	0	1457532..1460015	+	827	119897630	ccoI	azo1339	-	putative cation-transporting ATPase
1339	 63.33	-1	1460020..1460229	+	69	119897631	ccoS	azo1340	-	cytochrome oxidase maturation protein
1340	 60.14	-1	1460596..1462020	+	474	119897632	ccoN	azo1341	-	cytochrome c oxidase, cbb3-type,subunit I
1341	 60.38	-1	1462036..1462671	+	211	119897633	ccoO	azo1342	-	cytochrome c oxidase, cbb3-type,subunit II
1342	 55.17	-2	1462691..1462864	+	57	119897634	ccoQ	azo1343	-	Cbb3-type cytochrome oxidase, subuni
1343	 60.63	-1	1462868..1463761	+	297	119897635	ccoP	azo1344	-	cytochrome c oxidase, cbb3-type,subunit III
1344	 57.33	-2	1463836..1465260	+	474	119897636	ccoG	azo1345	-	putative iron-sulfur 4Fe-4S ferredoxin transmembrane protein
1345	 58.72	-2	1465265..1465780	+	171	119897637	ccoH	azo1346	-	hypothetical protein
1346	 53.33	-2	1465806..1465955	+	49	119897638	-	azo1347	-	hypothetical protein
1347	 53.59	-2	1465986..1466222	+	78	119897639	-	azo1348	-	transmemebrane protein
1348	 60.36	-1	1466484..1466927	-	147	119897640	-	azo1349	-	putative universal stress protein f
1349	 61.53	-1	1467151..1468884	+	577	119897641	phbC2	azo1350	-	poly-beta-hydroxybutyrate synthase
1350	 60.17	-1	1468907..1469707	-	266	119897642	fnr	azo1351	-	fumarate and nitrate reduction regulatory protein
1351	 60.63	-1	1469756..1471147	+	463	119897643	hemN	azo1352	-	coproporphyrinogen III oxidase
1352	 65.69	0	1471235..1471951	+	238	119897644	-	azo1353	-	hypothetical protein
1353	 64.39	0	1471968..1472363	-	131	119897645	copY	azo1354	-	putative regulatory protein
1354	 69.54	0	1472442..1474877	+	811	119897646	copA	azo1355	-	putative Cu2+ transporting ATPase
1355	 66.19	0	1474902..1475111	+	69	119897647	copZ	azo1356	-	copper chaperon
1356	 67.16	0	1475126..1477969	-	947	119897648	-	azo1357	-	EAL/GGDEF/PAS/PAC-domain-containing signalling protein
1357	 61.74	-1	1478241..1478768	+	175	119897649	ppa	azo1358	-	inorganic pyrophosphatase
1358	 66.31	0	1478841..1479977	-	378	119897650	-	azo1359	-	hypothetical protein
1359	 65.37	0	1480139..1481755	+	538	119897651	nadE	azo1360	-	NAD synthetase
1360	 60.47	-1	1481805..1482143	+	112	119897652	glnB	azo1361	-	PII-like signal transmitter protein GlnB
1361	 71.60	0	1482173..1483225	-	350	119897653	-	azo1362	-	hypothetical protein
1362	 65.40	0	1483241..1484191	-	316	119897654	trxB2	azo1363	-	thioredoxin-disulfide reductase
1363	 62.65	-1	1484423..1485094	+	223	119897655	vfr	azo1364	-	cyclic AMP receptor protein
1364	 66.10	0	1485243..1487531	+	762	119897656	FtsK	azo1365	-	putative cell division protein
1365	 68.29	0	1487528..1488205	+	225	119897657	lolA	azo1366	-	putative outer membrane lipoprotein carrier protein
1366	 67.94	0	1488217..1489554	+	445	119897658	-	azo1367	-	recombination factor protein RarA
1367	 59.47	-2	1489593..1489856	-	87	119897659	-	azo1368	-	hypothetical protein
1368	 65.89	0	1490125..1491417	+	430	119897660	-	azo1369	-	SerS protein
1369	 69.57	0	1491592..1493208	+	538	119897661	-	azo1370	-	putative aerotaxis receptor protein
1370	 66.89	0	1493285..1495105	-	606	119897662	lpdA	azo1371	-	dihydrolipoamide dehydrogenase
1371	 66.43	0	1495116..1496804	-	562	119897663	pdhB	azo1372	-	dihydrolipoamide acetyltransferase
1372	 65.62	0	1496825..1499506	-	893	119897664	aceE	azo1373	-	pyruvate dehydrogenase subunit E1
1373	 67.99	0	1499913..1501118	-	401	119897665	-	azo1374	-	extracellular ligand binding protein
1374	 66.59	0	1501285..1503999	+	904	119897666	-	azo1375	-	putative two-component sensor kinase
1375	 65.26	0	1503974..1504612	+	212	119897667	fixJ2	azo1376	-	transcriptional regulatory protein
1376	 66.89	0	1504697..1505572	+	291	119897668	folD	azo1377	-	methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase
1377	 69.59	0	1505580..1506092	+	170	119897669	purE	azo1378	-	phosphoribosylaminoimidazole carboxylase
1378	 68.61	0	1506220..1507401	+	393	119897670	purK	azo1379	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
67.83	MEAN

4.13	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.