IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
941	 26.49	0	973923..974492	-	189	157737212	tmk	Abu_0966	-	thymidylate kinase
942	 27.68	0	974483..974977	-	164	157737213	coaD	Abu_0967	-	phosphopantetheine adenylyltransferase
943	 27.21	0	974982..975536	-	184	157737214	ubiD	Abu_0968	-	phenylacrylic acid decarboxylase
944	 24.56	0	975747..976373	+	208	157737215	-	Abu_0969	-	resolvase family site-specific recombinase
945	 26.62	0	976447..976893	+	148	157737216	rplI	Abu_0970	-	50S ribosomal protein L9
946	 31.47	+1	976899..977435	+	178	157737217	hslV	Abu_0971	-	ATP-dependent protease peptidase subunit
947	 28.74	0	977443..978771	+	442	157737218	hslU	Abu_0972	-	ATP-dependent protease ATP-binding subunit
948	 23.53	0	978824..979129	+	101	157737219	-	Abu_0973	-	hypothetical protein
949	 26.20	0	979287..979931	+	214	157737220	-	Abu_0974	-	TatD-related deoxyribonuclease
950	 23.89	0	979967..981226	+	419	157737221	-	Abu_0975	-	putative lytic murein transglycosylase
951	 28.68	0	981210..982154	+	314	157737222	rlpA	Abu_0976	-	rare lipoprotein A
952	 31.24	+1	982164..982736	+	190	157737223	hisB	Abu_0977	-	imidazoleglycerol-phosphate dehydratase
953	 28.11	0	982733..983230	+	165	157737224	-	Abu_0978	-	HAD-superfamily phosphatase
954	 21.73	-1	983221..983763	+	180	157737225	-	Abu_0979	-	hypothetical protein
955	 26.46	0	983763..984257	+	164	157737226	-	Abu_0980	-	OstA family protein
956	 27.53	0	984257..984859	+	200	157737227	-	Abu_0981	-	putative ATP /GTP binding protein
957	 30.95	+1	984849..985310	+	153	157737228	-	Abu_0982	-	acetyltransferase
958	 23.27	-1	985376..985852	+	158	157737229	-	Abu_0983	-	ECF subfamily RNA polymerase sigma factor
959	 22.19	-1	985853..986821	+	322	157737230	-	Abu_0984	-	sigma factor regulatory protein FecR/PupR family
960	 29.39	0	986960..989317	+	785	157737231	-	Abu_0985	-	TonB-dependent receptor protein
961	 28.63	0	989362..990318	-	318	157737232	argC	Abu_0986	-	N-acetyl-gamma-glutamyl-phosphate reductase
962	 24.25	0	990374..991738	-	454	157737233	-	Abu_0987	-	GntR family transcriptional regulator
963	 27.60	0	991829..992194	+	121	157737234	-	Abu_0988	-	FMN-binding protein
964	 25.83	0	992207..992806	+	199	157737235	-	Abu_0989	-	putative antibiotic resistance protein
965	 25.72	0	992814..994469	-	551	157737236	-	Abu_0990	-	AcrB/AcrD/AcrF family protein
966	 26.49	0	994466..996028	-	520	157737237	-	Abu_0991	-	AcrB/AcrD/AcrF family protein
967	 24.24	0	996015..996740	-	241	157737238	-	Abu_0992	-	AcrA/AcrE family protein
968	 24.46	0	996737..998089	-	450	157737239	-	Abu_0993	-	outer membrane efflux protein
969	 24.95	0	998218..1000161	-	647	157737240	-	Abu_0994	-	response regulator receiver
970	 28.65	0	1000190..1000915	-	241	157737241	fliP	Abu_0995	-	flagellar biosynthesis protein FliP
971	 28.62	0	1000991..1002772	-	593	157737242	pbpC	Abu_0996	-	penicillin-binding protein
972	 18.65	-2	1002769..1003197	-	142	157737243	-	Abu_0997	-	hypothetical protein
973	 25.10	0	1003206..1004480	-	424	157737244	-	Abu_0998	-	hypothetical protein
974	 21.28	-1	1004473..1005285	-	270	157737245	ftsX	Abu_0999	-	cell division protein FtsX
975	 27.30	0	1005272..1005934	-	220	157737246	ftsE	Abu_1000	-	cell division ATP-binding protein FtsE
976	 24.87	0	1005931..1007124	-	397	157737247	-	Abu_1001	-	tRNA (guanine-N(7))-methyltransferase
977	 28.82	0	1007132..1008394	-	420	157737248	-	Abu_1002	-	fibronectin type III domain-containing protein
978	 26.75	0	1008342..1009328	-	328	157737249	rluD	Abu_1003	-	ribosomal large subunit pseudouridine synthase D
979	 25.95	0	1009348..1010457	+	369	157737250	mrdB	Abu_1004	-	rod shape-determining protein RodA
980	 23.72	0	1010481..1011260	-	259	157737251	-	Abu_1005	-	hypothetical protein
981	 30.99	+1	1011293..1012573	+	426	157737252	hemL	Abu_1006	-	glutamate-1-semialdehyde aminotransferase
982	 27.30	0	1012587..1012901	+	104	157737253	-	Abu_1007	-	hypothetical protein
983	 29.45	0	1012912..1013220	+	102	157737254	-	Abu_1008	-	hypothetical protein
984	 22.78	-1	1013159..1013755	+	198	157737255	-	Abu_1009	-	hypothetical protein
985	 22.42	-1	1013764..1014450	-	228	157737256	-	Abu_1010	-	hypothetical protein
986	 28.12	0	1014453..1016333	-	626	157737257	rpoD	Abu_1011	-	RNA polymerase sigma factor RpoD
987	 30.54	+1	1016501..1017001	+	166	157737258	leuD	Abu_1012	-	3-isopropylmalate dehydratase, small subunit
988	 30.71	+1	1017002..1018069	+	355	157737259	leuB	Abu_1013	-	3-isopropylmalate dehydrogenase
989	 28.60	0	1018091..1019020	+	309	157737260	-	Abu_1014	-	exopolyphosphatase-related protein
990	 24.72	0	1019031..1019390	-	119	157737261	-	Abu_1015	-	HIT family protein
991	 28.95	0	1019615..1019728	+	37	157737262	rpmJ	Abu_1016	-	50S ribosomal protein L36
992	 31.44	+1	1019734..1020102	+	122	157737263	rpsM	Abu_1017	-	30S ribosomal protein S13
993	 35.11	+2	1020113..1020505	+	130	157737264	rpsK	Abu_1018	-	30S ribosomal protein S11
994	 31.90	+1	1020516..1021142	+	208	157737265	rpsD	Abu_1019	-	30S ribosomal protein S4
995	 29.83	0	1021160..1022158	+	332	157737266	rpoA	Abu_1020	-	DNA-directed RNA polymerase subunit alpha
996	 30.48	+1	1022173..1022523	+	116	157737267	rplQ	Abu_1021	-	50S ribosomal protein L17
997	 30.62	+1	1022677..1024038	+	453	157737268	gatA	Abu_1022	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
998	 32.71	+1	1024058..1025503	+	481	157737269	guaB	Abu_1023	-	inositol-5-monophosphate dehydrogenase
999	 26.49	0	1025653..1026105	+	150	157737270	-	Abu_1024	-	hypothetical protein
1000	 21.69	-1	1026129..1026626	-	165	157737271	-	Abu_1025	-	hypothetical protein
1001	 23.11	-1	1026680..1028254	-	524	157737272	-	Abu_1026	-	two-component sensor histidine kinase
1002	 21.19	-1	1028265..1028939	-	224	157737273	-	Abu_1027	-	two-component response regulator
1003	 26.50	0	1029118..1030917	+	599	157737274	-	Abu_1028	-	outer membrane efflux protein, putative
1004	 27.73	0	1030927..1031640	+	237	157737275	-	Abu_1029	-	hypothetical protein
1005	 29.73	0	1031657..1039210	+	2517	157737276	-	Abu_1030	-	hypothetical protein
1006	 25.98	0	1039230..1040576	+	448	157737277	-	Abu_1031	-	hypothetical protein
1007	 24.09	0	1040576..1042696	+	706	157737278	-	Abu_1032	-	M50 family peptidase
1008	 21.33	-1	1042726..1043208	-	160	157737279	-	Abu_1033	-	DnaJ domain-containing protein
1009	 23.97	0	1043296..1043562	+	88	157737280	-	Abu_1034	-	DnaJ domain-containing protein
1010	 25.48	0	1043575..1044669	+	364	157737281	-	Abu_1035	-	glycosyl hydrolase
1011	 21.44	-1	1044673..1046580	-	635	157737282	-	Abu_1036	-	two-component sensor histidine kinase
1012	 19.05	-2	1046583..1047254	-	223	157737283	-	Abu_1037	-	two-component response regulator
1013	 24.37	0	1047373..1047885	-	170	157737284	-	Abu_1038	-	hypothetical protein
1014	 26.11	0	1048005..1048793	-	262	157737285	-	Abu_1039	-	ABC transporter, ATP-binding protein
1015	 27.50	0	1048932..1049411	+	159	157737286	-	Abu_1040	-	ECF subfamily RNA polymerase sigma factor
1016	 23.43	-1	1049408..1050346	+	312	157737287	-	Abu_1041	-	sigma factor regulatory protein FecR/PupR family
1017	 35.32	+2	1050422..1051477	+	351	157737288	-	Abu_1042	-	NADP-dependent alcohol dehydrogenase
1018	 24.80	0	1051503..1052123	+	206	157737289	-	Abu_1043	-	hypothetical protein
1019	 26.43	0	1052120..1052713	-	197	157737290	-	Abu_1044	-	cyclic nucleotide-binding protein
1020	 23.70	0	1052826..1053707	+	293	157737291	-	Abu_1045	-	hypothetical protein
1021	 29.78	0	1053711..1054076	-	121	157737292	-	Abu_1046	-	hypothetical protein
1022	 25.37	0	1054174..1054713	+	179	157737293	-	Abu_1047	-	hypothetical protein
1023	 23.97	0	1054736..1056091	-	451	157737294	-	Abu_1048	-	putative sodium:sulfate symporter
1024	 30.19	0	1056125..1056442	-	105	157737295	sugE	Abu_1049	-	suppresses groEL, may be chaperone
1025	 23.81	0	1056578..1057459	+	293	157737296	-	Abu_1050	-	transporter
1026	 19.21	-2	1057474..1058280	+	268	157737297	-	Abu_1051	-	AraC family transcriptional regulator
1027	 31.81	+1	1058345..1058869	+	174	157737298	-	Abu_1052	-	hypothetical protein
1028	 23.33	-1	1058872..1059741	-	289	157737299	-	Abu_1053	-	LysR family transcriptional regulator
1029	 25.22	0	1059841..1060863	+	340	157737300	-	Abu_1054	-	putative integral membrane protein
1030	 23.62	0	1060882..1061622	-	246	157737301	-	Abu_1055	-	periplasmic protein
1031	 28.02	0	1061709..1062611	-	300	157737302	-	Abu_1056	-	auxin efflux carrier protein
1032	 28.23	0	1062615..1062986	-	123	157737303	-	Abu_1057	-	hypothetical protein
1033	 27.15	0	1063121..1063702	+	193	157737304	-	Abu_1058	-	flavodoxin-like fold domain-containing protein
1034	 22.56	-1	1063712..1064008	+	98	157737305	-	Abu_1059	-	hypothetical protein
1035	 27.78	0	1064021..1065046	+	341	157737306	-	Abu_1060	-	NADH:flavin oxidoreductase/NADH oxidase
1036	 26.98	0	1065064..1065960	+	298	157737307	-	Abu_1061	-	hypothetical protein
1037	 28.93	0	1065988..1066623	+	211	157737308	-	Abu_1062	-	NAD(P)H-flavin nitroreductase
1038	 27.38	0	1066736..1068229	+	497	157737309	-	Abu_1063	-	hypothetical protein
1039	 29.08	0	1068311..1069909	+	532	157737310	-	Abu_1064	-	ABC transporter, ATP-binding protein
1040	 30.82	+1	1069964..1070440	-	158	157737311	-	Abu_1065	-	acyl-CoA thioester hydrolase family protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.