IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
893	 25.07	0	914443..914805	-	120	157737164	-	Abu_0918	-	hypothetical protein
894	 22.26	-1	914821..915606	-	261	157737165	-	Abu_0919	-	hypothetical protein
895	 27.95	0	915954..916547	-	197	157737166	-	Abu_0920	-	hypothetical protein
896	 33.01	+1	916582..918117	-	511	157737167	guaA	Abu_0921	-	bifunctional GMP synthase/glutamine amidotransferase protein
897	 30.17	0	918182..919633	-	483	157737168	nadB	Abu_0922	-	L-aspartate oxidase
898	 22.06	-1	919732..920148	+	138	157737169	-	Abu_0923	-	hypothetical protein
899	 21.89	-1	920132..920725	-	197	157737170	-	Abu_0924	-	hypothetical protein
900	 31.28	+1	920807..921973	+	388	157737171	aspB3	Abu_0925	-	aspartate aminotransferase
901	 26.51	0	921977..922870	+	297	157737172	-	Abu_0926	-	cation efflux protein
902	 24.08	0	922929..925262	+	777	157737173	-	Abu_0927	-	hypothetical protein
903	 24.91	0	925249..927420	+	723	157737174	cyaA	Abu_0928	-	adenylate/guanylate cyclase
904	 24.20	0	927417..928730	-	437	157737175	-	Abu_0929	-	hypothetical protein
905	 28.38	0	928739..929929	-	396	157737176	-	Abu_0930	-	hypothetical protein
906	 28.54	0	930114..931301	+	395	157737177	-	Abu_0931	-	hypothetical protein
907	 23.93	0	931348..932262	+	304	157737178	-	Abu_0932	-	hypothetical protein
908	 32.53	+1	932302..933549	+	415	157737179	-	Abu_0933	-	major facilitator superfamily protein, putative oxalate:formate antiporter
909	 29.75	0	933647..934372	+	241	157737180	-	Abu_0934	-	hypothetical protein
910	 26.20	0	934374..934976	+	200	157737181	cbiM	Abu_0935	-	cobalamin (vitamin B12) biosynthesis protein
911	 24.11	0	934973..935449	+	158	157737182	-	Abu_0936	-	hypothetical protein
912	 21.86	-1	935446..936090	+	214	157737183	-	Abu_0937	-	cobalt ABC transporter, permease protein, putative
913	 25.96	0	936087..936737	+	216	157737184	-	Abu_0938	-	cobalt ABC transporter, ATP-binding protein, putative
914	 24.43	0	936838..938466	+	542	157737185	-	Abu_0939	-	hemolysin activation protein HecB, putative
915	 26.68	0	938478..947579	+	3033	157737186	-	Abu_0940	-	adhesin/hemagglutinin
916	 23.56	0	947591..948460	+	289	157737187	-	Abu_0941	-	hypothetical protein
917	 19.80	-2	948482..949264	+	260	157737188	-	Abu_0942	-	hypothetical protein
918	 28.75	0	949266..951644	+	792	157737189	-	Abu_0943	-	hypothetical protein
919	 25.93	0	951646..952374	+	242	157737190	-	Abu_0944	-	hypothetical protein
920	 26.51	0	952410..952658	+	82	157737191	-	Abu_0945	-	hypothetical protein
921	 25.38	0	952661..953377	+	238	157737192	-	Abu_0946	-	hypothetical protein
922	 23.59	0	953396..954052	+	218	157737193	-	Abu_0947	-	hypothetical protein
923	 24.42	0	954128..954688	+	186	157737194	-	Abu_0948	-	hypothetical protein
924	 31.27	+1	954747..955133	-	128	157737195	-	Abu_0949	-	hypothetical protein
925	 23.57	0	955144..955962	-	272	157737196	-	Abu_0950	-	hypothetical protein
926	 30.28	0	956182..956934	-	250	157737197	-	Abu_0951	-	hypothetical protein
927	 23.70	0	957100..958230	+	376	157737198	-	Abu_0952	-	hypothetical protein
928	 23.39	-1	958265..959350	+	361	157737199	-	Abu_0953	-	putative permease
929	 23.23	-1	959381..959944	+	187	157737200	-	Abu_0954	-	hypothetical protein
930	 25.43	0	959953..960357	+	134	157737201	-	Abu_0955	-	hypothetical protein
931	 26.10	0	960373..962736	-	787	157737202	-	Abu_0956	-	hypothetical protein
932	 31.37	+1	962866..963222	+	118	157737203	-	Abu_0957	-	hypothetical protein
933	 30.88	+1	963270..966083	-	937	157737204	uvrA	Abu_0958	-	excinuclease ABC subunit A
934	 24.82	0	966185..966736	-	183	157737205	-	Abu_0959	-	hypothetical protein
935	 30.66	+1	967016..967426	+	136	157737206	-	Abu_0960	-	methyl-accepting chemotaxis protein
936	 32.99	+1	967475..969232	-	585	157737207	ggt	Abu_0961	-	gamma-glutamyltranspeptidase
937	 29.33	0	969416..970015	-	199	157737208	-	Abu_0962	-	hypothetical protein
938	 30.88	+1	970156..970890	-	244	157737209	cysE	Abu_0963	-	serine acetyltransferase
939	 27.32	0	970880..972691	-	603	157737210	speA	Abu_0964	-	arginine decarboxylase
940	 28.34	0	972692..973933	-	413	157737211	hisS	Abu_0965	-	histidyl-tRNA synthetase
941	 26.49	0	973923..974492	-	189	157737212	tmk	Abu_0966	-	thymidylate kinase
942	 27.68	0	974483..974977	-	164	157737213	coaD	Abu_0967	-	phosphopantetheine adenylyltransferase
943	 27.21	0	974982..975536	-	184	157737214	ubiD	Abu_0968	-	phenylacrylic acid decarboxylase
944	 24.56	0	975747..976373	+	208	157737215	-	Abu_0969	-	resolvase family site-specific recombinase
945	 26.62	0	976447..976893	+	148	157737216	rplI	Abu_0970	-	50S ribosomal protein L9
946	 31.47	+1	976899..977435	+	178	157737217	hslV	Abu_0971	-	ATP-dependent protease peptidase subunit
947	 28.74	0	977443..978771	+	442	157737218	hslU	Abu_0972	-	ATP-dependent protease ATP-binding subunit
948	 23.53	0	978824..979129	+	101	157737219	-	Abu_0973	-	hypothetical protein
949	 26.20	0	979287..979931	+	214	157737220	-	Abu_0974	-	TatD-related deoxyribonuclease
950	 23.89	0	979967..981226	+	419	157737221	-	Abu_0975	-	putative lytic murein transglycosylase
951	 28.68	0	981210..982154	+	314	157737222	rlpA	Abu_0976	-	rare lipoprotein A
952	 31.24	+1	982164..982736	+	190	157737223	hisB	Abu_0977	-	imidazoleglycerol-phosphate dehydratase
953	 28.11	0	982733..983230	+	165	157737224	-	Abu_0978	-	HAD-superfamily phosphatase
954	 21.73	-1	983221..983763	+	180	157737225	-	Abu_0979	-	hypothetical protein
955	 26.46	0	983763..984257	+	164	157737226	-	Abu_0980	-	OstA family protein
956	 27.53	0	984257..984859	+	200	157737227	-	Abu_0981	-	putative ATP /GTP binding protein
957	 30.95	+1	984849..985310	+	153	157737228	-	Abu_0982	-	acetyltransferase
958	 23.27	-1	985376..985852	+	158	157737229	-	Abu_0983	-	ECF subfamily RNA polymerase sigma factor
959	 22.19	-1	985853..986821	+	322	157737230	-	Abu_0984	-	sigma factor regulatory protein FecR/PupR family
960	 29.39	0	986960..989317	+	785	157737231	-	Abu_0985	-	TonB-dependent receptor protein
961	 28.63	0	989362..990318	-	318	157737232	argC	Abu_0986	-	N-acetyl-gamma-glutamyl-phosphate reductase
962	 24.25	0	990374..991738	-	454	157737233	-	Abu_0987	-	GntR family transcriptional regulator
963	 27.60	0	991829..992194	+	121	157737234	-	Abu_0988	-	FMN-binding protein
964	 25.83	0	992207..992806	+	199	157737235	-	Abu_0989	-	putative antibiotic resistance protein
965	 25.72	0	992814..994469	-	551	157737236	-	Abu_0990	-	AcrB/AcrD/AcrF family protein
966	 26.49	0	994466..996028	-	520	157737237	-	Abu_0991	-	AcrB/AcrD/AcrF family protein
967	 24.24	0	996015..996740	-	241	157737238	-	Abu_0992	-	AcrA/AcrE family protein
968	 24.46	0	996737..998089	-	450	157737239	-	Abu_0993	-	outer membrane efflux protein
969	 24.95	0	998218..1000161	-	647	157737240	-	Abu_0994	-	response regulator receiver
970	 28.65	0	1000190..1000915	-	241	157737241	fliP	Abu_0995	-	flagellar biosynthesis protein FliP
971	 28.62	0	1000991..1002772	-	593	157737242	pbpC	Abu_0996	-	penicillin-binding protein
972	 18.65	-2	1002769..1003197	-	142	157737243	-	Abu_0997	-	hypothetical protein
973	 25.10	0	1003206..1004480	-	424	157737244	-	Abu_0998	-	hypothetical protein
974	 21.28	-1	1004473..1005285	-	270	157737245	ftsX	Abu_0999	-	cell division protein FtsX
975	 27.30	0	1005272..1005934	-	220	157737246	ftsE	Abu_1000	-	cell division ATP-binding protein FtsE
976	 24.87	0	1005931..1007124	-	397	157737247	-	Abu_1001	-	tRNA (guanine-N(7))-methyltransferase
977	 28.82	0	1007132..1008394	-	420	157737248	-	Abu_1002	-	fibronectin type III domain-containing protein
978	 26.75	0	1008342..1009328	-	328	157737249	rluD	Abu_1003	-	ribosomal large subunit pseudouridine synthase D
979	 25.95	0	1009348..1010457	+	369	157737250	mrdB	Abu_1004	-	rod shape-determining protein RodA
980	 23.72	0	1010481..1011260	-	259	157737251	-	Abu_1005	-	hypothetical protein
981	 30.99	+1	1011293..1012573	+	426	157737252	hemL	Abu_1006	-	glutamate-1-semialdehyde aminotransferase
982	 27.30	0	1012587..1012901	+	104	157737253	-	Abu_1007	-	hypothetical protein
983	 29.45	0	1012912..1013220	+	102	157737254	-	Abu_1008	-	hypothetical protein
984	 22.78	-1	1013159..1013755	+	198	157737255	-	Abu_1009	-	hypothetical protein
985	 22.42	-1	1013764..1014450	-	228	157737256	-	Abu_1010	-	hypothetical protein
986	 28.12	0	1014453..1016333	-	626	157737257	rpoD	Abu_1011	-	RNA polymerase sigma factor RpoD
987	 30.54	+1	1016501..1017001	+	166	157737258	leuD	Abu_1012	-	3-isopropylmalate dehydratase, small subunit
988	 30.71	+1	1017002..1018069	+	355	157737259	leuB	Abu_1013	-	3-isopropylmalate dehydrogenase
989	 28.60	0	1018091..1019020	+	309	157737260	-	Abu_1014	-	exopolyphosphatase-related protein
990	 24.72	0	1019031..1019390	-	119	157737261	-	Abu_1015	-	HIT family protein
991	 28.95	0	1019615..1019728	+	37	157737262	rpmJ	Abu_1016	-	50S ribosomal protein L36
992	 31.44	+1	1019734..1020102	+	122	157737263	rpsM	Abu_1017	-	30S ribosomal protein S13
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.