IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
828	 22.45	-1	858698..859414	-	238	157737099	-	Abu_0853	-	hypothetical protein
829	 31.79	+1	859644..859967	+	107	157737100	oorD	Abu_0854	-	2-oxoglutarate-acceptor oxidoreductase subunit OorD
830	 33.07	+1	859976..861106	+	376	157737101	oorA	Abu_0855	-	2-oxoglutarate-acceptor oxidoreductase subunit OorA
831	 30.82	+1	861108..861941	+	277	157737102	oorB	Abu_0856	-	2-oxoglutarate-acceptor oxidoreductase subunit OorB
832	 30.60	+1	861949..862533	+	194	157737103	oorC	Abu_0857	-	2-oxoglutarate-acceptor oxidoreductase subunit OorC
833	 22.95	-1	862557..863375	-	272	157737104	dnaQ3	Abu_0858	-	DNA polymerase III subunit epsilon
834	 26.09	0	863362..863955	-	197	157737105	trpF	Abu_0859	-	N-(5'phosphoribosyl)anthranilate isomerase
835	 30.22	0	863952..864593	-	213	157737106	rpe	Abu_0860	-	ribulose-phosphate 3-epimerase
836	 25.91	0	864701..865711	+	336	157737107	pldA	Abu_0861	-	outer membrane phospholipase A
837	 24.11	0	865721..866143	-	140	157737108	-	Abu_0862	-	hypothetical protein
838	 25.26	0	866146..866727	-	193	157737109	-	Abu_0863	-	hypothetical protein
839	 27.15	0	866739..867239	-	166	157737110	-	Abu_0864	-	hypothetical protein
840	 21.96	-1	867289..868044	-	251	157737111	-	Abu_0865	-	hypothetical protein
841	 25.26	0	868045..868428	-	127	157737112	-	Abu_0866	-	hypothetical protein
842	 24.61	0	868441..868887	-	148	157737113	-	Abu_0867	-	putative nucleotide phosphoribosyltransferase
843	 24.65	0	869002..869646	+	214	157737114	-	Abu_0868	-	hypothetical protein
844	 25.87	0	869649..869849	-	66	157737115	-	Abu_0869	-	hypothetical protein
845	 27.17	0	869853..870533	-	226	157737116	-	Abu_0870	-	hypothetical protein
846	 28.90	0	870545..871603	-	352	157737117	-	Abu_0871	-	membrane-associated zinc metalloprotease, putative
847	 32.42	+1	871613..872158	-	181	157737118	pgsA	Abu_0872	-	CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyltransferase
848	 31.92	+1	872158..872937	-	259	157737119	-	Abu_0873	-	7-alpha-hydroxysteroid dehydrogenase
849	 31.08	+1	872937..873824	-	295	157737120	dapA	Abu_0874	-	dihydrodipicolinate synthase
850	 25.77	0	873848..875182	-	444	157737121	-	Abu_0875	-	putative zinc protease
851	 28.23	0	875182..876240	-	352	157737122	pyrD	Abu_0876	-	dihydroorotate dehydrogenase 2
852	 26.55	0	876284..877993	-	569	157737123	msbA	Abu_0877	-	multidrug resistance protein MsbA
853	 24.58	0	878051..879352	-	433	157737124	mviN	Abu_0878	-	virulence factor MviN protein
854	 20.94	-1	879352..880932	-	526	157737125	-	Abu_0879	-	endonuclease/exonuclease/phosphatase
855	 26.42	0	881116..881520	+	134	157737126	perR	Abu_0880	-	peroxide stress regulator
856	 24.35	0	881545..881967	-	140	157737127	-	Abu_0881	-	putative metalloprotease
857	 31.85	+1	882058..882462	+	134	157737128	-	Abu_0882	-	hypothetical protein
858	 24.56	0	882468..883094	-	208	157737129	-	Abu_0883	-	S51 family peptidase
859	 29.63	0	883110..884459	-	449	157737130	radA	Abu_0884	-	DNA repair protein RadA
860	 25.53	0	884577..885140	+	187	157737131	-	Abu_0885	-	hypothetical protein
861	 26.14	0	885240..886157	+	305	157737132	-	Abu_0886	-	cytochrome c peroxidase
862	 22.05	-1	886135..888615	+	826	157737133	-	Abu_0887	-	EAL/GGDEF/PAS domain-containing protein
863	 25.03	0	888617..889459	-	280	157737134	-	Abu_0888	-	hypothetical protein
864	 30.54	+1	889477..890406	-	309	157737135	ftsY	Abu_0889	-	signal recognition particle-docking GTPase FtsY
865	 24.28	0	890419..890970	-	183	157737136	-	Abu_0890	-	putative lipoprotein thiredoxin
866	 22.91	-1	891032..891568	+	178	157737137	-	Abu_0891	-	putative 5-formyltetrahydrofolate cyclo-ligase
867	 31.72	+1	891581..893125	+	514	157737138	-	Abu_0892	-	phosphodiesterase
868	 25.42	0	893144..893737	+	197	157737139	-	Abu_0893	-	putative methyltransferase
869	 28.61	0	893697..894542	+	281	157737140	-	Abu_0894	-	ABC transporter, permease protein
870	 27.08	0	894582..895013	+	143	157737141	-	Abu_0895	-	hypothetical protein
871	 22.62	-1	895010..895345	-	111	157737142	-	Abu_0896	-	hypothetical protein
872	 31.21	+1	895423..895563	+	46	157737143	-	Abu_0897	-	hypothetical protein
873	 25.44	0	895563..895790	+	75	157737144	-	Abu_0898	-	hypothetical protein
874	 26.03	0	895885..896706	-	273	157737145	-	Abu_0899	-	short chain dehydrogenase/reductase family oxidoreductase
875	 26.44	0	896778..897560	+	260	157737146	-	Abu_0900	-	hypothetical protein
876	 20.59	-1	897584..898894	+	436	157737147	-	Abu_0901	-	hypothetical protein
877	 32.13	+1	898912..899988	+	358	157737148	-	Abu_0902	-	cytochrome c family protein
878	 22.54	-1	900004..900948	+	314	157737149	-	Abu_0903	-	putative methyl-accepting chemotaxis protein
879	 25.04	0	900945..901607	+	220	157737150	-	Abu_0904	-	two-component response regulator
880	 21.93	-1	901594..902742	+	382	157737151	-	Abu_0905	-	two-component sensor histidine kinase
881	 25.65	0	902800..903645	+	281	157737152	-	Abu_0906	-	molybdenum transport system protein ModD, putative
882	 27.15	0	903659..904774	-	371	157737153	-	Abu_0907	-	GGDEF domain-containing protein
883	 30.18	0	904796..905239	-	147	157737154	-	Abu_0908	-	GatB/YqeY family protein
884	 28.87	0	905278..907227	-	649	157737155	-	Abu_0909	-	ABC transporter, ATP-binding protein
885	 30.38	0	907385..907993	+	202	157737156	-	Abu_0910	-	hypothetical protein
886	 30.30	0	908008..908601	-	197	157737157	-	Abu_0911	-	hypothetical protein
887	 23.79	0	908683..909384	-	233	157737158	-	Abu_0912	-	hypothetical protein
888	 26.19	0	909766..911067	-	433	157737159	-	Abu_0913	-	hypothetical protein
889	 25.86	0	911155..911502	-	115	157737160	-	Abu_0914	-	hypothetical protein
890	 22.55	-1	911511..912020	-	169	157737161	-	Abu_0915	-	hypothetical protein
891	 30.40	0	912108..913811	+	567	157737162	-	Abu_0916	-	hypothetical protein
892	 38.60	+2	914024..914365	-	113	157737163	-	Abu_0917	-	hypothetical protein
893	 25.07	0	914443..914805	-	120	157737164	-	Abu_0918	-	hypothetical protein
894	 22.26	-1	914821..915606	-	261	157737165	-	Abu_0919	-	hypothetical protein
895	 27.95	0	915954..916547	-	197	157737166	-	Abu_0920	-	hypothetical protein
896	 33.01	+1	916582..918117	-	511	157737167	guaA	Abu_0921	-	bifunctional GMP synthase/glutamine amidotransferase protein
897	 30.17	0	918182..919633	-	483	157737168	nadB	Abu_0922	-	L-aspartate oxidase
898	 22.06	-1	919732..920148	+	138	157737169	-	Abu_0923	-	hypothetical protein
899	 21.89	-1	920132..920725	-	197	157737170	-	Abu_0924	-	hypothetical protein
900	 31.28	+1	920807..921973	+	388	157737171	aspB3	Abu_0925	-	aspartate aminotransferase
901	 26.51	0	921977..922870	+	297	157737172	-	Abu_0926	-	cation efflux protein
902	 24.08	0	922929..925262	+	777	157737173	-	Abu_0927	-	hypothetical protein
903	 24.91	0	925249..927420	+	723	157737174	cyaA	Abu_0928	-	adenylate/guanylate cyclase
904	 24.20	0	927417..928730	-	437	157737175	-	Abu_0929	-	hypothetical protein
905	 28.38	0	928739..929929	-	396	157737176	-	Abu_0930	-	hypothetical protein
906	 28.54	0	930114..931301	+	395	157737177	-	Abu_0931	-	hypothetical protein
907	 23.93	0	931348..932262	+	304	157737178	-	Abu_0932	-	hypothetical protein
908	 32.53	+1	932302..933549	+	415	157737179	-	Abu_0933	-	major facilitator superfamily protein, putative oxalate:formate antiporter
909	 29.75	0	933647..934372	+	241	157737180	-	Abu_0934	-	hypothetical protein
910	 26.20	0	934374..934976	+	200	157737181	cbiM	Abu_0935	-	cobalamin (vitamin B12) biosynthesis protein
911	 24.11	0	934973..935449	+	158	157737182	-	Abu_0936	-	hypothetical protein
912	 21.86	-1	935446..936090	+	214	157737183	-	Abu_0937	-	cobalt ABC transporter, permease protein, putative
913	 25.96	0	936087..936737	+	216	157737184	-	Abu_0938	-	cobalt ABC transporter, ATP-binding protein, putative
914	 24.43	0	936838..938466	+	542	157737185	-	Abu_0939	-	hemolysin activation protein HecB, putative
915	 26.68	0	938478..947579	+	3033	157737186	-	Abu_0940	-	adhesin/hemagglutinin
916	 23.56	0	947591..948460	+	289	157737187	-	Abu_0941	-	hypothetical protein
917	 19.80	-2	948482..949264	+	260	157737188	-	Abu_0942	-	hypothetical protein
918	 28.75	0	949266..951644	+	792	157737189	-	Abu_0943	-	hypothetical protein
919	 25.93	0	951646..952374	+	242	157737190	-	Abu_0944	-	hypothetical protein
920	 26.51	0	952410..952658	+	82	157737191	-	Abu_0945	-	hypothetical protein
921	 25.38	0	952661..953377	+	238	157737192	-	Abu_0946	-	hypothetical protein
922	 23.59	0	953396..954052	+	218	157737193	-	Abu_0947	-	hypothetical protein
923	 24.42	0	954128..954688	+	186	157737194	-	Abu_0948	-	hypothetical protein
924	 31.27	+1	954747..955133	-	128	157737195	-	Abu_0949	-	hypothetical protein
925	 23.57	0	955144..955962	-	272	157737196	-	Abu_0950	-	hypothetical protein
926	 30.28	0	956182..956934	-	250	157737197	-	Abu_0951	-	hypothetical protein
927	 23.70	0	957100..958230	+	376	157737198	-	Abu_0952	-	hypothetical protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.