IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
769	 27.00	0	794444..796447	+	667	157737040	-	Abu_0789	-	methyl-accepting chemotaxis protein
770	 28.87	0	796489..798483	+	664	157737041	-	Abu_0790	-	methyl-accepting chemotaxis protein
771	 27.60	0	798834..800858	+	674	157737042	-	Abu_0791	-	methyl-accepting chemotaxis protein
772	 23.83	0	800866..801528	-	220	157737043	-	Abu_0792	-	two-component response regulator
773	 23.76	0	801525..802589	-	354	157737044	-	Abu_0793	-	two component system histidine kinase/response regulator fusion protein
774	 26.11	0	802655..804952	+	765	157737045	-	Abu_0794	-	two-component sensor histidine kinase
775	 30.17	0	804929..805339	-	136	157737046	-	Abu_0795	-	MutT/nudix family protein
776	 21.53	-1	805416..806186	-	256	157737047	-	Abu_0796	-	hypothetical protein
777	 23.69	0	806179..806541	-	120	157737048	-	Abu_0797	-	hypothetical protein
778	 22.13	-1	806534..806890	-	118	157737049	-	Abu_0798	-	hypothetical protein
779	 32.78	+1	806999..808273	+	424	157737050	-	Abu_0799	-	urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein
780	 28.22	0	808330..809934	+	534	157737051	-	Abu_0800	-	urea/short-chain amide ABC transporter, permease protein
781	 31.53	+1	809938..811044	+	368	157737052	-	Abu_0801	-	ABC transporter, permease protein
782	 32.19	+1	811046..811834	+	262	157737053	-	Abu_0802	-	ABC transporter, ATP-binding protein
783	 31.75	+1	811964..812659	+	231	157737054	-	Abu_0803	-	ABC transporter, ATP-binding protein
784	 18.99	-2	812786..813775	+	329	157737055	-	Abu_0804	-	hypothetical protein
785	 22.58	-1	813947..814699	+	250	157737056	ureD	Abu_0805	-	urease accessory protein UreD
786	 30.83	+1	814709..815386	+	225	157737057	ureAB	Abu_0806	-	fusion of urease beta and gamma subunits
787	 33.92	+1	815388..817088	+	566	157737058	ureC	Abu_0807	-	urease subunit alpha
788	 29.75	0	817098..817544	+	148	157737059	ureE	Abu_0808	-	urease accessory protein
789	 25.27	0	817489..818232	+	247	157737060	ureF	Abu_0809	-	urease complex component
790	 28.23	0	818368..818955	+	195	157737061	ureG	Abu_0810	-	urease accessory protein UreG
791	 23.05	-1	819152..819715	-	187	157737062	-	Abu_0811	-	hypothetical protein
792	 21.38	-1	819827..820420	+	197	157737063	-	Abu_0812	-	TetR family transcriptional regulator
793	 31.38	+1	820430..823558	-	1042	157737064	-	Abu_0813	-	hydrophobe/amphiphile efflux-1 family protein
794	 26.44	0	823561..824619	-	352	157737065	-	Abu_0814	-	multidrug efflux RND membrane fusion protein
795	 26.21	0	824616..825851	-	411	157737066	-	Abu_0815	-	outer membrane efflux protein
796	 23.61	0	825933..826436	+	167	157737067	-	Abu_0816	-	MarR family transcriptional regulator
797	 27.40	0	826517..826735	+	72	157737068	-	Abu_0817	-	hypothetical protein
798	 26.98	0	826753..826941	-	62	157737069	-	Abu_0818	-	hypothetical protein
799	 14.17	-2	826954..827073	-	39	157737070	-	Abu_0819	-	hypothetical protein
800	 24.70	0	827157..828812	+	551	157737071	-	Abu_0820	-	GGDEF domain-containing protein
801	 29.66	0	828809..829597	-	262	157737072	xth	Abu_0821	-	exodeoxyribonuclease
802	 21.29	-1	829597..829845	-	82	157737073	-	Abu_0822	-	hypothetical protein
803	 27.52	0	829944..830666	+	240	157737074	-	Abu_0823	-	hypothetical protein
804	 25.25	0	830707..831003	-	98	157737075	-	Abu_0824	-	hypothetical protein
805	 25.52	0	831007..831531	-	174	157737076	-	Abu_0825	-	outer membrane lipoprotein
806	 29.77	0	831694..832929	+	411	157737077	-	Abu_0826	-	hypothetical protein
807	 23.36	-1	832926..833657	+	243	157737078	-	Abu_0827	-	hypothetical protein
808	 25.15	0	833647..834978	-	443	157737079	-	Abu_0828	-	ABC transporter protein
809	 29.60	0	835203..835550	-	115	157737080	-	Abu_0829	-	hypothetical protein
810	 25.58	0	835477..836547	-	356	157737081	-	Abu_0830	-	EAL domain-containing protein
811	 24.29	0	836612..837319	-	235	157737082	-	Abu_0831	-	two-component response regulator
812	 19.48	-2	837316..838311	-	331	157737083	-	Abu_0832	-	two-component sensor histidine kinase
813	 22.81	-1	838339..839754	-	471	157737084	-	Abu_0833	-	carotenoid isomerase, putative
814	 24.24	0	839741..841093	-	450	157737085	phrB	Abu_0834	-	deoxyribodipyrimidine photolyase
815	 24.42	0	841090..842043	-	317	157737086	-	Abu_0835	-	hypothetical protein
816	 23.90	0	842169..843080	-	303	157737087	-	Abu_0836	-	auxin efflux carrier protein, putative
817	 24.13	0	843082..843570	-	162	157737088	-	Abu_0837	-	hypothetical protein
818	 25.47	0	843579..844811	-	410	157737089	pgi	Abu_0838	-	glucose-6-phosphate isomerase
819	 31.00	+1	844811..845668	-	285	157737090	galU	Abu_0839	-	UTP--glucose-1-phosphate uridylyltransferase
820	 28.54	0	845670..847046	-	458	157737091	-	Abu_0840	-	phosphohexosemutase
821	 28.12	0	853283..854683	+	466	157737092	-	Abu_0846	-	methyl-accepting chemotaxis protein
822	 29.38	0	854693..855097	+	134	157737093	-	Abu_0847	-	methyl-accepting chemotaxis protein
823	 31.92	+1	855121..855333	-	70	157737094	-	Abu_0848	-	tautomerase
824	 24.19	0	855424..856254	+	276	157737095	-	Abu_0849	-	LysR family transcriptional regulator
825	 24.49	0	856251..857042	-	263	157737096	trpC	Abu_0850	-	indole-3-glycerol phosphate synthase
826	 22.40	-1	857039..858346	-	435	157737097	-	Abu_0851	-	hypothetical protein
827	 26.82	0	858322..858705	-	127	157737098	-	Abu_0852	-	hypothetical protein
828	 22.45	-1	858698..859414	-	238	157737099	-	Abu_0853	-	hypothetical protein
829	 31.79	+1	859644..859967	+	107	157737100	oorD	Abu_0854	-	2-oxoglutarate-acceptor oxidoreductase subunit OorD
830	 33.07	+1	859976..861106	+	376	157737101	oorA	Abu_0855	-	2-oxoglutarate-acceptor oxidoreductase subunit OorA
831	 30.82	+1	861108..861941	+	277	157737102	oorB	Abu_0856	-	2-oxoglutarate-acceptor oxidoreductase subunit OorB
832	 30.60	+1	861949..862533	+	194	157737103	oorC	Abu_0857	-	2-oxoglutarate-acceptor oxidoreductase subunit OorC
833	 22.95	-1	862557..863375	-	272	157737104	dnaQ3	Abu_0858	-	DNA polymerase III subunit epsilon
834	 26.09	0	863362..863955	-	197	157737105	trpF	Abu_0859	-	N-(5'phosphoribosyl)anthranilate isomerase
835	 30.22	0	863952..864593	-	213	157737106	rpe	Abu_0860	-	ribulose-phosphate 3-epimerase
836	 25.91	0	864701..865711	+	336	157737107	pldA	Abu_0861	-	outer membrane phospholipase A
837	 24.11	0	865721..866143	-	140	157737108	-	Abu_0862	-	hypothetical protein
838	 25.26	0	866146..866727	-	193	157737109	-	Abu_0863	-	hypothetical protein
839	 27.15	0	866739..867239	-	166	157737110	-	Abu_0864	-	hypothetical protein
840	 21.96	-1	867289..868044	-	251	157737111	-	Abu_0865	-	hypothetical protein
841	 25.26	0	868045..868428	-	127	157737112	-	Abu_0866	-	hypothetical protein
842	 24.61	0	868441..868887	-	148	157737113	-	Abu_0867	-	putative nucleotide phosphoribosyltransferase
843	 24.65	0	869002..869646	+	214	157737114	-	Abu_0868	-	hypothetical protein
844	 25.87	0	869649..869849	-	66	157737115	-	Abu_0869	-	hypothetical protein
845	 27.17	0	869853..870533	-	226	157737116	-	Abu_0870	-	hypothetical protein
846	 28.90	0	870545..871603	-	352	157737117	-	Abu_0871	-	membrane-associated zinc metalloprotease, putative
847	 32.42	+1	871613..872158	-	181	157737118	pgsA	Abu_0872	-	CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyltransferase
848	 31.92	+1	872158..872937	-	259	157737119	-	Abu_0873	-	7-alpha-hydroxysteroid dehydrogenase
849	 31.08	+1	872937..873824	-	295	157737120	dapA	Abu_0874	-	dihydrodipicolinate synthase
850	 25.77	0	873848..875182	-	444	157737121	-	Abu_0875	-	putative zinc protease
851	 28.23	0	875182..876240	-	352	157737122	pyrD	Abu_0876	-	dihydroorotate dehydrogenase 2
852	 26.55	0	876284..877993	-	569	157737123	msbA	Abu_0877	-	multidrug resistance protein MsbA
853	 24.58	0	878051..879352	-	433	157737124	mviN	Abu_0878	-	virulence factor MviN protein
854	 20.94	-1	879352..880932	-	526	157737125	-	Abu_0879	-	endonuclease/exonuclease/phosphatase
855	 26.42	0	881116..881520	+	134	157737126	perR	Abu_0880	-	peroxide stress regulator
856	 24.35	0	881545..881967	-	140	157737127	-	Abu_0881	-	putative metalloprotease
857	 31.85	+1	882058..882462	+	134	157737128	-	Abu_0882	-	hypothetical protein
858	 24.56	0	882468..883094	-	208	157737129	-	Abu_0883	-	S51 family peptidase
859	 29.63	0	883110..884459	-	449	157737130	radA	Abu_0884	-	DNA repair protein RadA
860	 25.53	0	884577..885140	+	187	157737131	-	Abu_0885	-	hypothetical protein
861	 26.14	0	885240..886157	+	305	157737132	-	Abu_0886	-	cytochrome c peroxidase
862	 22.05	-1	886135..888615	+	826	157737133	-	Abu_0887	-	EAL/GGDEF/PAS domain-containing protein
863	 25.03	0	888617..889459	-	280	157737134	-	Abu_0888	-	hypothetical protein
864	 30.54	+1	889477..890406	-	309	157737135	ftsY	Abu_0889	-	signal recognition particle-docking GTPase FtsY
865	 24.28	0	890419..890970	-	183	157737136	-	Abu_0890	-	putative lipoprotein thiredoxin
866	 22.91	-1	891032..891568	+	178	157737137	-	Abu_0891	-	putative 5-formyltetrahydrofolate cyclo-ligase
867	 31.72	+1	891581..893125	+	514	157737138	-	Abu_0892	-	phosphodiesterase
868	 25.42	0	893144..893737	+	197	157737139	-	Abu_0893	-	putative methyltransferase
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.