IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
29	 30.43	0	34920..35816	-	298	157736300	gpsA	Abu_0029	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
30	 30.75	+1	35818..37251	-	477	157736301	gatB	Abu_0030	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
31	 26.06	0	37261..38085	-	274	157736302	-	Abu_0031	-	hypothetical protein
32	 29.35	0	38162..40999	-	945	157736303	-	Abu_0032	-	oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein
33	 33.27	+1	41118..42758	-	546	157736304	lctP	Abu_0033	-	L-lactate permease
34	 24.34	0	42849..43493	-	214	157736305	-	Abu_0034	-	two-component response regulator
35	 24.44	0	43495..45687	-	730	157736306	-	Abu_0035	-	two-component sensor histidine kinase
36	 26.36	0	45712..46299	-	195	157736307	-	Abu_0036	-	hypothetical protein
37	 32.68	+1	46292..47671	-	459	157736308	-	Abu_0037	-	iron-sulfur cluster binding protein, putative
38	 28.13	0	47668..48417	-	249	157736309	-	Abu_0038	-	Fe-S oxidoreductase
39	 29.05	0	48510..48953	-	147	157736310	-	Abu_0039	-	dCMP deaminase, putative
40	 33.76	+1	49110..49583	+	157	157736311	accB	Abu_0040	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
41	 31.86	+1	49593..50945	+	450	157736312	accC1	Abu_0041	-	biotin carboxylase
42	 30.24	0	51167..52717	+	516	157736313	-	Abu_0042	-	DEAD-box ATP dependent DNA helicase
43	 32.58	+1	52925..54520	+	531	157736314	-	Abu_0043	-	phosphate permease, putative
44	 24.35	0	54761..55495	+	244	157736315	-	Abu_0044	-	putative permease
45	 24.83	0	55500..57287	+	595	157736316	asnB1	Abu_0045	-	asparagine synthetase (glutamine-hydrolyzing)
46	 24.43	0	57411..57848	-	145	157736317	-	Abu_0046	-	hypothetical protein
47	 24.91	0	58145..59545	-	466	157736318	-	Abu_0047	-	PhoH family protein
48	 24.82	0	59538..60089	-	183	157736319	-	Abu_0048	-	hypothetical protein
49	 27.00	0	60059..61243	-	394	157736320	-	Abu_0049	-	recombination factor protein RarA
50	 27.42	0	61227..62054	-	275	157736321	rluB	Abu_0050	-	ribosomal large subunit pseudouridine synthase B
51	 30.53	+1	62051..63013	-	320	157736322	-	Abu_0051	-	carbohydrate isomerase KpsF/GutQ family protein
52	 28.45	0	63026..64948	-	640	157736323	-	Abu_0052	-	hypothetical protein
53	 27.19	0	64932..65729	-	265	157736324	ksgA	Abu_0053	-	dimethyladenosine transferase
54	 33.07	+1	65806..66567	+	253	157736325	hisF1	Abu_0054	-	imidazoleglycerol phosphate synthase, cyclase subunit
55	 22.08	-1	66569..67252	+	227	157736326	-	Abu_0055	-	hypothetical protein
56	 26.82	0	67249..67785	+	178	157736327	-	Abu_0056	-	purine nucleoside phosphorylase
57	 28.16	0	67796..68878	+	360	157736328	-	Abu_0057	-	hypothetical protein
58	 28.65	0	68967..70376	+	469	157736329	gltX1	Abu_0058	-	glutamyl-tRNA synthetase
59	 32.32	+1	70400..70696	+	98	157736330	rbpA	Abu_0059	-	RNA recognition motif-containing protein
60	 25.00	0	70806..71465	+	219	157736331	-	Abu_0060	-	two-component response regulator
61	 21.79	-1	71440..72591	+	383	157736332	-	Abu_0061	-	two-component sensor histidine kinase
62	 29.43	0	72655..73038	+	127	157736333	-	Abu_0062	-	hypothetical protein
63	 23.32	-1	73038..74225	+	395	157736334	-	Abu_0063	-	hypothetical protein
64	 23.18	-1	74222..75226	+	334	157736335	czcB	Abu_0064	-	cation efflux system, membrane fusion protein
65	 27.35	0	75233..78340	+	1035	157736336	czcA	Abu_0065	-	heavy metal efflux pump
66	 29.08	0	78389..78952	+	187	157736337	-	Abu_0066	-	periplasmic protein
67	 23.93	0	78983..80311	-	442	157736338	-	Abu_0067	-	fibronectin/fibrinogen-binding protein, putative
68	 31.45	+1	80405..80722	+	105	157736339	-	Abu_0068	-	hypothetical protein
69	 31.71	+1	80789..82393	+	534	157736340	-	Abu_0069	-	hypothetical protein
70	 19.38	-2	82420..82935	-	171	157736341	-	Abu_0070	-	hypothetical protein
71	 29.68	0	83047..84855	+	602	157736342	thrS	Abu_0071	-	threonyl-tRNA synthetase
72	 30.30	0	84852..85379	+	175	157736343	infC	Abu_0072	-	translation initiation factor IF-3
73	 30.81	+1	85518..85715	+	65	157736344	rpmI	Abu_0073	-	50S ribosomal protein L35
74	 30.25	0	85814..86170	+	118	157736345	rplT	Abu_0074	-	50S ribosomal protein L20
75	 28.15	0	86243..87439	-	398	157736346	-	Abu_0075	-	rhodanese-like sulfur transferase
76	 23.63	0	87423..87659	-	78	157736347	-	Abu_0076	-	hypothetical protein
77	 31.56	+1	87669..89138	-	489	157736348	-	Abu_0077	-	putative sulfide:quinone reductase
78	 22.55	-1	89219..89821	-	200	157736349	mobA	Abu_0078	-	molybdopterin-guanine dinucleotide biosynthesis protein
79	 32.40	+1	89821..91101	-	426	157736350	leuC	Abu_0079	-	3-isopropylmalate dehydratase large subunit
80	 28.17	0	91170..91634	-	154	157736351	lspA	Abu_0080	-	lipoprotein signal peptidase
81	 30.64	+1	91631..92965	-	444	157736352	glmM	Abu_0081	-	phosphoglucosamine mutase
82	 30.65	+1	93049..93309	+	86	157736353	rpsT	Abu_0082	-	30S ribosomal protein S20
83	 31.09	+1	93313..94380	+	355	157736354	prfA	Abu_0083	-	peptide chain release factor 1
84	 23.28	-1	94401..94589	+	62	157736355	-	Abu_0084	-	hypothetical protein
85	 28.69	0	94665..95720	+	351	157736356	pstS	Abu_0085	-	phosphate ABC transporter, periplasmic phosphate-binding protein
86	 23.40	-1	95790..97520	+	576	157736357	-	Abu_0086	-	EAL/GGDEF domain-containing protein
87	 31.35	+1	97552..98508	+	318	157736358	pstC	Abu_0087	-	phosphate ABC transporter, permease protein
88	 29.54	0	98505..99689	+	394	157736359	pstA	Abu_0088	-	phosphate ABC transporter, permease protein
89	 29.18	0	99705..100475	+	256	157736360	pstB	Abu_0089	-	phosphate transporter, ATP-binding protein
90	 24.81	0	100475..101143	+	222	157736361	-	Abu_0090	-	phosphate transport system regulatory protein PhoU, putative
91	 22.96	-1	101167..101571	+	134	157736362	-	Abu_0091	-	hypothetical protein
92	 25.37	0	101561..102238	+	225	157736363	-	Abu_0092	-	two-component response regulator
93	 23.74	0	102232..103617	+	461	157736364	-	Abu_0093	-	two-component sensor histidine kinase
94	 29.29	0	103693..104112	+	139	157736365	rplM	Abu_0094	-	50S ribosomal protein L13
95	 32.31	+1	104118..104507	+	129	157736366	rpsI	Abu_0095	-	30S ribosomal protein S9
96	 26.11	0	104560..106110	+	516	157736367	appA	Abu_0096	-	oligopeptide ABC transporter, periplasmic substrate-binding protein
97	 26.39	0	106120..106767	+	215	157736368	-	Abu_0097	-	hypothetical protein
98	 32.82	+1	107081..108052	+	323	157736369	-	Abu_0098	-	putative tricarboxylic transport protein TctC
99	 24.07	0	108089..108574	+	161	157736370	-	Abu_0099	-	putative tricarboxylic transport protein TctB
100	 32.67	+1	108571..110088	+	505	157736371	-	Abu_0100	-	putative tricarboxylic transport protein TctA
101	 24.08	0	110116..110796	+	226	157736372	-	Abu_0101	-	two-component response regulator
102	 22.05	-1	110786..112966	+	726	157736373	-	Abu_0102	-	two-component sensor histidine kinase
103	 26.76	0	113010..113663	+	217	157736374	cynT1	Abu_0103	-	carbonic anhydrase
104	 25.32	0	113656..114741	+	361	157736375	-	Abu_0104	-	putative ammonia monooxygenase
105	 20.38	-1	114718..115296	-	192	157736376	-	Abu_0105	-	hypothetical protein
106	 25.30	0	115293..116201	-	302	157736377	-	Abu_0106	-	ABC transporter, periplasmic substrate-binding protein, putative
107	 26.69	0	116201..116938	-	245	157736378	iamA	Abu_0107	-	ABC transporter, ATP-binding protein
108	 26.33	0	116939..118051	-	370	157736379	iamB	Abu_0108	-	ABC transporter, permease protein
109	 21.49	-1	118130..119041	-	303	157736380	-	Abu_0109	-	hypothetical protein
110	 22.29	-1	119034..120617	-	527	157736381	-	Abu_0110	-	hypothetical protein
111	 32.56	+1	120758..121273	+	171	157736382	luxS	Abu_0111	-	S-ribosylhomocysteinase
112	 26.98	0	121275..121715	+	146	157736383	-	Abu_0112	-	hypothetical protein
113	 23.87	0	121697..122467	+	256	157736384	-	Abu_0113	-	hypothetical protein
114	 26.76	0	122506..123327	+	273	157736385	dacA	Abu_0114	-	serine-type D-Ala-D-Ala carboxypeptidase
115	 25.95	0	123339..123839	-	166	157736386	-	Abu_0115	-	hypothetical protein
116	 27.66	0	123957..124397	+	146	157736387	-	Abu_0116	-	DoxX family protein
117	 31.52	+1	124421..127900	-	1159	157736388	metH	Abu_0117	-	5-methyltetrahydrofolate--homocysteine methyltransferase
118	 31.05	+1	128095..129015	+	306	157736389	ilvE	Abu_0118	-	branched-chain amino acid aminotransferase
119	 31.19	+1	129060..130133	+	357	157736390	-	Abu_0119	-	Band 7 family protein
120	 20.14	-1	130174..130461	+	95	157736391	-	Abu_0120	-	hypothetical protein
121	 28.49	0	130461..131141	+	226	157736392	hisI	Abu_0121	-	bifunctional phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP pyrophosphohydrolase
122	 27.91	0	131234..131491	+	85	157736393	-	Abu_0122	-	hypothetical protein
123	 32.15	+1	131527..132708	-	393	157736394	mrp	Abu_0123	-	ATP/GTP-binding protein
124	 33.26	+1	132775..134127	-	450	157736395	thiC	Abu_0124	-	thiamine biosynthesis protein ThiC
125	 22.30	-1	134273..135115	+	280	157736396	-	Abu_0125	-	hypothetical protein
126	 27.91	0	135154..136278	+	374	157736397	ispDF	Abu_0126	-	bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein
127	 23.59	0	136263..137165	+	300	157736398	-	Abu_0127	-	two-component response regulator
128	 28.93	0	137176..137652	+	158	157736399	pgpA	Abu_0128	-	phosphatidylglycerophosphatase A
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.