IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
689	 27.97	0	719789..721000	+	403	157736960	-	Abu_0709	-	ABC transporter, permease protein
690	 22.71	-1	721026..721505	-	159	157736961	-	Abu_0710	-	hypothetical protein
691	 30.40	0	721990..724101	-	703	157736962	-	Abu_0711	-	heavy metal translocating P-type ATPase
692	 28.10	0	724103..724465	-	120	157736963	-	Abu_0712	-	hypothetical protein
693	 29.91	0	724466..724816	-	116	157736964	-	Abu_0713	-	hypothetical protein
694	 27.06	0	724816..725070	-	84	157736965	-	Abu_0714	-	hypothetical protein
695	 27.51	0	725074..725760	-	228	157736966	-	Abu_0715	-	hypothetical protein
696	 26.67	0	725757..726071	-	104	157736967	-	Abu_0716	-	hypothetical protein
697	 23.50	0	726132..726599	-	155	157736968	fur1	Abu_0717	-	ferric uptake regulation protein
698	 22.39	-1	726750..727142	+	130	157736969	-	Abu_0718	-	hypothetical protein
699	 30.11	0	727165..728562	+	465	157736970	fumC	Abu_0719	-	fumarate hydratase, class II
700	 26.83	0	728584..728829	+	81	157736971	-	Abu_0720	-	hypothetical protein
701	 22.01	-1	728867..730720	-	617	157736972	-	Abu_0721	-	two-component sensor histidine kinase
702	 23.86	0	730704..731558	-	284	157736973	-	Abu_0722	-	two-component response regulator
703	 29.70	0	731681..733828	+	715	157736974	bfrE	Abu_0723	-	TonB-dependent receptor
704	 28.05	0	733912..734592	+	226	157736975	-	Abu_0724	-	hypothetical protein
705	 28.04	0	734589..735665	+	358	157736976	-	Abu_0725	-	FMN-dependent alpha-hydroxy acid dehydrogenase
706	 30.75	+1	735880..737970	+	696	157736977	irgA	Abu_0726	-	iron-regulated outer membrane virulence protein
707	 25.75	0	738049..738918	+	289	157736978	-	Abu_0727	-	IroE protein
708	 23.89	0	738931..740211	+	426	157736979	-	Abu_0728	-	putative SAM-dependent methyltransferase
709	 26.73	0	740310..740975	+	221	157736980	-	Abu_0729	-	hypothetical protein
710	 26.91	0	740987..742231	+	414	157736981	cysJ	Abu_0730	-	sulfite reductase, flavoprotein component
711	 28.28	0	742316..742513	-	65	157736982	-	Abu_0731	-	hypothetical protein
712	 33.52	+1	742516..744615	-	699	157736983	cstA	Abu_0732	-	carbon starvation protein A
713	 30.62	+1	744810..745913	+	367	157736984	-	Abu_0733	-	GTP-binding protein, putative
714	 25.33	0	745923..746747	+	274	157736985	-	Abu_0734	-	hypothetical protein
715	 25.08	0	746742..747359	-	205	157736986	-	Abu_0735	-	hypothetical protein
716	 24.31	0	747359..747613	-	84	157736987	-	Abu_0736	-	hypothetical protein
717	 28.25	0	747730..748044	+	104	157736988	-	Abu_0737	-	hypothetical protein
718	 25.78	0	748084..748785	-	233	157736989	-	Abu_0738	-	hypothetical protein
719	 24.64	0	748829..750220	-	463	157736990	-	Abu_0739	-	GGDEF/PAS domain-containing protein
720	 23.84	0	750338..751159	+	273	157736991	thiL	Abu_0740	-	thiamine monophosphate kinase
721	 26.10	0	751293..752357	+	354	157736992	truD	Abu_0741	-	tRNA pseudouridine synthase D
722	 26.84	0	752410..752763	+	117	157736993	-	Abu_0742	-	hypothetical protein
723	 27.45	0	752789..754981	-	730	157736994	-	Abu_0743	-	methyl-accepting chemotaxis protein
724	 27.06	0	755090..755647	+	185	157736995	ruvA	Abu_0744	-	Holliday junction DNA helicase motor protein
725	 25.29	0	755666..756709	+	347	157736996	ddlA	Abu_0745	-	D-alanyl-alanine synthetase A
726	 24.58	0	756712..757431	+	239	157736997	-	Abu_0746	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
727	 25.33	0	757418..758854	+	478	157736998	murF	Abu_0747	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
728	 29.24	0	758865..759353	+	162	157736999	-	Abu_0748	-	HIT family protein
729	 21.55	-1	759461..760453	+	330	157737000	-	Abu_0749	-	hypothetical protein
730	 17.53	-2	760564..761784	+	406	157737001	-	Abu_0750	-	hypothetical protein
731	 33.33	+1	761991..762305	+	104	157737002	rpsJ	Abu_0751	-	30S ribosomal protein S10
732	 33.51	+1	762324..762899	+	191	157737003	rplC	Abu_0752	-	50S ribosomal protein L3
733	 29.41	0	762896..763507	+	203	157737004	rplD	Abu_0753	-	50S ribosomal protein L4
734	 30.85	+1	763509..763790	+	93	157737005	rplW	Abu_0754	-	50S ribosomal protein L23
735	 34.06	+2	763801..764628	+	275	157737006	rplB	Abu_0755	-	50S ribosomal protein L2
736	 32.61	+1	764638..764913	+	91	157737007	rpsS	Abu_0756	-	30S ribosomal protein S19
737	 34.83	+2	764916..765248	+	110	157737008	rplV	Abu_0757	-	50S ribosomal protein L22
738	 33.19	+1	765248..765952	+	234	157737009	rpsC	Abu_0758	-	30S ribosomal protein S3
739	 34.74	+2	765955..766380	+	141	157737010	rplP	Abu_0759	-	50S ribosomal protein L16
740	 26.04	0	766367..766558	+	63	157737011	rpmC	Abu_0760	-	50S ribosomal protein L29
741	 28.97	0	766569..766820	+	83	157737012	rpsQ	Abu_0761	-	30S ribosomal protein S17
742	 33.06	+1	766820..767188	+	122	157737013	rplN	Abu_0762	-	50S ribosomal protein L14
743	 28.75	0	767188..767427	+	79	157737014	rplX	Abu_0763	-	50S ribosomal protein L24
744	 29.57	0	767420..767977	+	185	157737015	rplE	Abu_0764	-	50S ribosomal protein L5
745	 35.48	+2	767977..768162	+	61	157737016	rpsN	Abu_0765	-	30S ribosomal protein S14
746	 29.32	0	768175..768573	+	132	157737017	rpsH	Abu_0766	-	30S ribosomal protein S8
747	 33.52	+1	768583..769119	+	178	157737018	rplF	Abu_0767	-	50S ribosomal protein L6
748	 31.94	+1	769129..769488	+	119	157737019	rplR	Abu_0768	-	50S ribosomal protein L18
749	 34.92	+2	769498..769938	+	146	157737020	rpsE	Abu_0769	-	30S ribosomal protein S5
750	 30.83	+1	769942..770340	+	132	157737021	rplO	Abu_0770	-	50S ribosomal protein L15
751	 30.40	0	770343..771605	+	420	157737022	secY	Abu_0771	-	preprotein translocase subunit SecY
752	 31.63	+1	771607..772371	+	254	157737023	map	Abu_0772	-	methionine aminopeptidase
753	 31.51	+1	772381..772599	+	72	157737024	infA	Abu_0773	-	translation initiation factor IF-1
754	 22.87	-1	772688..773356	+	222	157737025	-	Abu_0774	-	hypothetical protein
755	 24.62	0	773353..774546	+	397	157737026	-	Abu_0775	-	hypothetical protein
756	 29.83	0	774590..776359	+	589	157737027	aspS	Abu_0776	-	aspartyl-tRNA synthetase
757	 24.56	0	776500..779085	+	861	157737028	-	Abu_0777	-	CheW-like chemotaxis protein
758	 31.40	+1	779146..780903	+	585	157737029	-	Abu_0778	-	radical SAM domain-containing protein
759	 32.09	+1	780939..781580	-	213	157737030	adk1	Abu_0779	-	adenylate kinase
760	 28.60	0	781710..782279	+	189	157737031	adk2	Abu_0780	-	adenylate kinase
761	 26.95	0	782279..783046	+	255	157737032	-	Abu_0781	-	molybdopterin binding domain-containing protein
762	 22.79	-1	783072..783716	+	214	157737033	cat	Abu_0782	-	chloramphenicol O-acetyltransferase
763	 27.38	0	783841..784983	+	380	157737034	-	Abu_0783	-	zinc-containing NADP-dependent alcohol dehydrogenase
764	 27.75	0	785021..786148	+	375	157737035	-	Abu_0784	-	iron-containing NADP-dependent alcohol dehydrogenase
765	 26.04	0	786197..788458	-	753	157737036	-	Abu_0785	-	methyl-accepting chemotaxis protein
766	 28.84	0	788583..789605	-	340	157737037	alr	Abu_0786	-	alanine racemase
767	 25.72	0	789608..791458	-	616	157737038	uvrC	Abu_0787	-	excinuclease ABC subunit C
768	 27.87	0	791614..794010	+	798	157737039	-	Abu_0788	-	methyl-accepting chemotaxis protein
769	 27.00	0	794444..796447	+	667	157737040	-	Abu_0789	-	methyl-accepting chemotaxis protein
770	 28.87	0	796489..798483	+	664	157737041	-	Abu_0790	-	methyl-accepting chemotaxis protein
771	 27.60	0	798834..800858	+	674	157737042	-	Abu_0791	-	methyl-accepting chemotaxis protein
772	 23.83	0	800866..801528	-	220	157737043	-	Abu_0792	-	two-component response regulator
773	 23.76	0	801525..802589	-	354	157737044	-	Abu_0793	-	two component system histidine kinase/response regulator fusion protein
774	 26.11	0	802655..804952	+	765	157737045	-	Abu_0794	-	two-component sensor histidine kinase
775	 30.17	0	804929..805339	-	136	157737046	-	Abu_0795	-	MutT/nudix family protein
776	 21.53	-1	805416..806186	-	256	157737047	-	Abu_0796	-	hypothetical protein
777	 23.69	0	806179..806541	-	120	157737048	-	Abu_0797	-	hypothetical protein
778	 22.13	-1	806534..806890	-	118	157737049	-	Abu_0798	-	hypothetical protein
779	 32.78	+1	806999..808273	+	424	157737050	-	Abu_0799	-	urea/short-chain amide ABC transporter, periplasmic urea/short-chain amide-binding protein
780	 28.22	0	808330..809934	+	534	157737051	-	Abu_0800	-	urea/short-chain amide ABC transporter, permease protein
781	 31.53	+1	809938..811044	+	368	157737052	-	Abu_0801	-	ABC transporter, permease protein
782	 32.19	+1	811046..811834	+	262	157737053	-	Abu_0802	-	ABC transporter, ATP-binding protein
783	 31.75	+1	811964..812659	+	231	157737054	-	Abu_0803	-	ABC transporter, ATP-binding protein
784	 18.99	-2	812786..813775	+	329	157737055	-	Abu_0804	-	hypothetical protein
785	 22.58	-1	813947..814699	+	250	157737056	ureD	Abu_0805	-	urease accessory protein UreD
786	 30.83	+1	814709..815386	+	225	157737057	ureAB	Abu_0806	-	fusion of urease beta and gamma subunits
787	 33.92	+1	815388..817088	+	566	157737058	ureC	Abu_0807	-	urease subunit alpha
788	 29.75	0	817098..817544	+	148	157737059	ureE	Abu_0808	-	urease accessory protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.