IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
630	 27.48	0	657251..658036	-	261	157736901	pdxJ	Abu_0650	-	pyridoxal phosphate biosynthetic protein PdxJ
631	 27.26	0	658046..659461	-	471	157736902	trpE	Abu_0651	-	anthranilate synthase, component I
632	 27.11	0	659472..660500	-	342	157736903	-	Abu_0652	-	hypothetical protein
633	 33.10	+1	660526..661788	-	420	157736904	glyA1	Abu_0653	-	serine hydroxymethyltransferase
634	 28.05	0	661802..663316	-	504	157736905	lysS	Abu_0654	-	lysyl-tRNA synthetase
635	 26.95	0	663329..664033	-	234	157736906	-	Abu_0655	-	colicin V production protein
636	 33.33	+1	664132..665193	+	353	157736907	ispG	Abu_0656	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
637	 22.66	-1	665193..666494	+	433	157736908	-	Abu_0657	-	GGDEF domain-containing protein
638	 29.66	0	666557..667999	+	480	157736909	dnaB	Abu_0658	-	replicative DNA helicase
639	 27.93	0	668065..669231	+	388	157736910	ugd	Abu_0659	-	UDP-glucose 6-dehydrogenase
640	 28.48	0	669242..670333	+	363	157736911	-	Abu_0660	-	NAD-dependent epimerase/dehydratase family protein
641	 29.72	0	670330..671574	+	414	157736912	-	Abu_0661	-	UDP-hexose dehydrogenase
642	 28.38	0	671577..672545	+	322	157736913	-	Abu_0662	-	hypothetical protein
643	 31.43	+1	672550..673128	+	192	157736914	-	Abu_0663	-	hypothetical protein
644	 30.67	+1	673131..674219	+	362	157736915	-	Abu_0664	-	DegT/DnrJ/EryC1/StrS aminotransferase
645	 25.78	0	674219..675397	+	392	157736916	-	Abu_0665	-	FAD-dependent oxidoreductase
646	 30.85	+1	675363..676370	+	335	157736917	-	Abu_0666	-	NAD-dependent epimerase/dehydratase family protein
647	 30.48	0	676375..677565	+	396	157736918	-	Abu_0667	-	DegT/DnrJ/EryC1/StrS aminotransferase
648	 27.48	0	677567..679564	+	665	157736919	asnB2	Abu_0668	-	asparagine synthetase
649	 28.16	0	679515..680075	+	186	157736920	-	Abu_0669	-	hypothetical protein
650	 28.39	0	680075..681247	+	390	157736921	wbpG1	Abu_0670	-	putative LPS biosynthesis protein WbpG
651	 28.16	0	681244..681861	+	205	157736922	hisH2	Abu_0671	-	imidazole glycerol phosphate synthase subunit HisH
652	 27.43	0	681864..682625	+	253	157736923	hisF2	Abu_0672	-	imidazoleglycerol phosphate synthase, cyclase subunit
653	 20.20	-1	682622..684136	+	504	157736924	-	Abu_0673	-	hypothetical protein
654	 21.94	-1	684136..685311	+	391	157736925	-	Abu_0674	-	hypothetical protein
655	 21.99	-1	685396..687096	+	566	157736926	-	Abu_0675	-	ABC transporter, ATP-binding/permease protein
656	 24.31	0	687100..689106	+	668	157736927	-	Abu_0676	-	putative O-antigen acyltransferase
657	 24.49	0	689103..690233	+	376	157736928	pglJ	Abu_0677	-	glycosyltransferase
658	 25.33	0	690221..692119	+	632	157736929	asnB	Abu_0678	-	asparagine synthetase
659	 23.76	0	692112..693218	+	368	157736930	-	Abu_0679	-	glycosyltransferase
660	 23.74	0	693277..694047	+	256	157736931	-	Abu_0680	-	hypothetical protein
661	 17.04	-2	694138..694272	+	44	157736932	-	Abu_0681	-	hypothetical protein
662	 23.97	0	694296..695534	+	412	157736933	-	Abu_0682	-	O-antigen translocase
663	 25.89	0	695534..696661	+	375	157736934	wbpG2	Abu_0683	-	putative LPS biosynthesis protein WbpG
664	 26.22	0	696658..697191	+	177	157736935	-	Abu_0684	-	hypothetical protein
665	 21.47	-1	697188..698333	+	381	157736936	-	Abu_0685	-	hypothetical protein
666	 21.70	-1	698326..699528	+	400	157736937	-	Abu_0686	-	hypothetical protein
667	 23.28	-1	699534..700697	+	387	157736938	-	Abu_0687	-	glycosyltransferase
668	 28.27	0	700687..701832	+	381	157736939	wbpG3	Abu_0688	-	putative LPS biosynthesis protein WbpG
669	 27.23	0	701841..702446	+	201	157736940	hisH3	Abu_0689	-	imidazole glycerol phosphate synthase subunit HisH
670	 27.37	0	702443..703213	+	256	157736941	hisF3	Abu_0690	-	imidazoleglycerol phosphate synthase, cyclase subunit
671	 29.28	0	703213..704322	+	369	157736942	-	Abu_0691	-	glycosyltransferase
672	 28.76	0	704319..705389	+	356	157736943	-	Abu_0692	-	putative hexose epimerase
673	 22.92	-1	705382..706380	+	332	157736944	-	Abu_0693	-	glycosyltransferase
674	 24.92	0	706377..707339	+	320	157736945	-	Abu_0694	-	glycosyltransferase
675	 25.83	0	707339..707911	+	190	157736946	-	Abu_0695	-	putative hexose epimerase
676	 25.70	0	707921..709663	+	580	157736947	pglF	Abu_0696	-	sugar epimerase/dehydratase
677	 26.32	0	709725..710123	+	132	157736948	-	Abu_0697	-	hypothetical protein
678	 23.51	0	710127..710981	-	284	157736949	ligA	Abu_0698	-	DNA ligase
679	 26.34	0	711046..711603	+	185	157736950	apt	Abu_0699	-	adenine phosphoribosyltransferase
680	 31.84	+1	711620..712828	+	402	157736951	trpB1	Abu_0700	-	tryptophan synthase subunit beta
681	 32.19	+1	712846..713547	+	233	157736952	-	Abu_0701	-	hypothetical protein
682	 28.31	0	713537..714949	+	470	157736953	pepA	Abu_0702	-	leucyl aminopeptidase
683	 28.51	0	714977..715660	-	227	157736954	-	Abu_0703	-	TonB-dependent receptor protein
684	 26.19	0	715668..716045	-	125	157736955	exbD2	Abu_0704	-	biopolymer transport protein ExbD
685	 26.57	0	716026..716454	-	142	157736956	exbB2	Abu_0705	-	biopolymer transport protein ExbB
686	 22.39	-1	716612..717826	+	404	157736957	-	Abu_0706	-	hypothetical protein
687	 27.79	0	717833..719095	+	420	157736958	-	Abu_0707	-	HlyD family secretion protein
688	 29.52	0	719082..719789	+	235	157736959	-	Abu_0708	-	ABC transporter, ATP-binding protein
689	 27.97	0	719789..721000	+	403	157736960	-	Abu_0709	-	ABC transporter, permease protein
690	 22.71	-1	721026..721505	-	159	157736961	-	Abu_0710	-	hypothetical protein
691	 30.40	0	721990..724101	-	703	157736962	-	Abu_0711	-	heavy metal translocating P-type ATPase
692	 28.10	0	724103..724465	-	120	157736963	-	Abu_0712	-	hypothetical protein
693	 29.91	0	724466..724816	-	116	157736964	-	Abu_0713	-	hypothetical protein
694	 27.06	0	724816..725070	-	84	157736965	-	Abu_0714	-	hypothetical protein
695	 27.51	0	725074..725760	-	228	157736966	-	Abu_0715	-	hypothetical protein
696	 26.67	0	725757..726071	-	104	157736967	-	Abu_0716	-	hypothetical protein
697	 23.50	0	726132..726599	-	155	157736968	fur1	Abu_0717	-	ferric uptake regulation protein
698	 22.39	-1	726750..727142	+	130	157736969	-	Abu_0718	-	hypothetical protein
699	 30.11	0	727165..728562	+	465	157736970	fumC	Abu_0719	-	fumarate hydratase, class II
700	 26.83	0	728584..728829	+	81	157736971	-	Abu_0720	-	hypothetical protein
701	 22.01	-1	728867..730720	-	617	157736972	-	Abu_0721	-	two-component sensor histidine kinase
702	 23.86	0	730704..731558	-	284	157736973	-	Abu_0722	-	two-component response regulator
703	 29.70	0	731681..733828	+	715	157736974	bfrE	Abu_0723	-	TonB-dependent receptor
704	 28.05	0	733912..734592	+	226	157736975	-	Abu_0724	-	hypothetical protein
705	 28.04	0	734589..735665	+	358	157736976	-	Abu_0725	-	FMN-dependent alpha-hydroxy acid dehydrogenase
706	 30.75	+1	735880..737970	+	696	157736977	irgA	Abu_0726	-	iron-regulated outer membrane virulence protein
707	 25.75	0	738049..738918	+	289	157736978	-	Abu_0727	-	IroE protein
708	 23.89	0	738931..740211	+	426	157736979	-	Abu_0728	-	putative SAM-dependent methyltransferase
709	 26.73	0	740310..740975	+	221	157736980	-	Abu_0729	-	hypothetical protein
710	 26.91	0	740987..742231	+	414	157736981	cysJ	Abu_0730	-	sulfite reductase, flavoprotein component
711	 28.28	0	742316..742513	-	65	157736982	-	Abu_0731	-	hypothetical protein
712	 33.52	+1	742516..744615	-	699	157736983	cstA	Abu_0732	-	carbon starvation protein A
713	 30.62	+1	744810..745913	+	367	157736984	-	Abu_0733	-	GTP-binding protein, putative
714	 25.33	0	745923..746747	+	274	157736985	-	Abu_0734	-	hypothetical protein
715	 25.08	0	746742..747359	-	205	157736986	-	Abu_0735	-	hypothetical protein
716	 24.31	0	747359..747613	-	84	157736987	-	Abu_0736	-	hypothetical protein
717	 28.25	0	747730..748044	+	104	157736988	-	Abu_0737	-	hypothetical protein
718	 25.78	0	748084..748785	-	233	157736989	-	Abu_0738	-	hypothetical protein
719	 24.64	0	748829..750220	-	463	157736990	-	Abu_0739	-	GGDEF/PAS domain-containing protein
720	 23.84	0	750338..751159	+	273	157736991	thiL	Abu_0740	-	thiamine monophosphate kinase
721	 26.10	0	751293..752357	+	354	157736992	truD	Abu_0741	-	tRNA pseudouridine synthase D
722	 26.84	0	752410..752763	+	117	157736993	-	Abu_0742	-	hypothetical protein
723	 27.45	0	752789..754981	-	730	157736994	-	Abu_0743	-	methyl-accepting chemotaxis protein
724	 27.06	0	755090..755647	+	185	157736995	ruvA	Abu_0744	-	Holliday junction DNA helicase motor protein
725	 25.29	0	755666..756709	+	347	157736996	ddlA	Abu_0745	-	D-alanyl-alanine synthetase A
726	 24.58	0	756712..757431	+	239	157736997	-	Abu_0746	-	2-hydroxy-6-oxohepta-2,4-dienoate hydrolase
727	 25.33	0	757418..758854	+	478	157736998	murF	Abu_0747	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase
728	 29.24	0	758865..759353	+	162	157736999	-	Abu_0748	-	HIT family protein
729	 21.55	-1	759461..760453	+	330	157737000	-	Abu_0749	-	hypothetical protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.