IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
544	 21.34	-1	565939..566505	+	188	157736815	-	Abu_0562	-	hypothetical protein
545	 27.66	0	566755..568800	+	681	157736816	rep	Abu_0563	-	ATP-dependent DNA helicase UvrD
546	 25.65	0	568847..570004	+	385	157736817	-	Abu_0564	-	sodium/hydrogen antiporter
547	 33.48	+1	570246..571580	+	444	157736818	soxC	Abu_0565	-	sulfur oxidation protein SoxCD, sulfur dehydrogenase subunit
548	 31.65	+1	571549..572733	+	394	157736819	soxD	Abu_0566	-	sulfur oxidation protein SoxCD, diheme cytochrome c subunit
549	 32.20	+1	572748..573101	+	117	157736820	soxX	Abu_0567	-	sulfur oxidation protein SoxXA, monoheme cytochrome c subunit
550	 33.55	+1	573117..573569	+	150	157736821	soxY	Abu_0568	-	sulfur oxidation protein SoxYZ, sulfur covalently binding protein
551	 30.39	0	573627..573932	+	101	157736822	soxZ	Abu_0569	-	sulfur oxidation protein SoxYZ, sulfur compound chelating protein
552	 29.95	0	573970..574884	+	304	157736823	soxA	Abu_0570	-	sulfur oxidation protein SoxXA, diheme cytochrome c subunit
553	 31.90	+1	574898..575317	+	139	157736824	-	Abu_0571	-	hypothetical protein
554	 30.84	+1	575449..577215	+	588	157736825	soxB	Abu_0572	-	sulfur oxidation protein, sulfate thiol esterase
555	 21.38	-1	577302..578096	+	264	157736826	-	Abu_0573	-	hypothetical protein
556	 26.44	0	578093..578527	+	144	157736827	-	Abu_0574	-	hypothetical protein
557	 27.66	0	578531..578971	+	146	157736828	-	Abu_0575	-	hypothetical protein
558	 28.66	0	578989..579780	+	263	157736829	-	Abu_0576	-	hypothetical protein
559	 31.39	+1	579811..580377	-	188	157736830	pfpI	Abu_0577	-	peptidase, ThiJ/PfpI family protein
560	 26.69	0	580452..581369	-	305	157736831	-	Abu_0578	-	beta-lactamase-like protein
561	 21.37	-1	581459..582511	+	350	157736832	-	Abu_0579	-	hypothetical protein
562	 30.67	+1	582535..583209	-	224	157736833	-	Abu_0580	-	rhodanese-like protein
563	 32.11	+1	583395..586010	+	871	157736834	valS	Abu_0581	-	valyl-tRNA synthetase
564	 22.47	-1	586038..586856	+	272	157736835	-	Abu_0582	-	hypothetical protein
565	 30.26	0	587017..587211	+	64	157736836	-	Abu_0583	-	hypothetical protein
566	 23.27	-1	587249..588103	-	284	157736837	-	Abu_0584	-	hypothetical protein
567	 29.22	0	588110..589423	-	437	157736838	-	Abu_0585	-	major facilitator superfamily transporter
568	 28.33	0	589501..590100	+	199	157736839	-	Abu_0586	-	HAM1-like protein
569	 20.87	-1	590090..590410	-	106	157736840	-	Abu_0587	-	hypothetical protein
570	 18.42	-2	590407..590748	-	113	157736841	-	Abu_0588	-	hypothetical protein
571	 19.79	-2	590738..591025	-	95	157736842	-	Abu_0589	-	hypothetical protein
572	 33.07	+1	591012..591776	-	254	157736843	proC	Abu_0590	-	pyrroline-5-carboxylate reductase
573	 28.49	0	591846..592526	+	226	157736844	-	Abu_0591	-	hypothetical protein
574	 27.71	0	592569..594986	+	805	157736845	lon	Abu_0592	-	ATP-dependent protease La
575	 26.24	0	594990..595553	+	187	157736846	-	Abu_0593	-	rhomboid-like protein
576	 29.19	0	595550..596008	+	152	157736847	-	Abu_0594	-	protein tyrosine phosphatase
577	 23.41	-1	596048..597337	+	429	157736848	-	Abu_0595	-	hypothetical protein
578	 23.41	-1	597340..599022	+	560	157736849	-	Abu_0596	-	TPR repeat-containing protein
579	 26.62	0	599075..599506	-	143	157736850	-	Abu_0597	-	MarR family transcriptional regulator
580	 26.23	0	599645..599968	+	107	157736851	-	Abu_0598	-	hypothetical protein
581	 22.49	-1	600032..600280	-	82	157736852	-	Abu_0599	-	hypothetical protein
582	 27.16	0	602083..603621	-	512	157736853	-	Abu_0602	-	methyl-accepting chemotaxis protein
583	 25.33	0	603754..603978	+	74	157736854	-	Abu_0603	-	hypothetical protein
584	 22.91	-1	604006..604878	+	290	157736855	-	Abu_0604	-	hypothetical protein
585	 31.96	+1	605069..606520	-	483	157736856	accC2	Abu_0605	-	acetyl CoA carboxylase, biotin carboxylase subunit
586	 29.94	0	606769..607122	-	117	157736857	-	Abu_0606	-	hypothetical protein
587	 25.55	0	607132..607542	-	136	157736858	sufE	Abu_0607	-	putative SUF regulatory protein
588	 28.61	0	607544..608728	-	394	157736859	sufS	Abu_0608	-	selenocysteine lyase/cysteine desulfurase
589	 22.58	-1	608721..609752	-	343	157736860	sufD	Abu_0609	-	Fe-S assembly protein
590	 26.85	0	609739..610509	-	256	157736861	sufC	Abu_0610	-	Fe-S assembly ABC transporter, ATP-binding protein
591	 30.34	0	610513..611982	-	489	157736862	sufB	Abu_0611	-	Fe-S assembly ABC transporter, permease protein
592	 31.91	+1	612179..613375	+	398	157736863	iscS	Abu_0612	-	cysteine desulfurase/aminotransferase (IscS/NifS)
593	 30.68	+1	613406..614386	+	326	157736864	iscU	Abu_0613	-	NifU-like protein
594	 26.44	0	614517..615140	+	207	157736865	-	Abu_0614	-	hypothetical protein
595	 23.00	-1	615142..616389	-	415	157736866	-	Abu_0615	-	GGDEF domain-containing protein
596	 27.91	0	616464..617864	+	466	157736867	argH	Abu_0616	-	argininosuccinate lyase
597	 30.69	+1	617884..618792	-	302	157736868	cheV	Abu_0617	-	chemotaxis signal transduction protein CheV
598	 27.27	0	618843..619502	-	219	157736869	-	Abu_0618	-	MoeB/ThiF family protein
599	 32.10	+1	619565..620050	+	161	157736870	greA	Abu_0619	-	transcription elongation factor GreA
600	 19.46	-2	620063..620761	+	232	157736871	-	Abu_0620	-	hypothetical protein
601	 29.69	0	620773..622746	+	657	157736872	uvrB	Abu_0621	-	excinuclease ABC subunit B
602	 25.96	0	622837..624720	+	627	157736873	-	Abu_0622	-	methyl-accepting chemotaxis protein
603	 28.37	0	624727..625371	-	214	157736874	nth	Abu_0623	-	endonuclease III
604	 19.71	-2	625368..625778	-	136	157736875	-	Abu_0624	-	hypothetical protein
605	 28.39	0	625939..627921	+	660	157736876	-	Abu_0625	-	TonB-dependent receptor protein
606	 30.00	0	628024..630180	+	718	157736877	-	Abu_0626	-	TonB-dependent receptor protein
607	 26.01	0	630232..631623	-	463	157736878	-	Abu_0627	-	methyl-accepting chemotaxis protein
608	 19.95	-2	631716..632813	-	365	157736879	-	Abu_0628	-	hypothetical protein
609	 19.35	-2	633356..633541	+	61	157736880	-	Abu_0629	-	hypothetical protein
610	 22.80	-1	633654..634346	+	230	157736881	-	Abu_0630	-	two-component response regulator
611	 20.96	-1	634351..637332	+	993	157736882	-	Abu_0631	-	two-component sensor histidine kinase
612	 26.87	0	637521..639824	+	767	157736883	-	Abu_0632	-	methyl-accepting chemotaxis protein
613	 27.20	0	639938..641944	+	668	157736884	-	Abu_0633	-	methyl-accepting chemotaxis protein
614	 25.93	0	641969..643198	-	409	157736885	-	Abu_0634	-	hypothetical protein
615	 33.99	+2	643460..643915	-	151	157736886	rpiB	Abu_0635	-	ribose-5-phosphate isomerase B
616	 30.78	+1	643915..644697	-	260	157736887	lepP	Abu_0636	-	signal peptidase I
617	 30.90	+1	644691..645554	-	287	157736888	folD	Abu_0637	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
618	 28.86	0	645702..646238	+	178	157736889	rplY	Abu_0638	-	50S ribosomal protein L25/general stress protein Ctc
619	 25.91	0	646247..646798	+	183	157736890	pth	Abu_0639	-	peptidyl-tRNA hydrolase
620	 21.82	-1	646801..647868	+	355	157736891	-	Abu_0640	-	hypothetical protein
621	 25.95	0	647882..648328	+	148	157736892	-	Abu_0641	-	hypothetical protein
622	 27.52	0	648291..649751	-	486	157736893	amiA	Abu_0642	-	N-acetylmuramoyl-L-alanine amidase
623	 32.36	+1	649757..650788	-	343	157736894	npd	Abu_0643	-	2-nitropropane dioxygenase
624	 27.46	0	650849..652057	-	402	157736895	tyrS	Abu_0644	-	tyrosyl-tRNA synthetase
625	 26.90	0	652076..654220	-	714	157736896	spoT	Abu_0645	-	bifunctional ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
626	 27.85	0	654254..654472	-	72	157736897	rpoZ	Abu_0646	-	DNA-directed RNA polymerase, omega chain
627	 33.05	+1	654495..655202	-	235	157736898	pyrH	Abu_0647	-	uridylate kinase
628	 20.69	-1	655259..656326	-	355	157736899	-	Abu_0648	-	hypothetical protein
629	 25.32	0	656323..657258	-	311	157736900	pdxA	Abu_0649	-	4-hydroxythreonine-4-phosphate dehydrogenase
630	 27.48	0	657251..658036	-	261	157736901	pdxJ	Abu_0650	-	pyridoxal phosphate biosynthetic protein PdxJ
631	 27.26	0	658046..659461	-	471	157736902	trpE	Abu_0651	-	anthranilate synthase, component I
632	 27.11	0	659472..660500	-	342	157736903	-	Abu_0652	-	hypothetical protein
633	 33.10	+1	660526..661788	-	420	157736904	glyA1	Abu_0653	-	serine hydroxymethyltransferase
634	 28.05	0	661802..663316	-	504	157736905	lysS	Abu_0654	-	lysyl-tRNA synthetase
635	 26.95	0	663329..664033	-	234	157736906	-	Abu_0655	-	colicin V production protein
636	 33.33	+1	664132..665193	+	353	157736907	ispG	Abu_0656	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
637	 22.66	-1	665193..666494	+	433	157736908	-	Abu_0657	-	GGDEF domain-containing protein
638	 29.66	0	666557..667999	+	480	157736909	dnaB	Abu_0658	-	replicative DNA helicase
639	 27.93	0	668065..669231	+	388	157736910	ugd	Abu_0659	-	UDP-glucose 6-dehydrogenase
640	 28.48	0	669242..670333	+	363	157736911	-	Abu_0660	-	NAD-dependent epimerase/dehydratase family protein
641	 29.72	0	670330..671574	+	414	157736912	-	Abu_0661	-	UDP-hexose dehydrogenase
642	 28.38	0	671577..672545	+	322	157736913	-	Abu_0662	-	hypothetical protein
643	 31.43	+1	672550..673128	+	192	157736914	-	Abu_0663	-	hypothetical protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.