IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
465	 29.72	0	482014..482622	-	202	157736736	hisH1	Abu_0475	-	glutamine amidotransferase HisH
466	 26.53	0	482665..483237	-	190	157736737	ctsW	Abu_0476	-	transformation system protein
467	 25.74	0	483387..483794	+	135	157736738	-	Abu_0477	-	hypothetical protein
468	 31.21	+1	483936..485723	-	595	157736739	lepA	Abu_0478	-	GTP-binding protein LepA
469	 26.59	0	485898..486164	+	88	157736740	-	Abu_0479	-	hypothetical protein
470	 27.62	0	486176..488695	+	839	157736741	-	Abu_0480	-	heavy-metal transporting P-type ATPase
471	 31.56	+1	488761..489777	-	338	157736742	cadF	Abu_0481	-	outer membrane fibronectin-binding protein
472	 31.51	+1	489857..490789	-	310	157736743	prsA	Abu_0482	-	ribose-phosphate pyrophosphokinase
473	 30.80	+1	491053..492234	+	393	157736744	-	Abu_0483	-	hypothetical protein
474	 29.67	0	492280..493317	-	345	157736745	trmU1	Abu_0484	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
475	 31.43	+1	493329..494432	-	367	157736746	trmU2	Abu_0485	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
476	 26.13	0	494480..494965	-	161	157736747	folK	Abu_0486	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
477	 25.73	0	494996..496021	-	341	157736748	pepQ	Abu_0487	-	prolidase (Xaa-Pro dipeptidase) (pepQ)
478	 30.30	0	496099..496593	+	164	157736749	aroQ	Abu_0488	-	3-dehydroquinate dehydratase
479	 27.24	0	496541..497821	+	426	157736750	-	Abu_0489	-	chlorohydrolase
480	 30.06	0	497814..498698	+	294	157736751	pspA	Abu_0490	-	protease IV (PspA)
481	 19.61	-2	498781..499443	-	220	157736752	-	Abu_0491	-	hypothetical protein
482	 32.84	+1	499680..500894	-	404	157736753	ackA1	Abu_0492	-	acetate kinase
483	 32.93	+1	500921..501916	-	331	157736754	pta	Abu_0493	-	phosphate acetyltransferase
484	 28.80	0	502160..503350	-	396	157736755	ackA2	Abu_0494	-	acetate kinase
485	 28.86	0	503454..504392	-	312	157736756	-	Abu_0495	-	cation efflux protein
486	 28.72	0	504450..505640	-	396	157736757	ackA3	Abu_0496	-	acetate kinase
487	 24.14	0	505661..506269	-	202	157736758	dnaQ1	Abu_0497	-	DNA polymerase III, epsilon subunit
488	 24.21	0	506262..508103	-	613	157736759	-	Abu_0498	-	hypothetical protein
489	 33.03	+1	508154..509821	-	555	157736760	-	Abu_0499	-	sodium:solute symporter family protein
490	 25.40	0	509821..510135	-	104	157736761	-	Abu_0500	-	hypothetical protein
491	 34.67	+2	510362..512011	-	549	157736762	-	Abu_0501	-	sodium:solute symporter family protein
492	 27.37	0	512011..512379	-	122	157736763	-	Abu_0502	-	hypothetical protein
493	 23.53	0	512451..513062	-	203	157736764	dnaQ2	Abu_0503	-	DNA polymerase III, epsilon subunit
494	 25.15	0	513062..514882	-	606	157736765	-	Abu_0504	-	cyclic nucleotide-binding domain-containing protein
495	 26.05	0	514902..516671	-	589	157736766	-	Abu_0505	-	sodium/solute symporter family protein
496	 26.27	0	516677..516931	-	84	157736767	-	Abu_0506	-	hypothetical protein
497	 24.43	0	517007..517669	-	220	157736768	-	Abu_0507	-	two-component response regulator
498	 20.77	-1	517650..519233	-	527	157736769	-	Abu_0508	-	two-component sensor histidine kinase
499	 27.42	0	520163..520669	-	168	157736770	-	Abu_0517	-	CinA-like protein
500	 30.02	0	520766..522124	-	452	157736771	mqo	Abu_0518	-	malate:quinone oxidoreductase
501	 28.91	0	522392..525151	+	919	157736772	ileS	Abu_0519	-	isoleucyl-tRNA synthetase
502	 31.90	+1	525275..525553	+	92	157736773	-	Abu_0520	-	NifU-like protein
503	 23.12	-1	525556..526152	+	198	157736774	-	Abu_0521	-	hypothetical protein
504	 25.81	0	526130..527419	+	429	157736775	murE	Abu_0522	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
505	 24.44	0	527751..528728	+	325	157736776	-	Abu_0523	-	C4-dicarboxylate transporter/malic acid transport protein
506	 29.12	0	528768..529787	+	339	157736777	tas	Abu_0524	-	aldo/keto reductase family oxidoreductase TAS
507	 30.31	0	529857..531344	+	495	157736778	pitA	Abu_0525	-	phosphate transporter family protein
508	 26.18	0	531631..534174	+	847	157736779	-	Abu_0526	-	methyl-accepting chemotaxis protein
509	 26.12	0	534237..534638	-	133	157736780	-	Abu_0527	-	hypothetical protein
510	 27.29	0	534781..536682	-	633	157736781	-	Abu_0528	-	methyl-accepting chemotaxis protein
511	 27.82	0	536838..537200	+	120	157736782	-	Abu_0529	-	hypothetical protein
512	 24.20	0	537210..537680	+	156	157736783	-	Abu_0530	-	hypothetical protein
513	 24.98	0	537720..538940	+	406	157736784	-	Abu_0531	-	M48 family peptidase
514	 24.75	0	538937..540136	+	399	157736785	-	Abu_0532	-	DNA recombination protein RmuC-like protein
515	 23.56	0	540149..541048	-	299	157736786	-	Abu_0533	-	integral membrane domain-containing protein
516	 27.44	0	541048..542268	-	406	157736787	moeA2	Abu_0534	-	molybdenum cofactor biosynthesis protein A
517	 23.74	0	542279..542476	-	65	157736788	-	Abu_0535	-	hypothetical protein
518	 28.75	0	542584..543369	+	261	157736789	-	Abu_0536	-	hypothetical protein
519	 25.35	0	543366..543866	+	166	157736790	-	Abu_0537	-	hypothetical protein
520	 31.67	+1	543869..544108	-	79	157736791	-	Abu_0538	-	hypothetical protein
521	 28.92	0	544092..544589	-	165	157736792	-	Abu_0539	-	hypothetical protein
522	 31.95	+1	544832..545629	+	265	157736793	rpsB	Abu_0540	-	30S ribosomal protein S2
523	 31.81	+1	545629..546675	+	348	157736794	tsf	Abu_0541	-	elongation factor Ts
524	 25.99	0	546721..547401	+	226	157736795	-	Abu_0542	-	ABC transporter, ATP-binding protein
525	 24.70	0	547398..548219	+	273	157736796	-	Abu_0543	-	hypothetical protein
526	 26.05	0	548216..548833	+	205	157736797	gmk	Abu_0544	-	guanylate kinase
527	 23.49	0	548834..550459	-	541	157736798	-	Abu_0545	-	EAL/GGDEF domain-containing protein
528	 27.35	0	550556..552994	+	812	157736799	-	Abu_0546	-	cation-transporting ATPase, P-type
529	 28.51	0	553011..553238	+	75	157736800	-	Abu_0547	-	hypothetical protein
530	 36.43	+2	553268..553558	-	96	157736801	-	Abu_0548	-	cytochrome c-553
531	 25.37	0	553758..554360	+	200	157736802	-	Abu_0549	-	oligopeptide ABC transporter, ATP-binding protein
532	 24.62	0	554347..555276	+	309	157736803	hemH	Abu_0550	-	ferrochelatase
533	 26.32	0	555304..557412	-	702	157736804	feoB1	Abu_0551	-	ferrous iron transport protein B
534	 23.68	0	557402..557629	-	75	157736805	-	Abu_0552	-	hypothetical protein
535	 25.57	0	557827..558573	+	248	157736806	-	Abu_0553	-	hypothetical protein
536	 27.26	0	558630..559370	+	246	157736807	-	Abu_0554	-	ABC transporter, ATP-binding protein
537	 28.96	0	559384..560184	+	266	157736808	-	Abu_0555	-	ABC transporter, permease protein
538	 23.64	0	560208..561032	+	274	157736809	-	Abu_0556	-	hypothetical protein
539	 33.15	+1	561113..561652	+	179	157736810	tpx	Abu_0557	-	thiol peroxidase
540	 28.94	0	561764..562492	+	242	157736811	-	Abu_0558	-	hypothetical protein
541	 25.15	0	562512..563489	-	325	157736812	-	Abu_0559	-	efflux protein bile acid:sodium symporter family protein
542	 23.17	-1	563572..564762	+	396	157736813	-	Abu_0560	-	hypothetical protein
543	 28.26	0	565013..565939	+	308	157736814	-	Abu_0561	-	putative sulfite oxidase subunit YedY
544	 21.34	-1	565939..566505	+	188	157736815	-	Abu_0562	-	hypothetical protein
545	 27.66	0	566755..568800	+	681	157736816	rep	Abu_0563	-	ATP-dependent DNA helicase UvrD
546	 25.65	0	568847..570004	+	385	157736817	-	Abu_0564	-	sodium/hydrogen antiporter
547	 33.48	+1	570246..571580	+	444	157736818	soxC	Abu_0565	-	sulfur oxidation protein SoxCD, sulfur dehydrogenase subunit
548	 31.65	+1	571549..572733	+	394	157736819	soxD	Abu_0566	-	sulfur oxidation protein SoxCD, diheme cytochrome c subunit
549	 32.20	+1	572748..573101	+	117	157736820	soxX	Abu_0567	-	sulfur oxidation protein SoxXA, monoheme cytochrome c subunit
550	 33.55	+1	573117..573569	+	150	157736821	soxY	Abu_0568	-	sulfur oxidation protein SoxYZ, sulfur covalently binding protein
551	 30.39	0	573627..573932	+	101	157736822	soxZ	Abu_0569	-	sulfur oxidation protein SoxYZ, sulfur compound chelating protein
552	 29.95	0	573970..574884	+	304	157736823	soxA	Abu_0570	-	sulfur oxidation protein SoxXA, diheme cytochrome c subunit
553	 31.90	+1	574898..575317	+	139	157736824	-	Abu_0571	-	hypothetical protein
554	 30.84	+1	575449..577215	+	588	157736825	soxB	Abu_0572	-	sulfur oxidation protein, sulfate thiol esterase
555	 21.38	-1	577302..578096	+	264	157736826	-	Abu_0573	-	hypothetical protein
556	 26.44	0	578093..578527	+	144	157736827	-	Abu_0574	-	hypothetical protein
557	 27.66	0	578531..578971	+	146	157736828	-	Abu_0575	-	hypothetical protein
558	 28.66	0	578989..579780	+	263	157736829	-	Abu_0576	-	hypothetical protein
559	 31.39	+1	579811..580377	-	188	157736830	pfpI	Abu_0577	-	peptidase, ThiJ/PfpI family protein
560	 26.69	0	580452..581369	-	305	157736831	-	Abu_0578	-	beta-lactamase-like protein
561	 21.37	-1	581459..582511	+	350	157736832	-	Abu_0579	-	hypothetical protein
562	 30.67	+1	582535..583209	-	224	157736833	-	Abu_0580	-	rhodanese-like protein
563	 32.11	+1	583395..586010	+	871	157736834	valS	Abu_0581	-	valyl-tRNA synthetase
564	 22.47	-1	586038..586856	+	272	157736835	-	Abu_0582	-	hypothetical protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.