IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
398	 22.22	-1	409281..409658	-	125	157736669	-	Abu_0408	-	hypothetical protein
399	 24.51	0	409789..410094	+	101	157736670	-	Abu_0409	-	hypothetical protein
400	 28.71	0	410094..413081	+	995	157736671	mfd	Abu_0410	-	transcription-repair coupling factor
401	 27.36	0	413093..413611	+	172	157736672	-	Abu_0411	-	putative acetyltransferase
402	 24.73	0	413608..414549	-	313	157736673	-	Abu_0412	-	hypothetical protein
403	 25.50	0	414654..415100	+	148	157736674	-	Abu_0413	-	putative periplasmic protein
404	 26.28	0	415134..415814	+	226	157736675	ompR	Abu_0414	-	two-component response regulator
405	 20.63	-1	415811..417046	+	411	157736676	-	Abu_0415	-	two-component sensor histidine kinase
406	 26.11	0	417092..418198	+	368	157736677	-	Abu_0416	-	hypothetical protein
407	 26.75	0	418249..419661	+	470	157736678	-	Abu_0417	-	methyl-accepting chemotaxis protein
408	 25.66	0	419654..420031	+	125	157736679	-	Abu_0418	-	two-component response regulator
409	 19.58	-2	420032..422074	+	680	157736680	-	Abu_0419	-	two-component sensor histidine kinase
410	 21.45	-1	422071..424494	+	807	157736681	-	Abu_0420	-	two-component sensor histidine kinase
411	 27.92	0	424495..425307	+	270	157736682	-	Abu_0421	-	hypothetical protein
412	 27.04	0	425354..426148	+	264	157736683	-	Abu_0422	-	hypothetical protein
413	 26.10	0	426145..426393	+	82	157736684	-	Abu_0423	-	hypothetical protein
414	 26.16	0	426531..427241	+	236	157736685	ubiE	Abu_0424	-	ubiquinone/menaquinone biosynthesis methyltransferase
415	 26.01	0	427266..428453	+	395	157736686	xseA	Abu_0425	-	exodeoxyribonuclease VII large subunit
416	 30.00	0	428527..429006	+	159	157736687	cheW	Abu_0426	-	chemotaxis protein CheW
417	 27.90	0	429034..429567	-	177	157736688	-	Abu_0427	-	peptidyl-prolyl cis-trans isomerase-like protein
418	 29.17	0	429721..430104	+	127	157736689	panD	Abu_0428	-	aspartate alpha-decarboxylase
419	 28.04	0	430097..430417	+	106	157736690	-	Abu_0429	-	hypothetical protein
420	 26.95	0	430422..431282	+	286	157736691	ispA	Abu_0430	-	geranyltranstransferase
421	 29.46	0	431419..431676	+	85	157736692	groES	Abu_0431	-	10 kDa chaperonin
422	 32.78	+1	431676..433310	+	544	157736693	groEL	Abu_0432	-	chaperonin GroEL
423	 23.09	-1	433660..435036	-	458	157736694	-	Abu_0433	-	two-component sensor histidine kinase
424	 24.78	0	435026..435703	-	225	157736695	-	Abu_0434	-	two-component response regulator
425	 22.81	-1	435700..436431	-	243	157736696	-	Abu_0435	-	Ser/Thr protein phosphatase family protein
426	 22.81	-1	436428..436883	-	151	157736697	-	Abu_0436	-	hypothetical protein
427	 24.38	0	436887..437411	-	174	157736698	-	Abu_0437	-	putative periplasmic protein
428	 25.57	0	437404..438369	-	321	157736699	-	Abu_0438	-	hypothetical protein
429	 25.13	0	438357..439928	-	523	157736700	-	Abu_0439	-	hypothetical protein
430	 25.00	0	439912..440535	-	207	157736701	-	Abu_0440	-	ABC transporter, ATP-binding protein
431	 25.12	0	440532..441614	-	360	157736702	-	Abu_0441	-	ABC transporter, permease protein
432	 23.13	-1	441706..442293	-	195	157736703	-	Abu_0442	-	hypothetical protein
433	 25.71	0	442328..443101	+	257	157736704	suhB	Abu_0443	-	inositol-1-monophosphatase
434	 28.79	0	443151..444953	+	600	157736705	glmS	Abu_0444	-	D-fructose-6-phosphate amidotransferase
435	 32.30	+1	445082..446341	+	419	157736706	metK	Abu_0445	-	S-adenosylmethionine synthetase
436	 31.13	+1	446443..447306	+	287	157736707	accD	Abu_0446	-	acetyl-CoA carboxylase subunit beta
437	 23.69	0	447310..447921	+	203	157736708	thiE	Abu_0447	-	thiamine-phosphate pyrophosphorylase
438	 26.04	0	447887..448366	+	159	157736709	-	Abu_0448	-	hypothetical protein
439	 23.51	0	448426..449433	+	335	157736710	-	Abu_0449	-	hypothetical protein
440	 30.54	+1	449434..450363	+	309	157736711	-	Abu_0450	-	tRNA-dihydrouridine synthase
441	 26.50	0	450445..451263	+	272	157736712	prmA	Abu_0451	-	ribosomal protein L11 methyltransferase
442	 31.22	+1	451268..453253	+	661	157736713	ftsH1	Abu_0452	-	cell division protein FtsH
443	 25.29	0	453372..455198	+	608	157736714	-	Abu_0453	-	two-component response regulator
444	 22.55	-1	455185..455592	+	135	157736715	-	Abu_0454	-	two-component response regulator
445	 24.79	0	455594..458167	+	857	157736716	-	Abu_0455	-	two-component sensor histidine kinase
446	 31.85	+1	458444..459997	+	517	157736717	leuA1	Abu_0456	-	2-isopropylmalate synthase
447	 24.32	0	460037..460369	+	110	157736718	-	Abu_0457	-	hypothetical protein
448	 28.33	0	460366..460785	+	139	157736719	-	Abu_0458	-	hypothetical protein
449	 26.62	0	460764..463742	+	992	157736720	mutS1	Abu_0459	-	mismatch repair ATPase
450	 26.76	0	463782..466808	-	1008	157736721	-	Abu_0460	-	outer membrane component of efflux system
451	 23.23	-1	466810..467502	-	230	157736722	-	Abu_0461	-	putative membrane fusion component of efflux system
452	 23.75	0	467504..468724	-	406	157736723	-	Abu_0462	-	outer membrane component of efflux system
453	 22.78	-1	468735..469331	-	198	157736724	-	Abu_0463	-	hypothetical protein
454	 22.14	-1	469422..470234	-	270	157736725	-	Abu_0464	-	hypothetical protein
455	 29.54	0	470416..472023	+	535	157736726	-	Abu_0465	-	quinohemoprotein amine dehydrogenase, 60 kDa subunit
456	 27.29	0	472033..473406	+	457	157736727	-	Abu_0466	-	quinohemoprotein amine dehydrogenase, putative SAM-radical dependent activating subunit
457	 36.14	+2	473417..473737	+	106	157736728	-	Abu_0467	-	quinohemoprotein amine dehydrogenase, 9 kDa subunit
458	 27.95	0	473755..474888	+	377	157736729	-	Abu_0468	-	quinohemoprotein amine dehydrogenase, 40 kDa subunit
459	 23.69	0	474903..476540	+	545	157736730	-	Abu_0469	-	ABC transporter, ATP-binding protein
460	 25.24	0	476533..477162	+	209	157736731	-	Abu_0470	-	hypothetical protein
461	 26.70	0	477159..478484	+	441	157736732	-	Abu_0471	-	hypothetical protein
462	 26.72	0	478493..480352	-	619	157736733	-	Abu_0472	-	GGDEF domain-containing protein
463	 33.19	+1	480423..481130	-	235	157736734	hisA	Abu_0473	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
464	 28.17	0	481142..481993	-	283	157736735	-	Abu_0474	-	hypothetical protein
465	 29.72	0	482014..482622	-	202	157736736	hisH1	Abu_0475	-	glutamine amidotransferase HisH
466	 26.53	0	482665..483237	-	190	157736737	ctsW	Abu_0476	-	transformation system protein
467	 25.74	0	483387..483794	+	135	157736738	-	Abu_0477	-	hypothetical protein
468	 31.21	+1	483936..485723	-	595	157736739	lepA	Abu_0478	-	GTP-binding protein LepA
469	 26.59	0	485898..486164	+	88	157736740	-	Abu_0479	-	hypothetical protein
470	 27.62	0	486176..488695	+	839	157736741	-	Abu_0480	-	heavy-metal transporting P-type ATPase
471	 31.56	+1	488761..489777	-	338	157736742	cadF	Abu_0481	-	outer membrane fibronectin-binding protein
472	 31.51	+1	489857..490789	-	310	157736743	prsA	Abu_0482	-	ribose-phosphate pyrophosphokinase
473	 30.80	+1	491053..492234	+	393	157736744	-	Abu_0483	-	hypothetical protein
474	 29.67	0	492280..493317	-	345	157736745	trmU1	Abu_0484	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
475	 31.43	+1	493329..494432	-	367	157736746	trmU2	Abu_0485	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
476	 26.13	0	494480..494965	-	161	157736747	folK	Abu_0486	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
477	 25.73	0	494996..496021	-	341	157736748	pepQ	Abu_0487	-	prolidase (Xaa-Pro dipeptidase) (pepQ)
478	 30.30	0	496099..496593	+	164	157736749	aroQ	Abu_0488	-	3-dehydroquinate dehydratase
479	 27.24	0	496541..497821	+	426	157736750	-	Abu_0489	-	chlorohydrolase
480	 30.06	0	497814..498698	+	294	157736751	pspA	Abu_0490	-	protease IV (PspA)
481	 19.61	-2	498781..499443	-	220	157736752	-	Abu_0491	-	hypothetical protein
482	 32.84	+1	499680..500894	-	404	157736753	ackA1	Abu_0492	-	acetate kinase
483	 32.93	+1	500921..501916	-	331	157736754	pta	Abu_0493	-	phosphate acetyltransferase
484	 28.80	0	502160..503350	-	396	157736755	ackA2	Abu_0494	-	acetate kinase
485	 28.86	0	503454..504392	-	312	157736756	-	Abu_0495	-	cation efflux protein
486	 28.72	0	504450..505640	-	396	157736757	ackA3	Abu_0496	-	acetate kinase
487	 24.14	0	505661..506269	-	202	157736758	dnaQ1	Abu_0497	-	DNA polymerase III, epsilon subunit
488	 24.21	0	506262..508103	-	613	157736759	-	Abu_0498	-	hypothetical protein
489	 33.03	+1	508154..509821	-	555	157736760	-	Abu_0499	-	sodium:solute symporter family protein
490	 25.40	0	509821..510135	-	104	157736761	-	Abu_0500	-	hypothetical protein
491	 34.67	+2	510362..512011	-	549	157736762	-	Abu_0501	-	sodium:solute symporter family protein
492	 27.37	0	512011..512379	-	122	157736763	-	Abu_0502	-	hypothetical protein
493	 23.53	0	512451..513062	-	203	157736764	dnaQ2	Abu_0503	-	DNA polymerase III, epsilon subunit
494	 25.15	0	513062..514882	-	606	157736765	-	Abu_0504	-	cyclic nucleotide-binding domain-containing protein
495	 26.05	0	514902..516671	-	589	157736766	-	Abu_0505	-	sodium/solute symporter family protein
496	 26.27	0	516677..516931	-	84	157736767	-	Abu_0506	-	hypothetical protein
497	 24.43	0	517007..517669	-	220	157736768	-	Abu_0507	-	two-component response regulator
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.