IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
374	 30.86	+1	383775..385067	+	430	157736645	hisD	Abu_0384	-	histidinol dehydrogenase
375	 26.40	0	385077..385379	+	100	157736646	-	Abu_0385	-	hypothetical protein
376	 28.56	0	385390..386289	+	299	157736647	ispB	Abu_0386	-	octaprenyl-diphosphate synthase
377	 27.17	0	386289..387587	+	432	157736648	hemA	Abu_0387	-	glutamyl-tRNA reductase
378	 29.47	0	387604..389310	+	568	157736649	proS	Abu_0388	-	prolyl-tRNA synthetase
379	 25.70	0	389322..390212	+	296	157736650	mscS	Abu_0389	-	mechanosensitive ion channel
380	 20.31	-1	390424..391398	+	324	157736651	-	Abu_0390	-	tRNA nucleotidyltransferase/poly(A) polymerase
381	 29.48	0	391455..391895	+	146	157736652	-	Abu_0391	-	hypothetical protein
382	 25.11	0	391879..393678	+	599	157736653	-	Abu_0392	-	hypothetical protein
383	 24.74	0	393688..394920	-	410	157736654	lnt	Abu_0393	-	apolipoprotein N-acyltransferase
384	 28.41	0	394949..395212	+	87	157736655	yajC	Abu_0394	-	preprotein translocase subunit
385	 30.46	0	395279..396844	+	521	157736656	secD	Abu_0395	-	protein-export membrane protein SecD
386	 27.04	0	396844..397812	+	322	157736657	secF	Abu_0396	-	preprotein translocase subunit SecF
387	 22.22	-1	397881..398060	+	59	157736658	-	Abu_0397	-	hypothetical protein
388	 22.96	-1	398053..398457	-	134	157736659	-	Abu_0398	-	hypothetical protein
389	 31.08	+1	398463..399218	-	251	157736660	motB	Abu_0399	-	flagellar motor protein MotB
390	 34.26	+2	399222..399980	-	252	157736661	motA	Abu_0400	-	flagellar motor protein MotA
391	 30.72	+1	400128..400472	+	114	157736662	-	Abu_0401	-	hypothetical protein
392	 29.16	0	400472..402937	+	821	157736663	leuS	Abu_0402	-	leucyl-tRNA synthetase
393	 28.00	0	402940..403464	+	174	157736664	-	Abu_0403	-	hypothetical protein
394	 24.89	0	403467..404639	+	390	157736665	folC	Abu_0404	-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase
395	 25.51	0	404626..406746	+	706	157736666	-	Abu_0405	-	helicase
396	 25.29	0	406747..408450	-	567	157736667	-	Abu_0406	-	phospholipid/glycerol acyltransferase, hemolysin
397	 27.54	0	408556..409263	+	235	157736668	-	Abu_0407	-	hypothetical protein
398	 22.22	-1	409281..409658	-	125	157736669	-	Abu_0408	-	hypothetical protein
399	 24.51	0	409789..410094	+	101	157736670	-	Abu_0409	-	hypothetical protein
400	 28.71	0	410094..413081	+	995	157736671	mfd	Abu_0410	-	transcription-repair coupling factor
401	 27.36	0	413093..413611	+	172	157736672	-	Abu_0411	-	putative acetyltransferase
402	 24.73	0	413608..414549	-	313	157736673	-	Abu_0412	-	hypothetical protein
403	 25.50	0	414654..415100	+	148	157736674	-	Abu_0413	-	putative periplasmic protein
404	 26.28	0	415134..415814	+	226	157736675	ompR	Abu_0414	-	two-component response regulator
405	 20.63	-1	415811..417046	+	411	157736676	-	Abu_0415	-	two-component sensor histidine kinase
406	 26.11	0	417092..418198	+	368	157736677	-	Abu_0416	-	hypothetical protein
407	 26.75	0	418249..419661	+	470	157736678	-	Abu_0417	-	methyl-accepting chemotaxis protein
408	 25.66	0	419654..420031	+	125	157736679	-	Abu_0418	-	two-component response regulator
409	 19.58	-2	420032..422074	+	680	157736680	-	Abu_0419	-	two-component sensor histidine kinase
410	 21.45	-1	422071..424494	+	807	157736681	-	Abu_0420	-	two-component sensor histidine kinase
411	 27.92	0	424495..425307	+	270	157736682	-	Abu_0421	-	hypothetical protein
412	 27.04	0	425354..426148	+	264	157736683	-	Abu_0422	-	hypothetical protein
413	 26.10	0	426145..426393	+	82	157736684	-	Abu_0423	-	hypothetical protein
414	 26.16	0	426531..427241	+	236	157736685	ubiE	Abu_0424	-	ubiquinone/menaquinone biosynthesis methyltransferase
415	 26.01	0	427266..428453	+	395	157736686	xseA	Abu_0425	-	exodeoxyribonuclease VII large subunit
416	 30.00	0	428527..429006	+	159	157736687	cheW	Abu_0426	-	chemotaxis protein CheW
417	 27.90	0	429034..429567	-	177	157736688	-	Abu_0427	-	peptidyl-prolyl cis-trans isomerase-like protein
418	 29.17	0	429721..430104	+	127	157736689	panD	Abu_0428	-	aspartate alpha-decarboxylase
419	 28.04	0	430097..430417	+	106	157736690	-	Abu_0429	-	hypothetical protein
420	 26.95	0	430422..431282	+	286	157736691	ispA	Abu_0430	-	geranyltranstransferase
421	 29.46	0	431419..431676	+	85	157736692	groES	Abu_0431	-	10 kDa chaperonin
422	 32.78	+1	431676..433310	+	544	157736693	groEL	Abu_0432	-	chaperonin GroEL
423	 23.09	-1	433660..435036	-	458	157736694	-	Abu_0433	-	two-component sensor histidine kinase
424	 24.78	0	435026..435703	-	225	157736695	-	Abu_0434	-	two-component response regulator
425	 22.81	-1	435700..436431	-	243	157736696	-	Abu_0435	-	Ser/Thr protein phosphatase family protein
426	 22.81	-1	436428..436883	-	151	157736697	-	Abu_0436	-	hypothetical protein
427	 24.38	0	436887..437411	-	174	157736698	-	Abu_0437	-	putative periplasmic protein
428	 25.57	0	437404..438369	-	321	157736699	-	Abu_0438	-	hypothetical protein
429	 25.13	0	438357..439928	-	523	157736700	-	Abu_0439	-	hypothetical protein
430	 25.00	0	439912..440535	-	207	157736701	-	Abu_0440	-	ABC transporter, ATP-binding protein
431	 25.12	0	440532..441614	-	360	157736702	-	Abu_0441	-	ABC transporter, permease protein
432	 23.13	-1	441706..442293	-	195	157736703	-	Abu_0442	-	hypothetical protein
433	 25.71	0	442328..443101	+	257	157736704	suhB	Abu_0443	-	inositol-1-monophosphatase
434	 28.79	0	443151..444953	+	600	157736705	glmS	Abu_0444	-	D-fructose-6-phosphate amidotransferase
435	 32.30	+1	445082..446341	+	419	157736706	metK	Abu_0445	-	S-adenosylmethionine synthetase
436	 31.13	+1	446443..447306	+	287	157736707	accD	Abu_0446	-	acetyl-CoA carboxylase subunit beta
437	 23.69	0	447310..447921	+	203	157736708	thiE	Abu_0447	-	thiamine-phosphate pyrophosphorylase
438	 26.04	0	447887..448366	+	159	157736709	-	Abu_0448	-	hypothetical protein
439	 23.51	0	448426..449433	+	335	157736710	-	Abu_0449	-	hypothetical protein
440	 30.54	+1	449434..450363	+	309	157736711	-	Abu_0450	-	tRNA-dihydrouridine synthase
441	 26.50	0	450445..451263	+	272	157736712	prmA	Abu_0451	-	ribosomal protein L11 methyltransferase
442	 31.22	+1	451268..453253	+	661	157736713	ftsH1	Abu_0452	-	cell division protein FtsH
443	 25.29	0	453372..455198	+	608	157736714	-	Abu_0453	-	two-component response regulator
444	 22.55	-1	455185..455592	+	135	157736715	-	Abu_0454	-	two-component response regulator
445	 24.79	0	455594..458167	+	857	157736716	-	Abu_0455	-	two-component sensor histidine kinase
446	 31.85	+1	458444..459997	+	517	157736717	leuA1	Abu_0456	-	2-isopropylmalate synthase
447	 24.32	0	460037..460369	+	110	157736718	-	Abu_0457	-	hypothetical protein
448	 28.33	0	460366..460785	+	139	157736719	-	Abu_0458	-	hypothetical protein
449	 26.62	0	460764..463742	+	992	157736720	mutS1	Abu_0459	-	mismatch repair ATPase
450	 26.76	0	463782..466808	-	1008	157736721	-	Abu_0460	-	outer membrane component of efflux system
451	 23.23	-1	466810..467502	-	230	157736722	-	Abu_0461	-	putative membrane fusion component of efflux system
452	 23.75	0	467504..468724	-	406	157736723	-	Abu_0462	-	outer membrane component of efflux system
453	 22.78	-1	468735..469331	-	198	157736724	-	Abu_0463	-	hypothetical protein
454	 22.14	-1	469422..470234	-	270	157736725	-	Abu_0464	-	hypothetical protein
455	 29.54	0	470416..472023	+	535	157736726	-	Abu_0465	-	quinohemoprotein amine dehydrogenase, 60 kDa subunit
456	 27.29	0	472033..473406	+	457	157736727	-	Abu_0466	-	quinohemoprotein amine dehydrogenase, putative SAM-radical dependent activating subunit
457	 36.14	+2	473417..473737	+	106	157736728	-	Abu_0467	-	quinohemoprotein amine dehydrogenase, 9 kDa subunit
458	 27.95	0	473755..474888	+	377	157736729	-	Abu_0468	-	quinohemoprotein amine dehydrogenase, 40 kDa subunit
459	 23.69	0	474903..476540	+	545	157736730	-	Abu_0469	-	ABC transporter, ATP-binding protein
460	 25.24	0	476533..477162	+	209	157736731	-	Abu_0470	-	hypothetical protein
461	 26.70	0	477159..478484	+	441	157736732	-	Abu_0471	-	hypothetical protein
462	 26.72	0	478493..480352	-	619	157736733	-	Abu_0472	-	GGDEF domain-containing protein
463	 33.19	+1	480423..481130	-	235	157736734	hisA	Abu_0473	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
464	 28.17	0	481142..481993	-	283	157736735	-	Abu_0474	-	hypothetical protein
465	 29.72	0	482014..482622	-	202	157736736	hisH1	Abu_0475	-	glutamine amidotransferase HisH
466	 26.53	0	482665..483237	-	190	157736737	ctsW	Abu_0476	-	transformation system protein
467	 25.74	0	483387..483794	+	135	157736738	-	Abu_0477	-	hypothetical protein
468	 31.21	+1	483936..485723	-	595	157736739	lepA	Abu_0478	-	GTP-binding protein LepA
469	 26.59	0	485898..486164	+	88	157736740	-	Abu_0479	-	hypothetical protein
470	 27.62	0	486176..488695	+	839	157736741	-	Abu_0480	-	heavy-metal transporting P-type ATPase
471	 31.56	+1	488761..489777	-	338	157736742	cadF	Abu_0481	-	outer membrane fibronectin-binding protein
472	 31.51	+1	489857..490789	-	310	157736743	prsA	Abu_0482	-	ribose-phosphate pyrophosphokinase
473	 30.80	+1	491053..492234	+	393	157736744	-	Abu_0483	-	hypothetical protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.