IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
314	 26.59	0	319275..321203	+	642	157736585	-	Abu_0324	-	methyl-accepting chemotaxis protein
315	 21.42	-1	321178..322050	+	290	157736586	-	Abu_0325	-	hypothetical protein
316	 26.90	0	322146..322751	+	201	157736587	-	Abu_0326	-	hypothetical protein
317	 30.54	+1	322769..323734	-	321	157736588	trpS	Abu_0327	-	tryptophanyl-tRNA synthetase
318	 29.11	0	323774..325879	-	701	157736589	-	Abu_0328	-	TonB-dependent receptor protein
319	 24.91	0	326001..327164	-	387	157736590	-	Abu_0329	-	hypothetical protein
320	 24.40	0	327248..328423	-	391	157736591	-	Abu_0330	-	major facilitator superfamily AmpG-like permease
321	 23.74	0	328427..329416	-	329	157736592	-	Abu_0331	-	O-methyltransferase
322	 22.67	-1	329419..329643	-	74	157736593	-	Abu_0332	-	hypothetical protein
323	 27.63	0	329652..331721	-	689	157736594	-	Abu_0333	-	TonB-dependent receptor protein
324	 24.19	0	331763..332692	+	309	157736595	-	Abu_0334	-	transcriptional regulator
325	 28.70	0	332681..333220	-	179	157736596	-	Abu_0335	-	hypothetical protein
326	 29.68	0	333214..334389	-	391	157736597	-	Abu_0336	-	major facilitator superfamily transporter
327	 26.39	0	334386..335594	-	402	157736598	-	Abu_0337	-	major facilitator superfamily transporter
328	 28.28	0	335591..337372	-	593	157736599	-	Abu_0338	-	ABC transporter, ATP-binding/permease protein
329	 29.04	0	337365..339158	-	597	157736600	-	Abu_0339	-	ABC transporter, ATP-binding/permease protein
330	 29.26	0	339261..341348	-	695	157736601	-	Abu_0340	-	TonB-dependent receptor protein
331	 23.78	0	341462..342424	+	320	157736602	-	Abu_0341	-	AraC family transcriptional regulator
332	 26.39	0	342451..344481	-	676	157736603	-	Abu_0342	-	TonB-dependent receptor protein
333	 28.33	0	344649..344948	+	99	157736604	-	Abu_0343	-	hypothetical protein
334	 26.61	0	344960..346015	+	351	157736605	-	Abu_0344	-	cation efflux system, membrane protein
335	 29.06	0	346070..347308	+	412	157736606	serS	Abu_0345	-	seryl-tRNA synthetase
336	 23.67	0	347580..350705	-	1041	157736607	nrfI	Abu_0346	-	cytochrome c biogenesis protein
337	 32.86	+1	350755..352245	-	496	157736608	nrfA	Abu_0347	-	cytochrome c nitrite reductase
338	 33.33	+1	352259..352789	-	176	157736609	nrfH	Abu_0348	-	cytochrome c nitrite reductase, small subunit NrfH
339	 23.77	0	352914..353300	-	128	157736610	-	Abu_0349	-	hypothetical protein
340	 26.28	0	353307..354923	-	538	157736611	-	Abu_0350	-	EAL/GGDEF/PAS domain-containing protein
341	 27.03	0	355015..355458	-	147	157736612	-	Abu_0351	-	methyl-accepting chemotaxis protein
342	 28.12	0	355460..355843	-	127	157736613	napD	Abu_0352	-	putative periplasmic nitrate reductase assembly protein NapD
343	 22.71	-1	355845..356804	-	319	157736614	napL	Abu_0353	-	putative periplasmic protein
344	 28.51	0	356813..357289	-	158	157736615	napF	Abu_0354	-	ferredoxin-type protein NapF
345	 32.01	+1	357289..357894	-	201	157736616	napB	Abu_0355	-	periplasmic nitrate reductase, small subunit, cytochrome c-type protein NapB
346	 28.50	0	357896..358702	-	268	157736617	napH	Abu_0356	-	quinol dehydrogenase membrane component
347	 33.70	+1	358699..359511	-	270	157736618	napG	Abu_0357	-	quinol dehydrogenase periplasmic component
348	 33.83	+1	359529..362339	-	936	157736619	napA	Abu_0358	-	nitrate reductase
349	 30.01	0	362606..363598	+	330	157736620	dctP	Abu_0359	-	C4-dicarboxylate-binding periplasmic protein
350	 31.14	+1	363612..364157	+	181	157736621	dctQ	Abu_0360	-	C4-dicarboxylate transport system, permease small subunit
351	 31.93	+1	364160..365440	+	426	157736622	dctM	Abu_0361	-	C4-dicarboxylate transport protein
352	 22.14	-1	365467..367029	-	520	157736623	-	Abu_0362	-	two-component sensor histidine kinase
353	 23.18	-1	367096..367794	+	232	157736624	-	Abu_0363	-	two-component response regulator
354	 26.50	0	367813..368295	-	160	157736625	menG	Abu_0364	-	S-adenosylmethionine:2-demethylmenaquinone methyltransferase
355	 30.05	0	368451..369182	-	243	157736626	cysG	Abu_0365	-	uroporphyrin III C-methyltransferase
356	 21.86	-1	369238..370239	-	333	157736627	-	Abu_0366	-	hypothetical protein
357	 23.42	-1	370236..370901	-	221	157736628	-	Abu_0367	-	putative transcriptional regulator
358	 26.69	0	370987..371904	+	305	157736629	-	Abu_0368	-	glycosyltransferase, putative
359	 26.85	0	371920..372891	+	323	157736630	moaA	Abu_0369	-	molybdenum cofactor biosynthesis protein A
360	 26.74	0	372988..373260	+	90	157736631	rpsO	Abu_0370	-	30S ribosomal protein S15
361	 26.57	0	373389..373787	+	132	157736632	-	Abu_0371	-	BadM/Rrf2 family transcriptional regulator
362	 24.37	0	373787..374824	+	345	157736633	-	Abu_0372	-	hypothetical protein
363	 28.70	0	374835..375266	+	143	157736634	-	Abu_0373	-	CoA-binding domain-containing protein
364	 22.85	-1	375263..376540	-	425	157736635	-	Abu_0374	-	two-component sensor histidine kinase
365	 29.81	0	376565..377245	-	226	157736636	-	Abu_0375	-	two-component response regulator
366	 27.78	0	377442..378251	+	269	157736637	ppiC	Abu_0376	-	peptidyl-prolyl cis-trans isomerase
367	 32.30	+1	378262..379329	+	355	157736638	fba	Abu_0377	-	fructose-bisphosphate aldolase
368	 31.66	+1	379481..380977	+	498	157736639	ald	Abu_0378	-	aldehyde dehydrogenase
369	 29.49	0	381031..381420	+	129	157736640	-	Abu_0379	-	hypothetical protein
370	 25.64	0	381421..381810	-	129	157736641	exbD1	Abu_0380	-	biopolymer transport protein ExbD
371	 27.43	0	381810..382283	-	157	157736642	exbB1	Abu_0381	-	biopolymer transport protein ExbB
372	 23.21	-1	382302..383210	+	302	157736643	-	Abu_0382	-	hypothetical protein
373	 26.00	0	383297..383773	+	158	157736644	aroK	Abu_0383	-	shikimate kinase
374	 30.86	+1	383775..385067	+	430	157736645	hisD	Abu_0384	-	histidinol dehydrogenase
375	 26.40	0	385077..385379	+	100	157736646	-	Abu_0385	-	hypothetical protein
376	 28.56	0	385390..386289	+	299	157736647	ispB	Abu_0386	-	octaprenyl-diphosphate synthase
377	 27.17	0	386289..387587	+	432	157736648	hemA	Abu_0387	-	glutamyl-tRNA reductase
378	 29.47	0	387604..389310	+	568	157736649	proS	Abu_0388	-	prolyl-tRNA synthetase
379	 25.70	0	389322..390212	+	296	157736650	mscS	Abu_0389	-	mechanosensitive ion channel
380	 20.31	-1	390424..391398	+	324	157736651	-	Abu_0390	-	tRNA nucleotidyltransferase/poly(A) polymerase
381	 29.48	0	391455..391895	+	146	157736652	-	Abu_0391	-	hypothetical protein
382	 25.11	0	391879..393678	+	599	157736653	-	Abu_0392	-	hypothetical protein
383	 24.74	0	393688..394920	-	410	157736654	lnt	Abu_0393	-	apolipoprotein N-acyltransferase
384	 28.41	0	394949..395212	+	87	157736655	yajC	Abu_0394	-	preprotein translocase subunit
385	 30.46	0	395279..396844	+	521	157736656	secD	Abu_0395	-	protein-export membrane protein SecD
386	 27.04	0	396844..397812	+	322	157736657	secF	Abu_0396	-	preprotein translocase subunit SecF
387	 22.22	-1	397881..398060	+	59	157736658	-	Abu_0397	-	hypothetical protein
388	 22.96	-1	398053..398457	-	134	157736659	-	Abu_0398	-	hypothetical protein
389	 31.08	+1	398463..399218	-	251	157736660	motB	Abu_0399	-	flagellar motor protein MotB
390	 34.26	+2	399222..399980	-	252	157736661	motA	Abu_0400	-	flagellar motor protein MotA
391	 30.72	+1	400128..400472	+	114	157736662	-	Abu_0401	-	hypothetical protein
392	 29.16	0	400472..402937	+	821	157736663	leuS	Abu_0402	-	leucyl-tRNA synthetase
393	 28.00	0	402940..403464	+	174	157736664	-	Abu_0403	-	hypothetical protein
394	 24.89	0	403467..404639	+	390	157736665	folC	Abu_0404	-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase
395	 25.51	0	404626..406746	+	706	157736666	-	Abu_0405	-	helicase
396	 25.29	0	406747..408450	-	567	157736667	-	Abu_0406	-	phospholipid/glycerol acyltransferase, hemolysin
397	 27.54	0	408556..409263	+	235	157736668	-	Abu_0407	-	hypothetical protein
398	 22.22	-1	409281..409658	-	125	157736669	-	Abu_0408	-	hypothetical protein
399	 24.51	0	409789..410094	+	101	157736670	-	Abu_0409	-	hypothetical protein
400	 28.71	0	410094..413081	+	995	157736671	mfd	Abu_0410	-	transcription-repair coupling factor
401	 27.36	0	413093..413611	+	172	157736672	-	Abu_0411	-	putative acetyltransferase
402	 24.73	0	413608..414549	-	313	157736673	-	Abu_0412	-	hypothetical protein
403	 25.50	0	414654..415100	+	148	157736674	-	Abu_0413	-	putative periplasmic protein
404	 26.28	0	415134..415814	+	226	157736675	ompR	Abu_0414	-	two-component response regulator
405	 20.63	-1	415811..417046	+	411	157736676	-	Abu_0415	-	two-component sensor histidine kinase
406	 26.11	0	417092..418198	+	368	157736677	-	Abu_0416	-	hypothetical protein
407	 26.75	0	418249..419661	+	470	157736678	-	Abu_0417	-	methyl-accepting chemotaxis protein
408	 25.66	0	419654..420031	+	125	157736679	-	Abu_0418	-	two-component response regulator
409	 19.58	-2	420032..422074	+	680	157736680	-	Abu_0419	-	two-component sensor histidine kinase
410	 21.45	-1	422071..424494	+	807	157736681	-	Abu_0420	-	two-component sensor histidine kinase
411	 27.92	0	424495..425307	+	270	157736682	-	Abu_0421	-	hypothetical protein
412	 27.04	0	425354..426148	+	264	157736683	-	Abu_0422	-	hypothetical protein
413	 26.10	0	426145..426393	+	82	157736684	-	Abu_0423	-	hypothetical protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.