IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
235	 26.99	0	239893..241296	-	467	157736506	cysS	Abu_0245	-	cysteinyl-tRNA synthetase
236	 28.06	0	241301..242476	-	391	157736507	nusA	Abu_0246	-	transcription elongation factor NusA
237	 26.75	0	242630..242872	+	80	157736508	-	Abu_0247	-	hypothetical protein
238	 29.60	0	242894..244204	+	436	157736509	miaB	Abu_0248	-	tRNA-methylthiotransferase
239	 27.80	0	244207..244821	+	204	157736510	-	Abu_0249	-	putative lipoprotein
240	 21.48	-1	244832..246400	+	522	157736511	-	Abu_0250	-	hypothetical protein
241	 28.15	0	246413..247474	-	353	157736512	-	Abu_0251	-	hypothetical protein
242	 22.64	-1	247480..247797	-	105	157736513	-	Abu_0252	-	hypothetical protein
243	 28.48	0	247802..248440	-	212	157736514	cynT2	Abu_0253	-	carbonic anhydrase
244	 26.02	0	248427..249533	-	368	157736515	bioF	Abu_0254	-	8-amino-7-oxononanoate synthase
245	 24.02	0	249711..250043	-	110	157736516	-	Abu_0255	-	hypothetical protein
246	 26.87	0	250048..250248	-	66	157736517	-	Abu_0256	-	hypothetical protein
247	 28.65	0	250310..251035	-	241	157736518	-	Abu_0257	-	OmpA domain-containing protein
248	 28.79	0	251161..252636	+	491	157736519	pyk	Abu_0258	-	pyruvate kinase
249	 28.97	0	252655..253845	-	396	157736520	argD1	Abu_0259	-	acetylornithine aminotransferase
250	 26.44	0	253905..256226	-	773	157736521	cti	Abu_0260	-	fatty acid cis/trans isomerase
251	 29.39	0	256322..257209	+	295	157736522	pyrB	Abu_0261	-	aspartate carbamoyltransferase catalytic subunit
252	 24.38	0	257206..258165	+	319	157736523	pabB	Abu_0262	-	para-aminobenzoate synthase component I
253	 28.14	0	258228..258785	+	185	157736524	-	Abu_0263	-	isochorismatase hydrolase
254	 22.47	-1	258790..259461	+	223	157736525	-	Abu_0264	-	two-component response regulator
255	 23.14	-1	259478..260056	+	192	157736526	-	Abu_0265	-	hypothetical protein
256	 32.61	+1	260053..260607	-	184	157736527	phnA	Abu_0266	-	phosphonoacetate hydrolase
257	 25.61	0	260665..261156	+	163	157736528	-	Abu_0267	-	metal-dependent hydrolase
258	 28.00	0	261177..261926	+	249	157736529	-	Abu_0268	-	membrane protein, permease
259	 26.81	0	261999..262565	+	188	157736530	-	Abu_0269	-	hypothetical protein
260	 25.04	0	262568..263773	-	401	157736531	-	Abu_0270	-	putative periplasmic protein
261	 24.33	0	263887..265086	+	399	157736532	-	Abu_0271	-	hypothetical protein
262	 24.55	0	265093..266082	+	329	157736533	-	Abu_0272	-	periplasmic protein
263	 24.39	0	266079..266201	+	40	157736534	-	Abu_0273	-	hypothetical protein
264	 25.29	0	266185..267117	-	310	157736535	-	Abu_0274	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
265	 25.56	0	267133..268110	-	325	157736536	-	Abu_0275	-	hypothetical protein
266	 33.67	+1	268288..269175	+	295	157736537	prpB	Abu_0276	-	2-methylisocitrate lyase
267	 32.11	+1	269232..270377	+	381	157736538	prpC	Abu_0277	-	methylcitrate synthase
268	 32.18	+1	270479..273070	+	863	157736539	acnA	Abu_0278	-	aconitate hydratase
269	 33.67	+1	273160..274335	+	391	157736540	-	Abu_0279	-	hypothetical protein
270	 22.76	-1	274409..274900	+	163	157736541	-	Abu_0280	-	hypothetical protein
271	 26.15	0	274929..275471	-	180	157736542	-	Abu_0281	-	isochorismatase hydrolase
272	 22.36	-1	275531..277279	-	582	157736543	-	Abu_0282	-	hypothetical protein
273	 30.99	+1	277305..278243	-	312	157736544	hemC	Abu_0283	-	porphobilinogen deaminase
274	 25.51	0	278259..279089	-	276	157736545	-	Abu_0284	-	putative DSBA oxidoreductase
275	 26.19	0	279151..281082	-	643	157736546	dnaX	Abu_0285	-	DNA polymerase III, gamma and tau subunits
276	 27.61	0	281079..281864	-	261	157736547	murI	Abu_0286	-	glutamate racemase
277	 32.59	+1	282089..283441	-	450	157736548	gdhA	Abu_0287	-	glutamate dehydrogenase
278	 30.01	0	283581..284903	-	440	157736549	rho	Abu_0288	-	transcription termination factor Rho
279	 32.66	+1	285063..285659	-	198	157736550	tsaA	Abu_0289	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant
280	 38.46	+2	285865..286137	+	90	157736551	fdxA	Abu_0290	-	ferredoxin
281	 33.82	+1	286249..286662	+	137	157736552	ndk	Abu_0291	-	nucleoside diphosphate kinase
282	 25.13	0	286690..287067	+	125	157736553	-	Abu_0292	-	hypothetical protein
283	 31.37	+1	287079..287231	+	50	157736554	rpmF	Abu_0293	-	50S ribosomal protein L32
284	 31.84	+1	287231..288232	+	333	157736555	plsX	Abu_0294	-	putative glycerol-3-phosphate acyltransferase PlsX
285	 31.74	+1	288259..289260	+	333	157736556	fabH	Abu_0295	-	3-oxoacyl-(acyl carrier protein) synthase III
286	 23.22	-1	289277..289711	-	144	157736557	-	Abu_0296	-	hypothetical protein
287	 25.68	0	289713..291737	-	674	157736558	-	Abu_0297	-	ATP/GTP-binding protein
288	 24.74	0	291737..294088	-	783	157736559	-	Abu_0298	-	ATP/GTP-binding protein
289	 32.10	+1	294188..294919	-	243	157736560	frdB	Abu_0299	-	fumarate reductase iron-sulfur subunit
290	 34.59	+2	294919..296904	-	661	157736561	frdA	Abu_0300	-	fumarate reductase flavoprotein subunit
291	 30.96	+1	296904..297704	-	266	157736562	frdC	Abu_0301	-	fumarate reductase cytochrome b-556 subunit
292	 27.28	0	297902..299422	-	506	157736563	nuoN	Abu_0302	-	NADH-quinone oxidoreductase, N subunit
293	 28.56	0	299419..300906	-	495	157736564	nuoM	Abu_0303	-	NADH-quinone oxidoreductase, M subunit
294	 28.99	0	300908..302794	-	628	157736565	nuoL	Abu_0304	-	NADH-quinone oxidoreductase, L subunit
295	 26.28	0	302796..303107	-	103	157736566	nuoK	Abu_0305	-	NADH-quinone oxidoreductase, K subunit
296	 27.39	0	303111..303632	-	173	157736567	nuoJ	Abu_0306	-	NADH-quinone oxidoreductase, J subunit
297	 30.34	0	303632..304132	-	166	157736568	nuoI	Abu_0307	-	NADH-quinone oxidoreductase, I subunit
298	 30.59	+1	304134..305408	-	424	157736569	nuoH	Abu_0308	-	NADH-quinone oxidoreductase, H subunit
299	 27.97	0	305405..306841	-	478	157736570	nuoG	Abu_0309	-	NADH-quinone oxidoreductase, G subunit
300	 31.70	+1	306878..308164	-	428	157736571	gltA	Abu_0310	-	citrate synthase
301	 32.37	+1	308189..309439	-	416	157736572	nuoF	Abu_0311	-	NADH-quinone oxidoreductase, F subunit
302	 29.63	0	309429..309914	-	161	157736573	nuoE	Abu_0312	-	NADH-quinone oxidoreductase, E subunit
303	 31.01	+1	309914..311548	-	544	157736574	nuoCD	Abu_0313	-	NADH-quinone oxidoreductase, C/D subunit
304	 35.27	+2	311541..312056	-	171	157736575	nuoB	Abu_0314	-	NADH-quinone oxidoreductase, B subunit
305	 27.55	0	312047..312409	-	120	157736576	nuoA	Abu_0315	-	NADH-quinone oxidoreductase, A subunit
306	 26.65	0	312542..313708	-	388	157736577	-	Abu_0316	-	aminotransferase/L-cysteine desulfhydrase
307	 28.48	0	313793..315604	+	603	157736578	-	Abu_0317	-	carboxylyase-related protein
308	 30.34	0	315626..316093	-	155	157736579	-	Abu_0318	-	hypothetical protein
309	 31.40	+1	316095..316868	-	257	157736580	-	Abu_0319	-	hypothetical protein
310	 24.32	0	316929..317261	+	110	157736581	-	Abu_0320	-	hypothetical protein
311	 23.41	-1	317230..317874	+	214	157736582	-	Abu_0321	-	pantothenate kinase
312	 29.23	0	317852..318460	+	202	157736583	hisG	Abu_0322	-	ATP phosphoribosyltransferase catalytic subunit
313	 23.81	0	318460..319152	+	230	157736584	-	Abu_0323	-	putative methyltransferase
314	 26.59	0	319275..321203	+	642	157736585	-	Abu_0324	-	methyl-accepting chemotaxis protein
315	 21.42	-1	321178..322050	+	290	157736586	-	Abu_0325	-	hypothetical protein
316	 26.90	0	322146..322751	+	201	157736587	-	Abu_0326	-	hypothetical protein
317	 30.54	+1	322769..323734	-	321	157736588	trpS	Abu_0327	-	tryptophanyl-tRNA synthetase
318	 29.11	0	323774..325879	-	701	157736589	-	Abu_0328	-	TonB-dependent receptor protein
319	 24.91	0	326001..327164	-	387	157736590	-	Abu_0329	-	hypothetical protein
320	 24.40	0	327248..328423	-	391	157736591	-	Abu_0330	-	major facilitator superfamily AmpG-like permease
321	 23.74	0	328427..329416	-	329	157736592	-	Abu_0331	-	O-methyltransferase
322	 22.67	-1	329419..329643	-	74	157736593	-	Abu_0332	-	hypothetical protein
323	 27.63	0	329652..331721	-	689	157736594	-	Abu_0333	-	TonB-dependent receptor protein
324	 24.19	0	331763..332692	+	309	157736595	-	Abu_0334	-	transcriptional regulator
325	 28.70	0	332681..333220	-	179	157736596	-	Abu_0335	-	hypothetical protein
326	 29.68	0	333214..334389	-	391	157736597	-	Abu_0336	-	major facilitator superfamily transporter
327	 26.39	0	334386..335594	-	402	157736598	-	Abu_0337	-	major facilitator superfamily transporter
328	 28.28	0	335591..337372	-	593	157736599	-	Abu_0338	-	ABC transporter, ATP-binding/permease protein
329	 29.04	0	337365..339158	-	597	157736600	-	Abu_0339	-	ABC transporter, ATP-binding/permease protein
330	 29.26	0	339261..341348	-	695	157736601	-	Abu_0340	-	TonB-dependent receptor protein
331	 23.78	0	341462..342424	+	320	157736602	-	Abu_0341	-	AraC family transcriptional regulator
332	 26.39	0	342451..344481	-	676	157736603	-	Abu_0342	-	TonB-dependent receptor protein
333	 28.33	0	344649..344948	+	99	157736604	-	Abu_0343	-	hypothetical protein
334	 26.61	0	344960..346015	+	351	157736605	-	Abu_0344	-	cation efflux system, membrane protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.