IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
205	 21.41	-1	209748..210728	-	326	157736476	tilS	Abu_0213	-	tRNA(Ile)-lysidine synthase
206	 30.50	+1	210731..212071	-	446	157736477	yliG	Abu_0214	-	MiaB-like tRNA modifying enzyme
207	 27.96	0	212139..212957	-	272	157736478	panC	Abu_0215	-	pantoate--beta-alanine ligase
208	 25.42	0	212977..213936	-	319	157736479	-	Abu_0216	-	oligopeptide ABC transporter, permease protein
209	 27.17	0	213966..214322	+	118	157736480	acpS	Abu_0217	-	holo-(acyl-carrier-protein) synthase
210	 31.95	+1	214357..215583	-	408	157736481	gltS	Abu_0218	-	sodium:glutamate symporter
211	 29.40	0	215607..215987	-	126	157736482	-	Abu_0219	-	Holliday junction resolvase-like protein
212	 29.93	0	215984..216895	-	303	157736483	metF	Abu_0220	-	5,10-methylenetetrahydrofolate reductase
213	 30.14	0	216976..217602	+	208	157736484	serB	Abu_0221	-	3-phosphoserine phosphatase
214	 28.00	0	217605..218597	+	330	157736485	tal	Abu_0222	-	transaldolase
215	 31.71	+1	218665..220017	+	450	157736486	dhs	Abu_0223	-	3-deoxy-D-arabinoheptulosonate 7-phosphate synthase (DAHP synthetase class II)
216	 27.76	0	220083..220925	+	280	157736487	tsx	Abu_0224	-	nucleoside-specific channel-forming protein
217	 27.41	0	224501..225496	+	331	157736488	-	Abu_0227	-	DNA binding protein
218	 25.15	0	225491..225832	-	113	157736489	-	Abu_0228	-	hypothetical protein
219	 27.15	0	225983..226273	-	96	157736490	gatC	Abu_0229	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
220	 31.19	+1	226317..227438	-	373	157736491	tgt	Abu_0230	-	queuine tRNA-ribosyltransferase
221	 24.74	0	227540..228982	+	480	157736492	-	Abu_0231	-	hypothetical protein
222	 27.67	0	228992..230122	+	376	157736493	aspB2	Abu_0232	-	hypothetical protein
223	 23.42	-1	230115..230699	+	194	157736494	-	Abu_0233	-	hypothetical protein
224	 28.59	0	230699..232006	+	435	157736495	murC	Abu_0234	-	UDP-N-acetylmuramate--L-alanine ligase
225	 25.87	0	232015..232791	-	258	157736496	dprA	Abu_0235	-	SMF protein, DNA processing chain A
226	 25.37	0	232834..233913	-	359	157736497	-	Abu_0236	-	hypothetical protein
227	 33.82	+1	233955..234977	-	340	157736498	ilvC	Abu_0237	-	ketol-acid reductoisomerase
228	 24.65	0	235102..236955	+	617	157736499	rnr	Abu_0238	-	ribonuclease R
229	 24.07	0	236945..237322	-	125	157736500	-	Abu_0239	-	hypothetical protein
230	 25.18	0	237387..238367	+	326	157736501	-	Abu_0240	-	DNA polymerase III subunit delta
231	 29.41	0	238455..238811	+	118	157736502	rpsF	Abu_0241	-	30S ribosomal protein S6
232	 31.97	+1	238832..239344	+	170	157736503	ssb	Abu_0242	-	single-strand DNA binding protein
233	 28.46	0	239359..239625	+	88	157736504	rpsR	Abu_0243	-	30S ribosomal protein S18
234	 22.39	-1	239698..239898	+	66	157736505	-	Abu_0244	-	hypothetical protein
235	 26.99	0	239893..241296	-	467	157736506	cysS	Abu_0245	-	cysteinyl-tRNA synthetase
236	 28.06	0	241301..242476	-	391	157736507	nusA	Abu_0246	-	transcription elongation factor NusA
237	 26.75	0	242630..242872	+	80	157736508	-	Abu_0247	-	hypothetical protein
238	 29.60	0	242894..244204	+	436	157736509	miaB	Abu_0248	-	tRNA-methylthiotransferase
239	 27.80	0	244207..244821	+	204	157736510	-	Abu_0249	-	putative lipoprotein
240	 21.48	-1	244832..246400	+	522	157736511	-	Abu_0250	-	hypothetical protein
241	 28.15	0	246413..247474	-	353	157736512	-	Abu_0251	-	hypothetical protein
242	 22.64	-1	247480..247797	-	105	157736513	-	Abu_0252	-	hypothetical protein
243	 28.48	0	247802..248440	-	212	157736514	cynT2	Abu_0253	-	carbonic anhydrase
244	 26.02	0	248427..249533	-	368	157736515	bioF	Abu_0254	-	8-amino-7-oxononanoate synthase
245	 24.02	0	249711..250043	-	110	157736516	-	Abu_0255	-	hypothetical protein
246	 26.87	0	250048..250248	-	66	157736517	-	Abu_0256	-	hypothetical protein
247	 28.65	0	250310..251035	-	241	157736518	-	Abu_0257	-	OmpA domain-containing protein
248	 28.79	0	251161..252636	+	491	157736519	pyk	Abu_0258	-	pyruvate kinase
249	 28.97	0	252655..253845	-	396	157736520	argD1	Abu_0259	-	acetylornithine aminotransferase
250	 26.44	0	253905..256226	-	773	157736521	cti	Abu_0260	-	fatty acid cis/trans isomerase
251	 29.39	0	256322..257209	+	295	157736522	pyrB	Abu_0261	-	aspartate carbamoyltransferase catalytic subunit
252	 24.38	0	257206..258165	+	319	157736523	pabB	Abu_0262	-	para-aminobenzoate synthase component I
253	 28.14	0	258228..258785	+	185	157736524	-	Abu_0263	-	isochorismatase hydrolase
254	 22.47	-1	258790..259461	+	223	157736525	-	Abu_0264	-	two-component response regulator
255	 23.14	-1	259478..260056	+	192	157736526	-	Abu_0265	-	hypothetical protein
256	 32.61	+1	260053..260607	-	184	157736527	phnA	Abu_0266	-	phosphonoacetate hydrolase
257	 25.61	0	260665..261156	+	163	157736528	-	Abu_0267	-	metal-dependent hydrolase
258	 28.00	0	261177..261926	+	249	157736529	-	Abu_0268	-	membrane protein, permease
259	 26.81	0	261999..262565	+	188	157736530	-	Abu_0269	-	hypothetical protein
260	 25.04	0	262568..263773	-	401	157736531	-	Abu_0270	-	putative periplasmic protein
261	 24.33	0	263887..265086	+	399	157736532	-	Abu_0271	-	hypothetical protein
262	 24.55	0	265093..266082	+	329	157736533	-	Abu_0272	-	periplasmic protein
263	 24.39	0	266079..266201	+	40	157736534	-	Abu_0273	-	hypothetical protein
264	 25.29	0	266185..267117	-	310	157736535	-	Abu_0274	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
265	 25.56	0	267133..268110	-	325	157736536	-	Abu_0275	-	hypothetical protein
266	 33.67	+1	268288..269175	+	295	157736537	prpB	Abu_0276	-	2-methylisocitrate lyase
267	 32.11	+1	269232..270377	+	381	157736538	prpC	Abu_0277	-	methylcitrate synthase
268	 32.18	+1	270479..273070	+	863	157736539	acnA	Abu_0278	-	aconitate hydratase
269	 33.67	+1	273160..274335	+	391	157736540	-	Abu_0279	-	hypothetical protein
270	 22.76	-1	274409..274900	+	163	157736541	-	Abu_0280	-	hypothetical protein
271	 26.15	0	274929..275471	-	180	157736542	-	Abu_0281	-	isochorismatase hydrolase
272	 22.36	-1	275531..277279	-	582	157736543	-	Abu_0282	-	hypothetical protein
273	 30.99	+1	277305..278243	-	312	157736544	hemC	Abu_0283	-	porphobilinogen deaminase
274	 25.51	0	278259..279089	-	276	157736545	-	Abu_0284	-	putative DSBA oxidoreductase
275	 26.19	0	279151..281082	-	643	157736546	dnaX	Abu_0285	-	DNA polymerase III, gamma and tau subunits
276	 27.61	0	281079..281864	-	261	157736547	murI	Abu_0286	-	glutamate racemase
277	 32.59	+1	282089..283441	-	450	157736548	gdhA	Abu_0287	-	glutamate dehydrogenase
278	 30.01	0	283581..284903	-	440	157736549	rho	Abu_0288	-	transcription termination factor Rho
279	 32.66	+1	285063..285659	-	198	157736550	tsaA	Abu_0289	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant
280	 38.46	+2	285865..286137	+	90	157736551	fdxA	Abu_0290	-	ferredoxin
281	 33.82	+1	286249..286662	+	137	157736552	ndk	Abu_0291	-	nucleoside diphosphate kinase
282	 25.13	0	286690..287067	+	125	157736553	-	Abu_0292	-	hypothetical protein
283	 31.37	+1	287079..287231	+	50	157736554	rpmF	Abu_0293	-	50S ribosomal protein L32
284	 31.84	+1	287231..288232	+	333	157736555	plsX	Abu_0294	-	putative glycerol-3-phosphate acyltransferase PlsX
285	 31.74	+1	288259..289260	+	333	157736556	fabH	Abu_0295	-	3-oxoacyl-(acyl carrier protein) synthase III
286	 23.22	-1	289277..289711	-	144	157736557	-	Abu_0296	-	hypothetical protein
287	 25.68	0	289713..291737	-	674	157736558	-	Abu_0297	-	ATP/GTP-binding protein
288	 24.74	0	291737..294088	-	783	157736559	-	Abu_0298	-	ATP/GTP-binding protein
289	 32.10	+1	294188..294919	-	243	157736560	frdB	Abu_0299	-	fumarate reductase iron-sulfur subunit
290	 34.59	+2	294919..296904	-	661	157736561	frdA	Abu_0300	-	fumarate reductase flavoprotein subunit
291	 30.96	+1	296904..297704	-	266	157736562	frdC	Abu_0301	-	fumarate reductase cytochrome b-556 subunit
292	 27.28	0	297902..299422	-	506	157736563	nuoN	Abu_0302	-	NADH-quinone oxidoreductase, N subunit
293	 28.56	0	299419..300906	-	495	157736564	nuoM	Abu_0303	-	NADH-quinone oxidoreductase, M subunit
294	 28.99	0	300908..302794	-	628	157736565	nuoL	Abu_0304	-	NADH-quinone oxidoreductase, L subunit
295	 26.28	0	302796..303107	-	103	157736566	nuoK	Abu_0305	-	NADH-quinone oxidoreductase, K subunit
296	 27.39	0	303111..303632	-	173	157736567	nuoJ	Abu_0306	-	NADH-quinone oxidoreductase, J subunit
297	 30.34	0	303632..304132	-	166	157736568	nuoI	Abu_0307	-	NADH-quinone oxidoreductase, I subunit
298	 30.59	+1	304134..305408	-	424	157736569	nuoH	Abu_0308	-	NADH-quinone oxidoreductase, H subunit
299	 27.97	0	305405..306841	-	478	157736570	nuoG	Abu_0309	-	NADH-quinone oxidoreductase, G subunit
300	 31.70	+1	306878..308164	-	428	157736571	gltA	Abu_0310	-	citrate synthase
301	 32.37	+1	308189..309439	-	416	157736572	nuoF	Abu_0311	-	NADH-quinone oxidoreductase, F subunit
302	 29.63	0	309429..309914	-	161	157736573	nuoE	Abu_0312	-	NADH-quinone oxidoreductase, E subunit
303	 31.01	+1	309914..311548	-	544	157736574	nuoCD	Abu_0313	-	NADH-quinone oxidoreductase, C/D subunit
304	 35.27	+2	311541..312056	-	171	157736575	nuoB	Abu_0314	-	NADH-quinone oxidoreductase, B subunit
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.