IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2156	 28.29	0	2229392..2231017	-	541	157738426	-	Abu_2227	-	sulfate permease family protein
2157	 25.31	0	2231076..2231723	-	215	157738427	-	Abu_2228	-	hypothetical protein
2158	 28.04	0	2231724..2232347	-	207	157738428	-	Abu_2229	-	hypothetical protein
2159	 18.30	-2	2232419..2232817	+	132	157738429	-	Abu_2230	-	hypothetical protein
2160	 26.24	0	2232814..2234547	+	577	157738430	-	Abu_2231	-	AAA ATPase family protein
2161	 22.98	-1	2234557..2235348	+	263	157738431	-	Abu_2232	-	hypothetical protein
2162	 29.77	0	2235352..2236221	+	289	157738432	-	Abu_2233	-	hypothetical protein
2163	 26.31	0	2236218..2237000	+	260	157738433	murB	Abu_2234	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2164	 30.43	0	2237216..2239486	+	756	157738434	topA	Abu_2235	-	DNA topoisomerase I
2165	 25.34	0	2239486..2239998	+	170	157738435	-	Abu_2236	-	hypothetical protein
2166	 30.86	+1	2239988..2240836	+	282	157738436	bioB	Abu_2237	-	biotin synthase
2167	 26.44	0	2240859..2241569	-	236	157738437	-	Abu_2238	-	hypothetical protein
2168	 28.05	0	2241566..2241811	-	81	157738438	-	Abu_2239	-	hypothetical protein
2169	 31.77	+1	2241815..2243095	-	426	157738439	eno	Abu_2240	-	enolase
2170	 32.29	+1	2243216..2244265	-	349	157738440	recA	Abu_2241	-	recombinase A
2171	 23.08	-1	2244366..2244560	-	64	157738441	-	Abu_2242	-	hypothetical protein
2172	 29.41	0	2244685..2245677	+	330	157738442	pseB	Abu_2243	-	UDP GlcNAc dehydratase/reductase PseB, putative
2173	 25.46	0	2245674..2246804	+	376	157738443	-	Abu_2244	-	DegT/DnrJ/EryC1/StrS aminotransferase
2174	 29.90	0	2246797..2247495	+	232	157738444	neuA	Abu_2245	-	acylneuraminate cytidylyltransferase
2175	 28.46	0	2247492..2248517	+	341	157738445	neuB	Abu_2246	-	N-acetylneuraminic acid synthetase
2176	 25.61	0	2248514..2249536	+	340	157738446	-	Abu_2247	-	glycosyltransferase
2177	 20.25	-1	2249523..2250386	+	287	157738447	-	Abu_2248	-	hypothetical protein
2178	 22.37	-1	2250389..2251054	+	221	157738448	flmE	Abu_2249	-	flagellin modification protein FlmE
2179	 26.20	0	2251036..2252157	+	373	157738449	-	Abu_2250	-	ATP-grasp domain-containing protein
2180	 23.37	-1	2252154..2253026	+	290	157738450	-	Abu_2251	-	hypothetical protein
2181	 26.57	0	2253047..2253667	+	206	157738451	-	Abu_2252	-	hypothetical protein
2182	 22.99	-1	2253682..2255712	+	676	157738452	-	Abu_2253	-	hypothetical protein
2183	 33.98	+2	2255759..2256682	-	307	157738453	flaA	Abu_2254	-	flagellin
2184	 33.44	+1	2256842..2257765	-	307	157738454	flaB	Abu_2255	-	flagellin
2185	 27.33	0	2258098..2259480	+	460	157738455	-	Abu_2256	-	4Fe-4S ferredoxin, iron-sulfur binding
2186	 30.49	+1	2259594..2261210	+	538	157738456	pyrG	Abu_2257	-	CTP synthetase
2187	 25.43	0	2261210..2262778	+	522	157738457	recJ	Abu_2258	-	single-stranded DNA-specific exonuclease
2188	 23.38	-1	2262773..2263375	-	200	157738458	-	Abu_2259	-	hypothetical protein
2189	 27.78	0	2263380..2264009	-	209	157738459	-	Abu_2260	-	hypothetical protein
2190	 27.04	0	2264130..2264669	+	179	157738460	thiJ	Abu_2261	-	4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein ThiJ
2191	 29.77	0	2264743..2268306	+	1187	157738461	dnaE	Abu_2262	-	DNA polymerase III subunit alpha
2192	 28.90	0	2268281..2269069	+	262	157738462	surE	Abu_2263	-	stationary phase survival protein SurE
2193	 23.70	0	2269087..2269356	+	89	157738463	-	Abu_2264	-	hypothetical protein
2194	 25.00	0	2269366..2269629	-	87	157738464	-	Abu_2265	-	hypothetical protein
2195	 30.15	0	2269632..2270102	-	156	157738465	moaC	Abu_2266	-	molybdenum cofactor biosynthesis protein C
2196	 27.48	0	2270208..2270429	+	73	157738466	rpsU	Abu_2267	-	30S ribosomal protein S21
2197	 28.77	0	2276717..2277418	+	233	157738467	-	Abu_2273	-	hypothetical protein
2198	 25.00	0	2277452..2277859	+	135	157738468	-	Abu_2274	-	hypothetical protein
2199	 22.51	-1	2277811..2278503	-	230	157738469	-	Abu_2275	-	putative methyltransferase
2200	 33.05	+1	2278590..2278937	+	115	157738470	secG	Abu_2276	-	protein-export membrane protein SecG
2201	 26.70	0	2278998..2279555	+	185	157738471	frr	Abu_2277	-	ribosome recycling factor
2202	 33.82	+1	2279552..2280166	+	204	157738472	pyrE	Abu_2278	-	orotate phosphoribosyltransferase
2203	 26.46	0	2280166..2280645	+	159	157738473	-	Abu_2279	-	hypothetical protein
2204	 25.58	0	2280645..2281727	+	360	157738474	-	Abu_2280	-	major facilitator transporter
2205	 26.92	0	2281724..2282689	-	321	157738475	-	Abu_2281	-	CorA-like Mg2+ transporter protein
2206	 22.90	-1	2282700..2283437	-	245	157738476	-	Abu_2282	-	hypothetical protein
2207	 26.34	0	2283521..2283892	-	123	157738477	-	Abu_2283	-	competence protein ComEA
2208	 27.97	0	2283959..2284741	-	260	157738478	-	Abu_2284	-	hypothetical protein
2209	 26.99	0	2284914..2286032	+	372	157738479	-	Abu_2285	-	metallophosphoesterase
2210	 27.18	0	2286088..2286981	-	297	157738480	-	Abu_2286	-	hypothetical protein
2211	 29.63	0	2287006..2289111	-	701	157738481	-	Abu_2287	-	TonB-dependent receptor protein
2212	 23.78	0	2289208..2290170	+	320	157738482	-	Abu_2288	-	AraC family transcriptional regulator
2213	 27.54	0	2290174..2290587	-	137	157738483	-	Abu_2289	-	heat shock protein Hsp20
2214	 25.40	0	2290749..2291189	-	146	157738484	-	Abu_2290	-	hypothetical protein
2215	 25.96	0	2291286..2293646	-	786	157738485	-	Abu_2291	-	methyl-accepting chemotaxis protein
2216	 29.40	0	2293840..2294982	-	380	157738486	moeB	Abu_2292	-	molybdopterin biosynthesis protein
2217	 31.40	+1	2295191..2298559	+	1122	157738487	-	Abu_2293	-	hypothetical protein
2218	 26.22	0	2298560..2301049	+	829	157738488	-	Abu_2294	-	hypothetical protein
2219	 27.59	0	2301052..2301939	+	295	157738489	-	Abu_2295	-	hypothetical protein
2220	 30.09	0	2301952..2302998	-	348	157738490	cysA	Abu_2296	-	sulfate ABC transporter ATP-binding protein
2221	 29.85	0	2303014..2303874	-	286	157738491	cysW	Abu_2297	-	sulfate transport system permease protein
2222	 31.23	+1	2303871..2304725	-	284	157738492	cysT	Abu_2298	-	sulfate transport system permease protein
2223	 34.30	+2	2304917..2305849	-	310	157738493	cysK2	Abu_2299	-	cysteine synthase
2224	 24.35	0	2305865..2307088	-	407	157738494	-	Abu_2300	-	EAL domain-containing protein
2225	 23.70	0	2307195..2307464	-	89	157738495	-	Abu_2301	-	hypothetical protein
2226	 29.54	0	2307496..2308575	-	359	157738496	sbp	Abu_2302	-	sulfate-binding protein precursor
2227	 29.85	0	2308850..2309308	-	152	157738497	-	Abu_2303	-	BadM/Rrf2 family transcriptional regulator
2228	 27.22	0	2309400..2310332	-	310	157738498	-	Abu_2304	-	putative succinylglutamate desuccinylase/aspartoacylase
2229	 28.65	0	2310319..2311278	-	319	157738499	-	Abu_2305	-	putative succinylglutamate desuccinylase/aspartoacylase
2230	 26.01	0	2311275..2311943	-	222	157738500	-	Abu_2306	-	hypothetical protein
2231	 29.01	0	2311945..2313309	-	454	157738501	-	Abu_2307	-	hypothetical protein
2232	 33.17	+1	2313528..2315342	-	604	157738502	typA	Abu_2308	-	GTP-binding elongation factor family protein
2233	 31.08	+1	2315612..2316808	+	398	157738503	-	Abu_2309	-	putative inner membrane protein
2234	 30.00	0	2316819..2317058	+	79	157738504	-	Abu_2310	-	hypothetical protein
2235	 28.22	0	2317080..2317568	-	162	157738505	-	Abu_2311	-	hypothetical protein
2236	 24.18	0	2317578..2317883	-	101	157738506	-	Abu_2312	-	hypothetical protein
2237	 27.41	0	2317880..2319466	-	528	157738507	-	Abu_2313	-	hypothetical protein
2238	 30.18	0	2319516..2321864	-	782	157738508	-	Abu_2314	-	TonB-dependent receptor protein
2239	 21.84	-1	2321963..2322910	-	315	157738509	-	Abu_2315	-	sigma factor regulatory protein FecR/PupR family
2240	 24.58	0	2322900..2323379	-	159	157738510	-	Abu_2316	-	ECF subfamily RNA polymerase sigma factor
2241	 24.37	0	2323547..2326915	+	1122	157738511	-	Abu_2317	-	GGDEF/PAS domain-containing protein
2242	 24.72	0	2326992..2328617	+	541	157738512	-	Abu_2318	-	sulfatase
2243	 25.38	0	2328595..2329311	+	238	157738513	-	Abu_2319	-	PAP2 superfamily protein
2244	 25.62	0	2329407..2329808	+	133	157738514	-	Abu_2320	-	cytochrome c-type protein, putative
2245	 28.21	0	2329818..2330324	+	168	157738515	-	Abu_2321	-	diheme cytochrome c precursor, putative
2246	 25.97	0	2330334..2331107	+	257	157738516	-	Abu_2322	-	cytochrome b, putative
2247	 25.93	0	2331127..2331450	+	107	157738517	-	Abu_2323	-	hypothetical protein
2248	 19.90	-2	2331410..2331796	+	128	157738518	-	Abu_2324	-	hypothetical protein
2249	 24.92	0	2331789..2332454	+	221	157738519	-	Abu_2325	-	two-component response regulator
2250	 22.67	-1	2332456..2333646	+	396	157738520	-	Abu_2326	-	two-component sensor histidine kinase
2251	 25.87	0	2333641..2334390	-	249	157738521	-	Abu_2327	-	methyltransferase
2252	 21.60	-1	2334454..2335305	-	283	157738522	-	Abu_2328	-	AraC family transcriptional regulator
2253	 24.46	0	2335317..2336894	-	525	157738523	-	Abu_2329	-	HD_GYP domain-containing response regulator
2254	 29.11	0	2337020..2337847	+	275	157738524	thyX	Abu_2330	-	thymidylate synthase ThyX
2255	 29.52	0	2337847..2338764	+	305	157738525	glsA	Abu_2331	-	glutaminase A
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.