IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2112	 25.25	0	2181763..2182257	-	164	157738382	cobP	Abu_2182	-	bifunctional cobinamide kinase / cobinamide phosphate guanylyltransferase
2113	 22.93	-1	2182285..2182947	-	220	157738383	-	Abu_2183	-	lipolytic protein
2114	 28.65	0	2182949..2184016	-	355	157738384	-	Abu_2184	-	hypothetical protein
2115	 34.40	+2	2184155..2185561	+	468	157738385	-	Abu_2185	-	sodium:sulfate symporter family protein
2116	 24.77	0	2185591..2186337	-	248	157738386	-	Abu_2186	-	hypothetical protein
2117	 27.47	0	2186381..2188138	-	585	157738387	dsbD	Abu_2187	-	thiol:disulfide interchange protein DsbD
2118	 32.37	+1	2188138..2189067	-	309	157738388	rimK	Abu_2188	-	ribosomal protein S6 modification protein
2119	 26.71	0	2189079..2189501	-	140	157738389	-	Abu_2189	-	hypothetical protein
2120	 28.89	0	2189551..2189775	-	74	157738390	-	Abu_2190	-	hypothetical protein
2121	 22.83	-1	2189837..2191207	-	456	157738391	-	Abu_2191	-	EAL/GGDEF domain-containing protein
2122	 25.37	0	2191182..2191985	-	267	157738392	psd	Abu_2192	-	phosphatidylserine decarboxylase
2123	 20.99	-1	2192091..2192333	+	80	157738393	-	Abu_2193	-	hypothetical protein
2124	 27.55	0	2192344..2193432	-	362	157738394	mltA	Abu_2194	-	peptidoglycan N-acetylmuramoylhydrolase
2125	 32.17	+1	2193495..2195381	-	628	157738395	dnaK	Abu_2195	-	molecular chaperone DnaK
2126	 28.67	0	2195570..2196127	-	185	157738396	grpE	Abu_2196	-	heat shock protein GrpE
2127	 24.12	0	2196137..2196928	-	263	157738397	hrcA	Abu_2197	-	putative heat shock regulator
2128	 24.14	0	2197044..2197685	-	213	157738398	-	Abu_2198	-	hypothetical protein
2129	 23.51	0	2197689..2198411	-	240	157738399	truA	Abu_2199	-	tRNA pseudouridine synthase A
2130	 23.40	-1	2198418..2199434	-	338	157738400	-	Abu_2200	-	hypothetical protein
2131	 22.39	-1	2199434..2200027	-	197	157738401	-	Abu_2201	-	A24 family peptidase
2132	 29.36	0	2199987..2200691	-	234	157738402	uppS	Abu_2202	-	undecaprenyl pyrophosphate synthetase
2133	 26.63	0	2200678..2201901	-	407	157738403	dfp	Abu_2203	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2134	 29.33	0	2201904..2203202	-	432	157738404	glmU	Abu_2204	-	bifunctional UDP-N-acetylglucosamine pyrophosphorylase
2135	 24.51	0	2203205..2205142	-	645	157738405	-	Abu_2205	-	ankyrin repeat-containing protein
2136	 27.65	0	2205184..2206818	-	544	157738406	-	Abu_2206	-	ATP-dependent RNA helicase
2137	 24.38	0	2206842..2207969	+	375	157738407	trmA	Abu_2207	-	tRNA (uracil-5-)-methyltransferase
2138	 26.12	0	2207980..2208561	-	193	157738408	-	Abu_2208	-	hypothetical protein
2139	 30.83	+1	2209876..2211753	-	625	157738409	gidA	Abu_2210	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2140	 27.78	0	2211898..2212509	+	203	157738410	ribE	Abu_2211	-	riboflavin synthase subunit alpha
2141	 26.02	0	2212503..2213309	-	268	157738411	mreC	Abu_2212	-	rod shape-determining protein MreC
2142	 32.66	+1	2213314..2214357	-	347	157738412	mreB	Abu_2213	-	rod shape-determining protein MreB
2143	 28.35	0	2214361..2215584	-	407	157738413	clpX	Abu_2214	-	ATP-dependent protease ATP-binding subunit
2144	 29.63	0	2215595..2216377	-	260	157738414	lpxA	Abu_2215	-	UDP-N-acetylglucosamine acyltransferase
2145	 31.08	+1	2216387..2216830	-	147	157738415	fabZ	Abu_2216	-	3-hydroxymyristoyl-(acyl carrier protein) dehydratase
2146	 27.30	0	2216928..2217971	-	347	157738416	lpxB	Abu_2217	-	lipid-A-disaccharide synthase
2147	 27.09	0	2217968..2219041	-	357	157738417	-	Abu_2218	-	hypothetical protein
2148	 22.46	-1	2219226..2219501	+	91	157738418	-	Abu_2219	-	hypothetical protein
2149	 28.43	0	2219510..2220712	-	400	157738419	ndh	Abu_2220	-	NADH dehydrogenase
2150	 30.13	0	2220918..2221760	+	280	157738420	nfo	Abu_2221	-	endonuclease IV
2151	 25.85	0	2221775..2223163	-	462	157738421	-	Abu_2222	-	outer membrane efflux lipoprotein
2152	 29.36	0	2223156..2226323	-	1055	157738422	-	Abu_2223	-	Acr family multidrug efflux protein
2153	 25.45	0	2226320..2227474	-	384	157738423	-	Abu_2224	-	HlyD family multidrug efflux protein
2154	 22.96	-1	2227583..2228122	+	179	157738424	-	Abu_2225	-	TetR family transcriptional regulator
2155	 25.86	0	2228197..2229387	+	396	157738425	-	Abu_2226	-	major facilitator transporter
2156	 28.29	0	2229392..2231017	-	541	157738426	-	Abu_2227	-	sulfate permease family protein
2157	 25.31	0	2231076..2231723	-	215	157738427	-	Abu_2228	-	hypothetical protein
2158	 28.04	0	2231724..2232347	-	207	157738428	-	Abu_2229	-	hypothetical protein
2159	 18.30	-2	2232419..2232817	+	132	157738429	-	Abu_2230	-	hypothetical protein
2160	 26.24	0	2232814..2234547	+	577	157738430	-	Abu_2231	-	AAA ATPase family protein
2161	 22.98	-1	2234557..2235348	+	263	157738431	-	Abu_2232	-	hypothetical protein
2162	 29.77	0	2235352..2236221	+	289	157738432	-	Abu_2233	-	hypothetical protein
2163	 26.31	0	2236218..2237000	+	260	157738433	murB	Abu_2234	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2164	 30.43	0	2237216..2239486	+	756	157738434	topA	Abu_2235	-	DNA topoisomerase I
2165	 25.34	0	2239486..2239998	+	170	157738435	-	Abu_2236	-	hypothetical protein
2166	 30.86	+1	2239988..2240836	+	282	157738436	bioB	Abu_2237	-	biotin synthase
2167	 26.44	0	2240859..2241569	-	236	157738437	-	Abu_2238	-	hypothetical protein
2168	 28.05	0	2241566..2241811	-	81	157738438	-	Abu_2239	-	hypothetical protein
2169	 31.77	+1	2241815..2243095	-	426	157738439	eno	Abu_2240	-	enolase
2170	 32.29	+1	2243216..2244265	-	349	157738440	recA	Abu_2241	-	recombinase A
2171	 23.08	-1	2244366..2244560	-	64	157738441	-	Abu_2242	-	hypothetical protein
2172	 29.41	0	2244685..2245677	+	330	157738442	pseB	Abu_2243	-	UDP GlcNAc dehydratase/reductase PseB, putative
2173	 25.46	0	2245674..2246804	+	376	157738443	-	Abu_2244	-	DegT/DnrJ/EryC1/StrS aminotransferase
2174	 29.90	0	2246797..2247495	+	232	157738444	neuA	Abu_2245	-	acylneuraminate cytidylyltransferase
2175	 28.46	0	2247492..2248517	+	341	157738445	neuB	Abu_2246	-	N-acetylneuraminic acid synthetase
2176	 25.61	0	2248514..2249536	+	340	157738446	-	Abu_2247	-	glycosyltransferase
2177	 20.25	-1	2249523..2250386	+	287	157738447	-	Abu_2248	-	hypothetical protein
2178	 22.37	-1	2250389..2251054	+	221	157738448	flmE	Abu_2249	-	flagellin modification protein FlmE
2179	 26.20	0	2251036..2252157	+	373	157738449	-	Abu_2250	-	ATP-grasp domain-containing protein
2180	 23.37	-1	2252154..2253026	+	290	157738450	-	Abu_2251	-	hypothetical protein
2181	 26.57	0	2253047..2253667	+	206	157738451	-	Abu_2252	-	hypothetical protein
2182	 22.99	-1	2253682..2255712	+	676	157738452	-	Abu_2253	-	hypothetical protein
2183	 33.98	+2	2255759..2256682	-	307	157738453	flaA	Abu_2254	-	flagellin
2184	 33.44	+1	2256842..2257765	-	307	157738454	flaB	Abu_2255	-	flagellin
2185	 27.33	0	2258098..2259480	+	460	157738455	-	Abu_2256	-	4Fe-4S ferredoxin, iron-sulfur binding
2186	 30.49	+1	2259594..2261210	+	538	157738456	pyrG	Abu_2257	-	CTP synthetase
2187	 25.43	0	2261210..2262778	+	522	157738457	recJ	Abu_2258	-	single-stranded DNA-specific exonuclease
2188	 23.38	-1	2262773..2263375	-	200	157738458	-	Abu_2259	-	hypothetical protein
2189	 27.78	0	2263380..2264009	-	209	157738459	-	Abu_2260	-	hypothetical protein
2190	 27.04	0	2264130..2264669	+	179	157738460	thiJ	Abu_2261	-	4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein ThiJ
2191	 29.77	0	2264743..2268306	+	1187	157738461	dnaE	Abu_2262	-	DNA polymerase III subunit alpha
2192	 28.90	0	2268281..2269069	+	262	157738462	surE	Abu_2263	-	stationary phase survival protein SurE
2193	 23.70	0	2269087..2269356	+	89	157738463	-	Abu_2264	-	hypothetical protein
2194	 25.00	0	2269366..2269629	-	87	157738464	-	Abu_2265	-	hypothetical protein
2195	 30.15	0	2269632..2270102	-	156	157738465	moaC	Abu_2266	-	molybdenum cofactor biosynthesis protein C
2196	 27.48	0	2270208..2270429	+	73	157738466	rpsU	Abu_2267	-	30S ribosomal protein S21
2197	 28.77	0	2276717..2277418	+	233	157738467	-	Abu_2273	-	hypothetical protein
2198	 25.00	0	2277452..2277859	+	135	157738468	-	Abu_2274	-	hypothetical protein
2199	 22.51	-1	2277811..2278503	-	230	157738469	-	Abu_2275	-	putative methyltransferase
2200	 33.05	+1	2278590..2278937	+	115	157738470	secG	Abu_2276	-	protein-export membrane protein SecG
2201	 26.70	0	2278998..2279555	+	185	157738471	frr	Abu_2277	-	ribosome recycling factor
2202	 33.82	+1	2279552..2280166	+	204	157738472	pyrE	Abu_2278	-	orotate phosphoribosyltransferase
2203	 26.46	0	2280166..2280645	+	159	157738473	-	Abu_2279	-	hypothetical protein
2204	 25.58	0	2280645..2281727	+	360	157738474	-	Abu_2280	-	major facilitator transporter
2205	 26.92	0	2281724..2282689	-	321	157738475	-	Abu_2281	-	CorA-like Mg2+ transporter protein
2206	 22.90	-1	2282700..2283437	-	245	157738476	-	Abu_2282	-	hypothetical protein
2207	 26.34	0	2283521..2283892	-	123	157738477	-	Abu_2283	-	competence protein ComEA
2208	 27.97	0	2283959..2284741	-	260	157738478	-	Abu_2284	-	hypothetical protein
2209	 26.99	0	2284914..2286032	+	372	157738479	-	Abu_2285	-	metallophosphoesterase
2210	 27.18	0	2286088..2286981	-	297	157738480	-	Abu_2286	-	hypothetical protein
2211	 29.63	0	2287006..2289111	-	701	157738481	-	Abu_2287	-	TonB-dependent receptor protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.