IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2076	 22.99	-1	2138858..2139205	+	115	157738346	-	Abu_2146	-	hypothetical protein
2077	 27.47	0	2139206..2139853	-	215	157738347	ung	Abu_2147	-	uracil-DNA glycosylase
2078	 34.34	+2	2139970..2141361	-	463	157738348	-	Abu_2148	-	aldehyde dehydrogenase family protein
2079	 32.12	+1	2141382..2143028	-	548	157738349	ilvB	Abu_2149	-	acetolactate synthase
2080	 27.75	0	2143265..2143855	+	196	157738350	lemA	Abu_2150	-	LemA protein
2081	 22.71	-1	2143855..2144475	+	206	157738351	-	Abu_2151	-	hypothetical protein
2082	 26.22	0	2144472..2145371	+	299	157738352	-	Abu_2152	-	hypothetical protein
2083	 26.49	0	2145340..2146011	+	223	157738353	gph	Abu_2153	-	phosphoglycolate phosphatase
2084	 28.31	0	2146100..2146537	+	145	157738354	-	Abu_2154	-	DNA-binding ferritin-like protein (Dps/NapA)
2085	 21.90	-1	2146583..2148217	-	544	157738355	-	Abu_2155	-	hypothetical protein
2086	 31.22	+1	2148218..2148595	-	125	157738356	-	Abu_2156	-	hypothetical protein
2087	 26.28	0	2148823..2149914	+	363	157738357	-	Abu_2157	-	major facilitator superfamily transporter
2088	 23.53	0	2149922..2150278	-	118	157738358	-	Abu_2158	-	hypothetical protein
2089	 23.02	-1	2150374..2152119	+	581	157738359	-	Abu_2159	-	GGDEF/HAMP domain-containing protein
2090	 27.53	0	2152186..2153322	+	378	157738360	-	Abu_2160	-	HlyD family multidrug efflux protein
2091	 31.06	+1	2153326..2156451	+	1041	157738361	-	Abu_2161	-	AcrB/AcrD/AcrF family multidrug efflux protein
2092	 28.12	0	2156444..2157844	+	466	157738362	-	Abu_2162	-	RND efflux system, outer membrane lipoprotein
2093	 30.80	+1	2157975..2160305	-	776	157738363	-	Abu_2163	-	TonB-dependent receptor protein
2094	 24.76	0	2160457..2161413	-	318	157738364	-	Abu_2164	-	sigma factor regulatory protein FecR/PupR family
2095	 26.25	0	2161403..2161882	-	159	157738365	-	Abu_2165	-	ECF subfamily RNA polymerase sigma factor
2096	 23.87	0	2162024..2163133	-	369	157738366	-	Abu_2166	-	hypothetical protein
2097	 30.33	0	2163133..2164362	-	409	157738367	-	Abu_2167	-	HI0933-like protein
2098	 22.64	-1	2164373..2164690	-	105	157738368	-	Abu_2168	-	hypothetical protein
2099	 30.90	+1	2164898..2166169	+	423	157738369	metY	Abu_2169	-	O-acetylhomoserine sulfhydrylase
2100	 27.54	0	2166176..2166589	+	137	157738370	iscR	Abu_2170	-	BadM/Rrf2 family transcriptional regulator
2101	 34.41	+2	2166620..2167552	+	310	157738371	cysK1	Abu_2171	-	cysteine synthase
2102	 29.87	0	2167586..2167816	+	76	157738372	-	Abu_2172	-	hypothetical protein
2103	 28.79	0	2167825..2168529	+	234	157738373	cysH	Abu_2173	-	phosphoadenosine phosphosulfate reductase
2104	 32.13	+1	2168546..2169457	+	303	157738374	cysD	Abu_2174	-	sulfate adenylyltransferase subunit 2
2105	 27.94	0	2169459..2170868	+	469	157738375	cysNC	Abu_2175	-	bifunctional ATP sulfurylase, subunit 1/adenylyl-sulfate kinase
2106	 24.36	0	2170878..2171969	+	363	157738376	cysI	Abu_2176	-	sulfite reductase, iron-sulfur subunit
2107	 22.56	-1	2171982..2173280	+	432	157738377	-	Abu_2177	-	hypothetical protein
2108	 29.26	0	2173366..2174667	+	433	157738378	-	Abu_2178	-	aminotransferase, NifS-like protein
2109	 30.98	+1	2174711..2180311	-	1866	157738379	-	Abu_2179	-	hypothetical protein
2110	 21.62	-1	2180415..2181020	-	201	157738380	-	Abu_2180	-	hypothetical protein
2111	 23.96	0	2181020..2181766	-	248	157738381	cobS	Abu_2181	-	cobalamin (vitamin B12) synthase
2112	 25.25	0	2181763..2182257	-	164	157738382	cobP	Abu_2182	-	bifunctional cobinamide kinase / cobinamide phosphate guanylyltransferase
2113	 22.93	-1	2182285..2182947	-	220	157738383	-	Abu_2183	-	lipolytic protein
2114	 28.65	0	2182949..2184016	-	355	157738384	-	Abu_2184	-	hypothetical protein
2115	 34.40	+2	2184155..2185561	+	468	157738385	-	Abu_2185	-	sodium:sulfate symporter family protein
2116	 24.77	0	2185591..2186337	-	248	157738386	-	Abu_2186	-	hypothetical protein
2117	 27.47	0	2186381..2188138	-	585	157738387	dsbD	Abu_2187	-	thiol:disulfide interchange protein DsbD
2118	 32.37	+1	2188138..2189067	-	309	157738388	rimK	Abu_2188	-	ribosomal protein S6 modification protein
2119	 26.71	0	2189079..2189501	-	140	157738389	-	Abu_2189	-	hypothetical protein
2120	 28.89	0	2189551..2189775	-	74	157738390	-	Abu_2190	-	hypothetical protein
2121	 22.83	-1	2189837..2191207	-	456	157738391	-	Abu_2191	-	EAL/GGDEF domain-containing protein
2122	 25.37	0	2191182..2191985	-	267	157738392	psd	Abu_2192	-	phosphatidylserine decarboxylase
2123	 20.99	-1	2192091..2192333	+	80	157738393	-	Abu_2193	-	hypothetical protein
2124	 27.55	0	2192344..2193432	-	362	157738394	mltA	Abu_2194	-	peptidoglycan N-acetylmuramoylhydrolase
2125	 32.17	+1	2193495..2195381	-	628	157738395	dnaK	Abu_2195	-	molecular chaperone DnaK
2126	 28.67	0	2195570..2196127	-	185	157738396	grpE	Abu_2196	-	heat shock protein GrpE
2127	 24.12	0	2196137..2196928	-	263	157738397	hrcA	Abu_2197	-	putative heat shock regulator
2128	 24.14	0	2197044..2197685	-	213	157738398	-	Abu_2198	-	hypothetical protein
2129	 23.51	0	2197689..2198411	-	240	157738399	truA	Abu_2199	-	tRNA pseudouridine synthase A
2130	 23.40	-1	2198418..2199434	-	338	157738400	-	Abu_2200	-	hypothetical protein
2131	 22.39	-1	2199434..2200027	-	197	157738401	-	Abu_2201	-	A24 family peptidase
2132	 29.36	0	2199987..2200691	-	234	157738402	uppS	Abu_2202	-	undecaprenyl pyrophosphate synthetase
2133	 26.63	0	2200678..2201901	-	407	157738403	dfp	Abu_2203	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2134	 29.33	0	2201904..2203202	-	432	157738404	glmU	Abu_2204	-	bifunctional UDP-N-acetylglucosamine pyrophosphorylase
2135	 24.51	0	2203205..2205142	-	645	157738405	-	Abu_2205	-	ankyrin repeat-containing protein
2136	 27.65	0	2205184..2206818	-	544	157738406	-	Abu_2206	-	ATP-dependent RNA helicase
2137	 24.38	0	2206842..2207969	+	375	157738407	trmA	Abu_2207	-	tRNA (uracil-5-)-methyltransferase
2138	 26.12	0	2207980..2208561	-	193	157738408	-	Abu_2208	-	hypothetical protein
2139	 30.83	+1	2209876..2211753	-	625	157738409	gidA	Abu_2210	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2140	 27.78	0	2211898..2212509	+	203	157738410	ribE	Abu_2211	-	riboflavin synthase subunit alpha
2141	 26.02	0	2212503..2213309	-	268	157738411	mreC	Abu_2212	-	rod shape-determining protein MreC
2142	 32.66	+1	2213314..2214357	-	347	157738412	mreB	Abu_2213	-	rod shape-determining protein MreB
2143	 28.35	0	2214361..2215584	-	407	157738413	clpX	Abu_2214	-	ATP-dependent protease ATP-binding subunit
2144	 29.63	0	2215595..2216377	-	260	157738414	lpxA	Abu_2215	-	UDP-N-acetylglucosamine acyltransferase
2145	 31.08	+1	2216387..2216830	-	147	157738415	fabZ	Abu_2216	-	3-hydroxymyristoyl-(acyl carrier protein) dehydratase
2146	 27.30	0	2216928..2217971	-	347	157738416	lpxB	Abu_2217	-	lipid-A-disaccharide synthase
2147	 27.09	0	2217968..2219041	-	357	157738417	-	Abu_2218	-	hypothetical protein
2148	 22.46	-1	2219226..2219501	+	91	157738418	-	Abu_2219	-	hypothetical protein
2149	 28.43	0	2219510..2220712	-	400	157738419	ndh	Abu_2220	-	NADH dehydrogenase
2150	 30.13	0	2220918..2221760	+	280	157738420	nfo	Abu_2221	-	endonuclease IV
2151	 25.85	0	2221775..2223163	-	462	157738421	-	Abu_2222	-	outer membrane efflux lipoprotein
2152	 29.36	0	2223156..2226323	-	1055	157738422	-	Abu_2223	-	Acr family multidrug efflux protein
2153	 25.45	0	2226320..2227474	-	384	157738423	-	Abu_2224	-	HlyD family multidrug efflux protein
2154	 22.96	-1	2227583..2228122	+	179	157738424	-	Abu_2225	-	TetR family transcriptional regulator
2155	 25.86	0	2228197..2229387	+	396	157738425	-	Abu_2226	-	major facilitator transporter
2156	 28.29	0	2229392..2231017	-	541	157738426	-	Abu_2227	-	sulfate permease family protein
2157	 25.31	0	2231076..2231723	-	215	157738427	-	Abu_2228	-	hypothetical protein
2158	 28.04	0	2231724..2232347	-	207	157738428	-	Abu_2229	-	hypothetical protein
2159	 18.30	-2	2232419..2232817	+	132	157738429	-	Abu_2230	-	hypothetical protein
2160	 26.24	0	2232814..2234547	+	577	157738430	-	Abu_2231	-	AAA ATPase family protein
2161	 22.98	-1	2234557..2235348	+	263	157738431	-	Abu_2232	-	hypothetical protein
2162	 29.77	0	2235352..2236221	+	289	157738432	-	Abu_2233	-	hypothetical protein
2163	 26.31	0	2236218..2237000	+	260	157738433	murB	Abu_2234	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2164	 30.43	0	2237216..2239486	+	756	157738434	topA	Abu_2235	-	DNA topoisomerase I
2165	 25.34	0	2239486..2239998	+	170	157738435	-	Abu_2236	-	hypothetical protein
2166	 30.86	+1	2239988..2240836	+	282	157738436	bioB	Abu_2237	-	biotin synthase
2167	 26.44	0	2240859..2241569	-	236	157738437	-	Abu_2238	-	hypothetical protein
2168	 28.05	0	2241566..2241811	-	81	157738438	-	Abu_2239	-	hypothetical protein
2169	 31.77	+1	2241815..2243095	-	426	157738439	eno	Abu_2240	-	enolase
2170	 32.29	+1	2243216..2244265	-	349	157738440	recA	Abu_2241	-	recombinase A
2171	 23.08	-1	2244366..2244560	-	64	157738441	-	Abu_2242	-	hypothetical protein
2172	 29.41	0	2244685..2245677	+	330	157738442	pseB	Abu_2243	-	UDP GlcNAc dehydratase/reductase PseB, putative
2173	 25.46	0	2245674..2246804	+	376	157738443	-	Abu_2244	-	DegT/DnrJ/EryC1/StrS aminotransferase
2174	 29.90	0	2246797..2247495	+	232	157738444	neuA	Abu_2245	-	acylneuraminate cytidylyltransferase
2175	 28.46	0	2247492..2248517	+	341	157738445	neuB	Abu_2246	-	N-acetylneuraminic acid synthetase
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.