IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2046	 29.57	0	2112651..2113022	+	123	157738316	dksA	Abu_2116	-	DnaK suppressor protein DksA
2047	 24.72	0	2113019..2114017	+	332	157738317	-	Abu_2117	-	tRNA pseudouridine synthase
2048	 24.39	0	2114051..2115034	-	327	157738318	-	Abu_2118	-	hypothetical protein
2049	 23.49	0	2115044..2115622	-	192	157738319	-	Abu_2119	-	hypothetical protein
2050	 28.07	0	2115740..2117050	+	436	157738320	ctpA	Abu_2120	-	carboxyl-terminal protease family protein
2051	 27.46	0	2117062..2118015	+	317	157738321	purC	Abu_2121	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2052	 26.42	0	2118072..2118317	+	81	157738322	purS	Abu_2122	-	phosphoribosylformylglycinamidine synthetase
2053	 27.38	0	2118319..2118990	+	223	157738323	purQ	Abu_2123	-	phosphoribosylformylglycinamidine synthase subunit I
2054	 23.53	0	2119019..2120089	+	356	157738324	-	Abu_2124	-	hypothetical protein
2055	 29.99	0	2120076..2120762	+	228	157738325	plsC	Abu_2125	-	1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC
2056	 27.65	0	2120734..2121138	+	134	157738326	crcB	Abu_2126	-	camphor resistance CrcB protein
2057	 29.33	0	2121205..2121429	+	74	157738327	-	Abu_2127	-	twin arginine-targeting protein translocase
2058	 29.11	0	2121450..2121686	+	78	157738328	-	Abu_2128	-	twin arginine-targeting protein translocase
2059	 26.29	0	2121696..2123285	+	529	157738329	argS	Abu_2129	-	arginyl-tRNA synthetase
2060	 23.24	-1	2123300..2123626	-	108	157738330	-	Abu_2130	-	hypothetical protein
2061	 23.50	0	2123623..2124171	-	182	157738331	nadD	Abu_2131	-	nicotinate (nicotinamide) nucleotide adenylyltransferase
2062	 33.63	+1	2124262..2125257	+	331	157738332	gapA	Abu_2132	-	glyceraldehyde 3-phosphate dehydrogenase A
2063	 31.84	+1	2125275..2126477	+	400	157738333	pgk	Abu_2133	-	phosphoglycerate kinase
2064	 26.02	0	2126477..2127187	+	236	157738334	tpiA	Abu_2134	-	triosephosphate isomerase
2065	 31.27	+1	2127189..2128010	+	273	157738335	fabI	Abu_2135	-	enoyl-(acyl carrier protein) reductase
2066	 27.13	0	2128106..2129314	+	402	157738336	lysA	Abu_2136	-	diaminopimelate decarboxylase
2067	 26.48	0	2129326..2130405	+	359	157738337	pheA	Abu_2137	-	bifunctional chorismate mutase/prephenate dehydratase
2068	 26.90	0	2130417..2131520	+	367	157738338	hisC	Abu_2138	-	histidinol-phosphate aminotransferase
2069	 29.96	0	2131532..2133337	+	601	157738339	dxs	Abu_2139	-	1-deoxy-D-xylulose-5-phosphate synthase
2070	 31.67	+1	2133488..2134507	+	339	157738340	-	Abu_2140	-	cytochrome c551 peroxidase
2071	 28.21	0	2134536..2135081	-	181	157738341	-	Abu_2141	-	Maf-like protein
2072	 26.50	0	2135164..2136114	+	316	157738342	-	Abu_2142	-	ketopantoate reductase
2073	 24.03	0	2136111..2137400	+	429	157738343	-	Abu_2143	-	hypothetical protein
2074	 27.89	0	2137459..2138046	-	195	157738344	-	Abu_2144	-	lipoprotein NlpC
2075	 21.56	-1	2138121..2138774	-	217	157738345	-	Abu_2145	-	CRP/FNR family transcriptional regulator
2076	 22.99	-1	2138858..2139205	+	115	157738346	-	Abu_2146	-	hypothetical protein
2077	 27.47	0	2139206..2139853	-	215	157738347	ung	Abu_2147	-	uracil-DNA glycosylase
2078	 34.34	+2	2139970..2141361	-	463	157738348	-	Abu_2148	-	aldehyde dehydrogenase family protein
2079	 32.12	+1	2141382..2143028	-	548	157738349	ilvB	Abu_2149	-	acetolactate synthase
2080	 27.75	0	2143265..2143855	+	196	157738350	lemA	Abu_2150	-	LemA protein
2081	 22.71	-1	2143855..2144475	+	206	157738351	-	Abu_2151	-	hypothetical protein
2082	 26.22	0	2144472..2145371	+	299	157738352	-	Abu_2152	-	hypothetical protein
2083	 26.49	0	2145340..2146011	+	223	157738353	gph	Abu_2153	-	phosphoglycolate phosphatase
2084	 28.31	0	2146100..2146537	+	145	157738354	-	Abu_2154	-	DNA-binding ferritin-like protein (Dps/NapA)
2085	 21.90	-1	2146583..2148217	-	544	157738355	-	Abu_2155	-	hypothetical protein
2086	 31.22	+1	2148218..2148595	-	125	157738356	-	Abu_2156	-	hypothetical protein
2087	 26.28	0	2148823..2149914	+	363	157738357	-	Abu_2157	-	major facilitator superfamily transporter
2088	 23.53	0	2149922..2150278	-	118	157738358	-	Abu_2158	-	hypothetical protein
2089	 23.02	-1	2150374..2152119	+	581	157738359	-	Abu_2159	-	GGDEF/HAMP domain-containing protein
2090	 27.53	0	2152186..2153322	+	378	157738360	-	Abu_2160	-	HlyD family multidrug efflux protein
2091	 31.06	+1	2153326..2156451	+	1041	157738361	-	Abu_2161	-	AcrB/AcrD/AcrF family multidrug efflux protein
2092	 28.12	0	2156444..2157844	+	466	157738362	-	Abu_2162	-	RND efflux system, outer membrane lipoprotein
2093	 30.80	+1	2157975..2160305	-	776	157738363	-	Abu_2163	-	TonB-dependent receptor protein
2094	 24.76	0	2160457..2161413	-	318	157738364	-	Abu_2164	-	sigma factor regulatory protein FecR/PupR family
2095	 26.25	0	2161403..2161882	-	159	157738365	-	Abu_2165	-	ECF subfamily RNA polymerase sigma factor
2096	 23.87	0	2162024..2163133	-	369	157738366	-	Abu_2166	-	hypothetical protein
2097	 30.33	0	2163133..2164362	-	409	157738367	-	Abu_2167	-	HI0933-like protein
2098	 22.64	-1	2164373..2164690	-	105	157738368	-	Abu_2168	-	hypothetical protein
2099	 30.90	+1	2164898..2166169	+	423	157738369	metY	Abu_2169	-	O-acetylhomoserine sulfhydrylase
2100	 27.54	0	2166176..2166589	+	137	157738370	iscR	Abu_2170	-	BadM/Rrf2 family transcriptional regulator
2101	 34.41	+2	2166620..2167552	+	310	157738371	cysK1	Abu_2171	-	cysteine synthase
2102	 29.87	0	2167586..2167816	+	76	157738372	-	Abu_2172	-	hypothetical protein
2103	 28.79	0	2167825..2168529	+	234	157738373	cysH	Abu_2173	-	phosphoadenosine phosphosulfate reductase
2104	 32.13	+1	2168546..2169457	+	303	157738374	cysD	Abu_2174	-	sulfate adenylyltransferase subunit 2
2105	 27.94	0	2169459..2170868	+	469	157738375	cysNC	Abu_2175	-	bifunctional ATP sulfurylase, subunit 1/adenylyl-sulfate kinase
2106	 24.36	0	2170878..2171969	+	363	157738376	cysI	Abu_2176	-	sulfite reductase, iron-sulfur subunit
2107	 22.56	-1	2171982..2173280	+	432	157738377	-	Abu_2177	-	hypothetical protein
2108	 29.26	0	2173366..2174667	+	433	157738378	-	Abu_2178	-	aminotransferase, NifS-like protein
2109	 30.98	+1	2174711..2180311	-	1866	157738379	-	Abu_2179	-	hypothetical protein
2110	 21.62	-1	2180415..2181020	-	201	157738380	-	Abu_2180	-	hypothetical protein
2111	 23.96	0	2181020..2181766	-	248	157738381	cobS	Abu_2181	-	cobalamin (vitamin B12) synthase
2112	 25.25	0	2181763..2182257	-	164	157738382	cobP	Abu_2182	-	bifunctional cobinamide kinase / cobinamide phosphate guanylyltransferase
2113	 22.93	-1	2182285..2182947	-	220	157738383	-	Abu_2183	-	lipolytic protein
2114	 28.65	0	2182949..2184016	-	355	157738384	-	Abu_2184	-	hypothetical protein
2115	 34.40	+2	2184155..2185561	+	468	157738385	-	Abu_2185	-	sodium:sulfate symporter family protein
2116	 24.77	0	2185591..2186337	-	248	157738386	-	Abu_2186	-	hypothetical protein
2117	 27.47	0	2186381..2188138	-	585	157738387	dsbD	Abu_2187	-	thiol:disulfide interchange protein DsbD
2118	 32.37	+1	2188138..2189067	-	309	157738388	rimK	Abu_2188	-	ribosomal protein S6 modification protein
2119	 26.71	0	2189079..2189501	-	140	157738389	-	Abu_2189	-	hypothetical protein
2120	 28.89	0	2189551..2189775	-	74	157738390	-	Abu_2190	-	hypothetical protein
2121	 22.83	-1	2189837..2191207	-	456	157738391	-	Abu_2191	-	EAL/GGDEF domain-containing protein
2122	 25.37	0	2191182..2191985	-	267	157738392	psd	Abu_2192	-	phosphatidylserine decarboxylase
2123	 20.99	-1	2192091..2192333	+	80	157738393	-	Abu_2193	-	hypothetical protein
2124	 27.55	0	2192344..2193432	-	362	157738394	mltA	Abu_2194	-	peptidoglycan N-acetylmuramoylhydrolase
2125	 32.17	+1	2193495..2195381	-	628	157738395	dnaK	Abu_2195	-	molecular chaperone DnaK
2126	 28.67	0	2195570..2196127	-	185	157738396	grpE	Abu_2196	-	heat shock protein GrpE
2127	 24.12	0	2196137..2196928	-	263	157738397	hrcA	Abu_2197	-	putative heat shock regulator
2128	 24.14	0	2197044..2197685	-	213	157738398	-	Abu_2198	-	hypothetical protein
2129	 23.51	0	2197689..2198411	-	240	157738399	truA	Abu_2199	-	tRNA pseudouridine synthase A
2130	 23.40	-1	2198418..2199434	-	338	157738400	-	Abu_2200	-	hypothetical protein
2131	 22.39	-1	2199434..2200027	-	197	157738401	-	Abu_2201	-	A24 family peptidase
2132	 29.36	0	2199987..2200691	-	234	157738402	uppS	Abu_2202	-	undecaprenyl pyrophosphate synthetase
2133	 26.63	0	2200678..2201901	-	407	157738403	dfp	Abu_2203	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
2134	 29.33	0	2201904..2203202	-	432	157738404	glmU	Abu_2204	-	bifunctional UDP-N-acetylglucosamine pyrophosphorylase
2135	 24.51	0	2203205..2205142	-	645	157738405	-	Abu_2205	-	ankyrin repeat-containing protein
2136	 27.65	0	2205184..2206818	-	544	157738406	-	Abu_2206	-	ATP-dependent RNA helicase
2137	 24.38	0	2206842..2207969	+	375	157738407	trmA	Abu_2207	-	tRNA (uracil-5-)-methyltransferase
2138	 26.12	0	2207980..2208561	-	193	157738408	-	Abu_2208	-	hypothetical protein
2139	 30.83	+1	2209876..2211753	-	625	157738409	gidA	Abu_2210	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2140	 27.78	0	2211898..2212509	+	203	157738410	ribE	Abu_2211	-	riboflavin synthase subunit alpha
2141	 26.02	0	2212503..2213309	-	268	157738411	mreC	Abu_2212	-	rod shape-determining protein MreC
2142	 32.66	+1	2213314..2214357	-	347	157738412	mreB	Abu_2213	-	rod shape-determining protein MreB
2143	 28.35	0	2214361..2215584	-	407	157738413	clpX	Abu_2214	-	ATP-dependent protease ATP-binding subunit
2144	 29.63	0	2215595..2216377	-	260	157738414	lpxA	Abu_2215	-	UDP-N-acetylglucosamine acyltransferase
2145	 31.08	+1	2216387..2216830	-	147	157738415	fabZ	Abu_2216	-	3-hydroxymyristoyl-(acyl carrier protein) dehydratase
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.