IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1956	 18.97	-2	2026521..2027063	-	180	157738226	-	Abu_2023	-	hypothetical protein
1957	 26.37	0	2027067..2027669	-	200	157738227	-	Abu_2024	-	hypothetical protein
1958	 31.65	+1	2027771..2028127	-	118	157738228	rplS	Abu_2025	-	50S ribosomal protein L19
1959	 27.68	0	2028183..2028872	-	229	157738229	trmD	Abu_2026	-	tRNA (guanine-N(1)-)-methyltransferase
1960	 30.48	+1	2028979..2029329	+	116	157738230	-	Abu_2027	-	hypothetical protein
1961	 26.54	0	2029494..2031761	+	755	157738231	metE	Abu_2028	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1962	 30.85	+1	2031867..2033072	+	401	157738232	ilvA	Abu_2029	-	threonine deaminase
1963	 32.31	+1	2033163..2033849	+	228	157738233	atpB	Abu_2030	-	F0F1 ATP synthase subunit A
1964	 25.95	0	2033911..2034465	+	184	157738234	-	Abu_2031	-	thiamine monophosphate synthase
1965	 30.88	+1	2034541..2035842	-	433	157738235	porA	Abu_2032	-	major outer membrane protein
1966	 22.12	-1	2036134..2036445	-	103	157738236	folB	Abu_2033	-	dihydroneopterin aldolase
1967	 28.21	0	2036442..2037065	-	207	157738237	-	Abu_2034	-	putative glycerol-3-phosphate acyltransferase PlsY
1968	 29.29	0	2037154..2038143	+	329	157738238	nadA	Abu_2035	-	quinolinate synthetase
1969	 30.17	0	2038140..2038961	+	273	157738239	nadC	Abu_2036	-	nicotinate-nucleotide pyrophosphorylase
1970	 28.06	0	2039015..2040001	+	328	157738240	-	Abu_2037	-	exopolyphosphatase-related protein
1971	 27.99	0	2039985..2041370	+	461	157738241	-	Abu_2038	-	M24/M37 family peptidase
1972	 29.80	0	2041374..2042279	+	301	157738242	lpxC	Abu_2039	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1973	 22.08	-1	2042286..2042738	+	150	157738243	-	Abu_2040	-	hypothetical protein
1974	 29.48	0	2042753..2043634	+	293	157738244	thrB	Abu_2041	-	homoserine kinase
1975	 24.31	0	2043671..2043958	+	95	157738245	-	Abu_2042	-	hypothetical protein
1976	 31.31	+1	2043933..2046605	+	890	157738246	infB	Abu_2043	-	translation initiation factor IF-2
1977	 24.44	0	2046607..2046966	+	119	157738247	rbfA	Abu_2044	-	ribosome-binding factor A
1978	 29.37	0	2046963..2047391	+	142	157738248	-	Abu_2045	-	hypothetical protein
1979	 25.47	0	2047406..2048410	+	334	157738249	ribD	Abu_2046	-	bifunctional riboflavin biosynthesis protein RibD
1980	 32.26	+1	2048422..2048982	-	186	157738250	efp	Abu_2047	-	elongation factor P
1981	 28.80	0	2048996..2050582	-	528	157738251	serA	Abu_2048	-	D-3-phosphoglycerate dehydrogenase
1982	 27.04	0	2050593..2052245	-	550	157738252	rpsA	Abu_2049	-	30S ribosomal protein S1
1983	 28.33	0	2052312..2053151	-	279	157738253	ispH	Abu_2050	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1984	 30.28	0	2053230..2054507	-	425	157738254	aroA	Abu_2051	-	3-phosphoshikimate 1-carboxyvinyltransferase
1985	 24.43	0	2054521..2056845	-	774	157738255	pheT	Abu_2052	-	phenylalanyl-tRNA synthetase subunit beta
1986	 29.41	0	2056842..2057834	-	330	157738256	pheS	Abu_2053	-	phenylalanyl-tRNA synthetase subunit alpha
1987	 26.96	0	2057950..2058294	+	114	157738257	-	Abu_2054	-	HIT family protein
1988	 30.13	0	2058305..2059240	-	311	157738258	accA	Abu_2055	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1989	 32.54	+1	2059298..2060557	-	419	157738259	fabF	Abu_2056	-	3-oxoacyl-(acyl carrier protein) synthase II
1990	 33.33	+1	2060674..2060904	-	76	157738260	acpP	Abu_2057	-	acyl carrier protein, putative
1991	 30.51	+1	2061001..2061744	-	247	157738261	fabG	Abu_2058	-	3-ketoacyl-(acyl-carrier-protein) reductase
1992	 24.71	0	2061802..2062566	-	254	157738262	-	Abu_2059	-	radical SAM domain-containing protein
1993	 24.19	0	2062559..2063083	-	174	157738263	-	Abu_2060	-	hypothetical protein
1994	 29.40	0	2063080..2063766	-	228	157738264	exsB	Abu_2061	-	ExsB family transcriptional regulator
1995	 22.72	-1	2063878..2064282	+	134	157738265	-	Abu_2062	-	hypothetical protein
1996	 22.32	-1	2064282..2064953	+	223	157738266	-	Abu_2063	-	hypothetical protein
1997	 32.65	+1	2065012..2066040	-	342	157738267	petC	Abu_2064	-	ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit
1998	 31.33	+1	2066037..2067287	-	416	157738268	petB	Abu_2065	-	ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
1999	 37.52	+2	2067298..2067798	-	166	157738269	petA	Abu_2066	-	ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit
2000	 27.46	0	2067956..2069437	-	493	157738270	thrC	Abu_2067	-	threonine synthase
2001	 28.92	0	2069456..2070361	-	301	157738271	argB	Abu_2068	-	acetylglutamate kinase
2002	 21.81	-1	2070447..2073179	+	910	157738272	-	Abu_2069	-	ATP-dependent DNA helicase UvrD
2003	 28.81	0	2073216..2073878	+	220	157738273	-	Abu_2070	-	hypothetical protein
2004	 29.33	0	2073957..2075054	+	365	157738274	prfB	Abu_2071	-	peptide chain release factor 2
2005	 24.15	0	2075051..2075431	-	126	157738275	-	Abu_2072	-	hypothetical protein
2006	 21.30	-1	2075433..2077784	-	783	157738276	-	Abu_2073	-	hypothetical protein
2007	 20.97	-1	2077774..2078331	-	185	157738277	-	Abu_2074	-	hypothetical protein
2008	 24.44	0	2078335..2078964	-	209	157738278	-	Abu_2075	-	hypothetical protein
2009	 27.96	0	2078965..2079057	-	30	157738279	-	Abu_2076	-	hypothetical protein
2010	 27.57	0	2079068..2079310	-	80	157738280	-	Abu_2077	-	hypothetical protein
2011	 33.67	+1	2079312..2080202	-	296	157738281	ccoP	Abu_2078	-	cytochrome c oxidase, cbb3-type, subunit III
2012	 27.56	0	2080204..2080428	-	74	157738282	ccoQ	Abu_2079	-	cytochrome c oxidase, cbb3-type, subunit IV
2013	 33.93	+1	2080439..2081104	-	221	157738283	ccoO	Abu_2080	-	cytochrome c oxidase, cbb3-type, subunit II
2014	 31.22	+1	2081119..2082588	-	489	157738284	ccoN	Abu_2081	-	cytochrome c oxidase, cbb3-type, subunit I
2015	 25.79	0	2082750..2083226	-	158	157738285	smpB	Abu_2082	-	tmRNA-binding protein SmpB
2016	 26.01	0	2083216..2083980	-	254	157738286	ispE	Abu_2083	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2017	 23.43	-1	2083982..2084839	-	285	157738287	truB	Abu_2084	-	tRNA pseudouridine synthase B
2018	 27.30	0	2084856..2086910	-	684	157738288	-	Abu_2085	-	ATP-dependent DNA helicase UvrD
2019	 26.76	0	2087027..2087923	+	298	157738289	-	Abu_2086	-	LysR family transcriptional regulator
2020	 27.00	0	2087940..2088902	-	320	157738290	-	Abu_2087	-	hypothetical protein
2021	 30.88	+1	2088902..2090248	-	448	157738291	purF	Abu_2088	-	amidophosphoribosyltransferase
2022	 31.14	+1	2090260..2091033	-	257	157738292	dapB	Abu_2089	-	dihydrodipicolinate reductase
2023	 34.30	+2	2091047..2091976	-	309	157738293	trxB	Abu_2090	-	thioredoxin reductase
2024	 30.82	+1	2092193..2092510	-	105	157738294	trx2	Abu_2091	-	thioredoxin
2025	 30.48	0	2092690..2095245	+	851	157738295	alaS	Abu_2092	-	alanyl-tRNA synthetase
2026	 25.10	0	2095273..2095989	-	238	157738296	-	Abu_2093	-	hypothetical protein
2027	 24.16	0	2096019..2097152	-	377	157738297	-	Abu_2094	-	major facilitator superfamily transporter
2028	 20.92	-1	2097142..2097705	-	187	157738298	-	Abu_2095	-	hypothetical protein
2029	 21.43	-1	2097788..2098207	+	139	157738299	-	Abu_2096	-	hypothetical protein
2030	 22.22	-1	2098208..2099431	-	407	157738300	-	Abu_2097	-	two-component sensor histidine kinase
2031	 26.40	0	2099428..2100090	-	220	157738301	-	Abu_2098	-	two-component response regulator
2032	 28.50	0	2100118..2101545	-	475	157738302	htrA	Abu_2099	-	periplasmic serine protease DO; heat shock protein HtrA
2033	 32.92	+1	2101660..2103348	-	562	157738303	ilvD	Abu_2100	-	dihydroxy-acid dehydratase
2034	 24.90	0	2104088..2105320	+	410	157738304	int	Abu_2104	-	phage integrase
2035	 25.00	0	2105749..2106120	-	123	157738305	-	Abu_2105	-	hypothetical protein
2036	 19.39	-2	2106412..2106576	-	54	157738306	-	Abu_2106	-	hypothetical protein
2037	 24.79	0	2106622..2106738	-	38	157738307	-	Abu_2107	-	hypothetical protein
2038	 25.88	0	2106738..2107421	-	227	157738308	-	Abu_2108	-	hypothetical protein
2039	 22.84	-1	2107584..2107907	-	107	157738309	-	Abu_2109	-	hypothetical protein
2040	 19.80	-2	2107885..2108187	-	100	157738310	-	Abu_2110	-	hypothetical protein
2041	 29.58	0	2108187..2108399	-	70	157738311	-	Abu_2111	-	hypothetical protein
2042	 35.29	+2	2109171..2109425	+	84	157738312	-	Abu_2112	-	hypothetical protein
2043	 21.51	-1	2109457..2110437	-	326	157738313	-	Abu_2113	-	hypothetical protein
2044	 24.55	0	2110418..2111089	-	223	157738314	-	Abu_2114	-	ABC transporter, ATP-binding protein
2045	 20.78	-1	2111086..2112264	-	392	157738315	-	Abu_2115	-	hypothetical protein
2046	 29.57	0	2112651..2113022	+	123	157738316	dksA	Abu_2116	-	DnaK suppressor protein DksA
2047	 24.72	0	2113019..2114017	+	332	157738317	-	Abu_2117	-	tRNA pseudouridine synthase
2048	 24.39	0	2114051..2115034	-	327	157738318	-	Abu_2118	-	hypothetical protein
2049	 23.49	0	2115044..2115622	-	192	157738319	-	Abu_2119	-	hypothetical protein
2050	 28.07	0	2115740..2117050	+	436	157738320	ctpA	Abu_2120	-	carboxyl-terminal protease family protein
2051	 27.46	0	2117062..2118015	+	317	157738321	purC	Abu_2121	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2052	 26.42	0	2118072..2118317	+	81	157738322	purS	Abu_2122	-	phosphoribosylformylglycinamidine synthetase
2053	 27.38	0	2118319..2118990	+	223	157738323	purQ	Abu_2123	-	phosphoribosylformylglycinamidine synthase subunit I
2054	 23.53	0	2119019..2120089	+	356	157738324	-	Abu_2124	-	hypothetical protein
2055	 29.99	0	2120076..2120762	+	228	157738325	plsC	Abu_2125	-	1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.