IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1908	 25.77	0	1972082..1973020	+	312	157738178	-	Abu_1970	-	hypothetical protein
1909	 23.46	-1	1973017..1973553	-	178	157738179	rimM	Abu_1971	-	16S rRNA processing protein
1910	 27.08	0	1973554..1973793	-	79	157738180	-	Abu_1972	-	hypothetical protein
1911	 28.07	0	1973807..1974034	-	75	157738181	rpsP	Abu_1973	-	30S ribosomal protein S16
1912	 30.08	0	1974115..1975467	-	450	157738182	ffh	Abu_1974	-	signal recognition particle protein
1913	 26.46	0	1975618..1976373	-	251	157738183	-	Abu_1975	-	ribosomal large subunit pseudouridine synthase
1914	 24.22	0	1976364..1977515	-	383	157738184	kdtA	Abu_1976	-	3-deoxy-D-manno-octulosonic-acid transferase
1915	 27.00	0	1977518..1978243	-	241	157738185	-	Abu_1977	-	hypothetical protein
1916	 23.81	0	1978236..1978991	-	251	157738186	-	Abu_1978	-	hypothetical protein
1917	 32.54	+1	1978994..1979875	-	293	157738187	glyQ	Abu_1979	-	glycyl-tRNA synthetase subunit alpha
1918	 25.97	0	1979872..1980102	-	76	157738188	-	Abu_1980	-	glutaredoxin-like protein
1919	 33.74	+1	1980102..1980596	-	164	157738189	purE	Abu_1981	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1920	 20.00	-1	1980637..1981881	-	414	157738190	-	Abu_1982	-	hypothetical protein
1921	 29.38	0	1981904..1983193	-	429	157738191	-	Abu_1983	-	U32 family peptidase
1922	 26.18	0	1983304..1985706	-	800	157738192	-	Abu_1984	-	methyl-accepting chemotaxis protein
1923	 22.83	-1	1985761..1987293	-	510	157738193	recN	Abu_1985	-	DNA repair protein RecN
1924	 25.14	0	1987297..1988163	-	288	157738194	-	Abu_1986	-	NAD(+) kinase
1925	 34.66	+2	1988357..1990465	-	702	157738195	fus	Abu_1987	-	translational elongation factor G
1926	 32.91	+1	1990475..1990942	-	155	157738196	rpsG	Abu_1988	-	30S ribosomal protein S7
1927	 34.11	+2	1990959..1991342	-	127	157738197	rpsL	Abu_1989	-	30S ribosomal protein S12
1928	 24.54	0	1991564..1992325	+	253	157738198	-	Abu_1990	-	alpha/beta hydrolase
1929	 30.45	0	1992399..1993544	+	381	157738199	araJ	Abu_1991	-	putative transport protein AraJ
1930	 27.28	0	1993587..1995650	-	687	157738200	-	Abu_1992	-	TonB-dependent receptor protein
1931	 28.28	0	1995739..1996707	-	322	157738201	-	Abu_1993	-	putative sulfonate/nitrate transport system substrate-binding protein
1932	 23.38	-1	1996728..1997963	-	411	157738202	-	Abu_1994	-	nitrite/nitric oxide reductase-related protein NnrS
1933	 24.93	0	1997960..1998709	-	249	157738203	-	Abu_1995	-	ABC transporter, ATP-binding protein
1934	 29.50	0	1998697..1999479	-	260	157738204	-	Abu_1996	-	ABC transporter, permease protein
1935	 23.58	0	2005441..2006055	-	204	157738205	-	Abu_2002	-	hypothetical protein
1936	 22.58	-1	2006052..2007260	-	402	157738206	-	Abu_2003	-	hypothetical protein
1937	 28.07	0	2007268..2007837	-	189	157738207	trpG	Abu_2004	-	anthranilate synthase component II
1938	 30.06	0	2007996..2009003	+	335	157738208	fbpA	Abu_2005	-	putative iron-uptake ABC transporter, periplasmic iron-binding protein
1939	 25.18	0	2008994..2010562	+	522	157738209	fbpB	Abu_2006	-	putative iron-uptake ABC transporter, permease protein
1940	 25.83	0	2010559..2011491	+	310	157738210	-	Abu_2007	-	ABC transporter, ATP-binding protein
1941	 24.77	0	2011510..2012490	+	326	157738211	-	Abu_2008	-	AraC family transcriptional regulator
1942	 28.59	0	2012593..2014677	+	694	157738212	-	Abu_2009	-	ferrichrome-iron receptor
1943	 27.72	0	2014689..2014991	+	100	157738213	-	Abu_2010	-	hypothetical protein
1944	 27.30	0	2015001..2016575	+	524	157738214	-	Abu_2011	-	hypothetical protein
1945	 27.38	0	2016559..2017062	+	167	157738215	-	Abu_2012	-	hypothetical protein
1946	 29.93	0	2017087..2018673	-	528	157738216	nirA	Abu_2013	-	ferredoxin-nitrite reductase
1947	 28.85	0	2018884..2019975	+	363	157738217	-	Abu_2014	-	hypothetical protein
1948	 26.75	0	2020004..2020231	+	75	157738218	-	Abu_2015	-	hypothetical protein
1949	 25.68	0	2020215..2020619	+	134	157738219	-	Abu_2016	-	hypothetical protein
1950	 27.55	0	2020695..2022803	+	702	157738220	-	Abu_2017	-	S1 RNA-binding domain-containing protein
1951	 31.09	+1	2022813..2023169	-	118	157738221	-	Abu_2018	-	hypothetical protein
1952	 31.25	+1	2023179..2023562	-	127	157738222	-	Abu_2019	-	hypothetical protein
1953	 26.36	0	2023603..2024376	-	257	157738223	-	Abu_2020	-	MutT/nudix family protein
1954	 26.51	0	2024389..2025267	-	292	157738224	-	Abu_2021	-	AraC family transcriptional regulator
1955	 25.97	0	2025397..2026509	+	370	157738225	-	Abu_2022	-	aminotransferase, classes I and II
1956	 18.97	-2	2026521..2027063	-	180	157738226	-	Abu_2023	-	hypothetical protein
1957	 26.37	0	2027067..2027669	-	200	157738227	-	Abu_2024	-	hypothetical protein
1958	 31.65	+1	2027771..2028127	-	118	157738228	rplS	Abu_2025	-	50S ribosomal protein L19
1959	 27.68	0	2028183..2028872	-	229	157738229	trmD	Abu_2026	-	tRNA (guanine-N(1)-)-methyltransferase
1960	 30.48	+1	2028979..2029329	+	116	157738230	-	Abu_2027	-	hypothetical protein
1961	 26.54	0	2029494..2031761	+	755	157738231	metE	Abu_2028	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1962	 30.85	+1	2031867..2033072	+	401	157738232	ilvA	Abu_2029	-	threonine deaminase
1963	 32.31	+1	2033163..2033849	+	228	157738233	atpB	Abu_2030	-	F0F1 ATP synthase subunit A
1964	 25.95	0	2033911..2034465	+	184	157738234	-	Abu_2031	-	thiamine monophosphate synthase
1965	 30.88	+1	2034541..2035842	-	433	157738235	porA	Abu_2032	-	major outer membrane protein
1966	 22.12	-1	2036134..2036445	-	103	157738236	folB	Abu_2033	-	dihydroneopterin aldolase
1967	 28.21	0	2036442..2037065	-	207	157738237	-	Abu_2034	-	putative glycerol-3-phosphate acyltransferase PlsY
1968	 29.29	0	2037154..2038143	+	329	157738238	nadA	Abu_2035	-	quinolinate synthetase
1969	 30.17	0	2038140..2038961	+	273	157738239	nadC	Abu_2036	-	nicotinate-nucleotide pyrophosphorylase
1970	 28.06	0	2039015..2040001	+	328	157738240	-	Abu_2037	-	exopolyphosphatase-related protein
1971	 27.99	0	2039985..2041370	+	461	157738241	-	Abu_2038	-	M24/M37 family peptidase
1972	 29.80	0	2041374..2042279	+	301	157738242	lpxC	Abu_2039	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1973	 22.08	-1	2042286..2042738	+	150	157738243	-	Abu_2040	-	hypothetical protein
1974	 29.48	0	2042753..2043634	+	293	157738244	thrB	Abu_2041	-	homoserine kinase
1975	 24.31	0	2043671..2043958	+	95	157738245	-	Abu_2042	-	hypothetical protein
1976	 31.31	+1	2043933..2046605	+	890	157738246	infB	Abu_2043	-	translation initiation factor IF-2
1977	 24.44	0	2046607..2046966	+	119	157738247	rbfA	Abu_2044	-	ribosome-binding factor A
1978	 29.37	0	2046963..2047391	+	142	157738248	-	Abu_2045	-	hypothetical protein
1979	 25.47	0	2047406..2048410	+	334	157738249	ribD	Abu_2046	-	bifunctional riboflavin biosynthesis protein RibD
1980	 32.26	+1	2048422..2048982	-	186	157738250	efp	Abu_2047	-	elongation factor P
1981	 28.80	0	2048996..2050582	-	528	157738251	serA	Abu_2048	-	D-3-phosphoglycerate dehydrogenase
1982	 27.04	0	2050593..2052245	-	550	157738252	rpsA	Abu_2049	-	30S ribosomal protein S1
1983	 28.33	0	2052312..2053151	-	279	157738253	ispH	Abu_2050	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
1984	 30.28	0	2053230..2054507	-	425	157738254	aroA	Abu_2051	-	3-phosphoshikimate 1-carboxyvinyltransferase
1985	 24.43	0	2054521..2056845	-	774	157738255	pheT	Abu_2052	-	phenylalanyl-tRNA synthetase subunit beta
1986	 29.41	0	2056842..2057834	-	330	157738256	pheS	Abu_2053	-	phenylalanyl-tRNA synthetase subunit alpha
1987	 26.96	0	2057950..2058294	+	114	157738257	-	Abu_2054	-	HIT family protein
1988	 30.13	0	2058305..2059240	-	311	157738258	accA	Abu_2055	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1989	 32.54	+1	2059298..2060557	-	419	157738259	fabF	Abu_2056	-	3-oxoacyl-(acyl carrier protein) synthase II
1990	 33.33	+1	2060674..2060904	-	76	157738260	acpP	Abu_2057	-	acyl carrier protein, putative
1991	 30.51	+1	2061001..2061744	-	247	157738261	fabG	Abu_2058	-	3-ketoacyl-(acyl-carrier-protein) reductase
1992	 24.71	0	2061802..2062566	-	254	157738262	-	Abu_2059	-	radical SAM domain-containing protein
1993	 24.19	0	2062559..2063083	-	174	157738263	-	Abu_2060	-	hypothetical protein
1994	 29.40	0	2063080..2063766	-	228	157738264	exsB	Abu_2061	-	ExsB family transcriptional regulator
1995	 22.72	-1	2063878..2064282	+	134	157738265	-	Abu_2062	-	hypothetical protein
1996	 22.32	-1	2064282..2064953	+	223	157738266	-	Abu_2063	-	hypothetical protein
1997	 32.65	+1	2065012..2066040	-	342	157738267	petC	Abu_2064	-	ubiquinol cytochrome c oxidoreductase, cytochrome c1 subunit
1998	 31.33	+1	2066037..2067287	-	416	157738268	petB	Abu_2065	-	ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
1999	 37.52	+2	2067298..2067798	-	166	157738269	petA	Abu_2066	-	ubiquinol cytochrome c oxidoreductase, 2Fe-2S subunit
2000	 27.46	0	2067956..2069437	-	493	157738270	thrC	Abu_2067	-	threonine synthase
2001	 28.92	0	2069456..2070361	-	301	157738271	argB	Abu_2068	-	acetylglutamate kinase
2002	 21.81	-1	2070447..2073179	+	910	157738272	-	Abu_2069	-	ATP-dependent DNA helicase UvrD
2003	 28.81	0	2073216..2073878	+	220	157738273	-	Abu_2070	-	hypothetical protein
2004	 29.33	0	2073957..2075054	+	365	157738274	prfB	Abu_2071	-	peptide chain release factor 2
2005	 24.15	0	2075051..2075431	-	126	157738275	-	Abu_2072	-	hypothetical protein
2006	 21.30	-1	2075433..2077784	-	783	157738276	-	Abu_2073	-	hypothetical protein
2007	 20.97	-1	2077774..2078331	-	185	157738277	-	Abu_2074	-	hypothetical protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.