IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 30.36	0	150228..150968	+	246	157736415	dapF	Abu_0144	-	diaminopimelate epimerase
145	 31.45	+1	150993..152162	+	389	157736416	purT	Abu_0145	-	phosphoribosylglycinamide formyltransferase 2
146	 25.05	0	152171..152641	+	156	157736417	-	Abu_0146	-	MarR family transcriptional regulator
147	 27.51	0	152643..152951	-	102	157736418	-	Abu_0147	-	hypothetical protein
148	 25.23	0	153035..154255	-	406	157736419	-	Abu_0148	-	hypothetical protein
149	 27.33	0	154544..155392	-	282	157736420	ubiA	Abu_0150	-	prenyltransferase
150	 18.14	-2	155484..155687	+	67	157736421	-	Abu_0151	-	hypothetical protein
151	 24.66	0	155684..156559	+	291	157736422	miaA	Abu_0152	-	tRNA delta(2)-isopentenylpyrophosphate transferase
152	 32.84	+1	156640..156843	+	67	157736423	rpmE	Abu_0153	-	50S ribosomal protein L31
153	 28.59	0	156856..157677	+	273	157736424	-	Abu_0154	-	putative methyltransferase
154	 29.28	0	157674..158363	+	229	157736425	-	Abu_0155	-	TrmH family tRNA methyltransferase
155	 23.58	0	158376..159185	+	269	157736426	-	Abu_0156	-	hypothetical protein
156	 31.77	+1	159189..160403	+	404	157736427	aspB1	Abu_0157	-	aspartate aminotransferase
157	 30.09	0	160528..161790	+	420	157736428	hom	Abu_0158	-	homoserine dehydrogenase
158	 32.18	+1	161886..162662	+	258	157736429	traT	Abu_0159	-	TraT complement resistance protein precursor
159	 27.80	0	162796..163554	+	252	157736430	cdsA	Abu_0160	-	CDP-diglyceride synthetase CdsA
160	 28.00	0	163551..164618	+	355	157736431	dxr	Abu_0161	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
161	 20.07	-1	164608..164901	+	97	157736432	-	Abu_0162	-	hypothetical protein
162	 29.81	0	164894..165460	+	188	157736433	-	Abu_0163	-	hypothetical protein
163	 30.34	0	165463..166464	+	333	157736434	gcp	Abu_0164	-	O-sialoglycoprotein endopeptidase
164	 27.87	0	166465..166812	+	115	157736435	-	Abu_0165	-	hypothetical protein
165	 27.56	0	166844..168229	+	461	157736436	-	Abu_0166	-	putative carbohydrate kinase
166	 21.15	-1	168226..168537	+	103	157736437	-	Abu_0167	-	periplasmic protein
167	 30.77	+1	168534..169313	+	259	157736438	thiG	Abu_0168	-	thiazole synthase
168	 33.61	+1	170234..172066	-	610	157736439	pycB1	Abu_0176	-	pyruvate/oxaloacetate carboxyltransferase
169	 31.09	+1	172073..172339	-	88	157736440	-	Abu_0177	-	hypothetical protein
170	 25.11	0	172487..173362	+	291	157736441	-	Abu_0178	-	AraC family transcriptional regulator
171	 31.91	+1	173409..174389	+	326	157736442	-	Abu_0179	-	calcium:sodium antiporter
172	 26.95	0	174410..176431	-	673	157736443	-	Abu_0180	-	methyl-accepting chemotaxis protein
173	 22.92	-1	176536..179310	+	924	157736444	-	Abu_0181	-	DNA/RNA helicase
174	 32.08	+1	179388..181307	+	639	157736445	tkt	Abu_0182	-	transketolase
175	 27.97	0	181425..181778	+	117	157736446	lrgA	Abu_0183	-	LrgA family protein
176	 27.52	0	181768..182490	+	240	157736447	lrgB	Abu_0184	-	LrgB-like protein
177	 29.10	0	182505..182858	+	117	157736448	-	Abu_0185	-	hypothetical protein
178	 26.42	0	182873..183277	-	134	157736449	-	Abu_0186	-	hypothetical protein
179	 29.94	0	183341..184786	-	481	157736450	dctA	Abu_0187	-	C4-dicarboxylate transport protein
180	 20.03	-1	184871..185509	+	212	157736451	-	Abu_0188	-	hypothetical protein
181	 22.13	-1	185509..185883	+	124	157736452	-	Abu_0189	-	hypothetical protein
182	 27.19	0	185873..186523	+	216	157736453	-	Abu_0190	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-related protein
183	 27.55	0	186523..187455	+	310	157736454	-	Abu_0191	-	CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
184	 27.43	0	187457..188083	+	208	157736455	-	Abu_0192	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
185	 25.27	0	188095..191577	+	1160	157736456	aas	Abu_0193	-	2-acyl-glycerophospho-ethanolamine acyltransferase
186	 24.49	0	191582..194113	-	843	157736457	glnD	Abu_0194	-	protein-P-II uridylyltransferase
187	 24.04	0	194110..194862	-	250	157736458	-	Abu_0195	-	hypothetical protein
188	 22.41	-1	194924..195793	-	289	157736459	-	Abu_0196	-	hypothetical protein
189	 22.84	-1	195863..197797	-	644	157736460	-	Abu_0197	-	ankyrin repeat-containing protein
190	 33.04	+1	197999..198337	+	112	157736461	glnB1	Abu_0198	-	nitrogen regulatory protein PII
191	 29.43	0	198338..199363	+	341	157736462	pyrC	Abu_0199	-	dihydroorotase
192	 26.74	0	199381..200487	-	368	157736463	fliM	Abu_0200	-	flagellar motor switch protein FliM
193	 28.57	0	200491..201540	-	349	157736464	flgI	Abu_0201	-	flagellar P-ring protein FlgI
194	 24.90	0	201645..202937	+	430	157736465	-	Abu_0202	-	hypothetical protein
195	 27.97	0	202940..203200	+	86	157736466	fliQ	Abu_0203	-	flagellar basal body protein FliQ
196	 25.43	0	203202..203606	+	134	157736467	-	Abu_0204	-	hypothetical protein
197	 23.78	0	203615..204106	+	163	157736468	-	Abu_0205	-	hypothetical protein
198	 28.41	0	204108..204635	+	175	157736469	fliL	Abu_0206	-	flagellar basal body-associated protein
199	 25.41	0	204635..205063	+	142	157736470	-	Abu_0207	-	hypothetical protein
200	 28.09	0	205060..205764	+	234	157736471	flgH	Abu_0208	-	flagellar basal body L-ring protein FlgH
201	 28.52	0	205818..207728	+	636	157736472	flgK	Abu_0209	-	flagellar hook-associated protein FlgK
202	 29.82	0	207749..209086	+	445	157736473	fliD	Abu_0210	-	flagellar hook-associated protein 2
203	 28.01	0	209158..209514	+	118	157736474	fliS	Abu_0211	-	flagellar protein FliS
204	 26.67	0	209490..209759	+	89	157736475	-	Abu_0212	-	hypothetical protein
205	 21.41	-1	209748..210728	-	326	157736476	tilS	Abu_0213	-	tRNA(Ile)-lysidine synthase
206	 30.50	+1	210731..212071	-	446	157736477	yliG	Abu_0214	-	MiaB-like tRNA modifying enzyme
207	 27.96	0	212139..212957	-	272	157736478	panC	Abu_0215	-	pantoate--beta-alanine ligase
208	 25.42	0	212977..213936	-	319	157736479	-	Abu_0216	-	oligopeptide ABC transporter, permease protein
209	 27.17	0	213966..214322	+	118	157736480	acpS	Abu_0217	-	holo-(acyl-carrier-protein) synthase
210	 31.95	+1	214357..215583	-	408	157736481	gltS	Abu_0218	-	sodium:glutamate symporter
211	 29.40	0	215607..215987	-	126	157736482	-	Abu_0219	-	Holliday junction resolvase-like protein
212	 29.93	0	215984..216895	-	303	157736483	metF	Abu_0220	-	5,10-methylenetetrahydrofolate reductase
213	 30.14	0	216976..217602	+	208	157736484	serB	Abu_0221	-	3-phosphoserine phosphatase
214	 28.00	0	217605..218597	+	330	157736485	tal	Abu_0222	-	transaldolase
215	 31.71	+1	218665..220017	+	450	157736486	dhs	Abu_0223	-	3-deoxy-D-arabinoheptulosonate 7-phosphate synthase (DAHP synthetase class II)
216	 27.76	0	220083..220925	+	280	157736487	tsx	Abu_0224	-	nucleoside-specific channel-forming protein
217	 27.41	0	224501..225496	+	331	157736488	-	Abu_0227	-	DNA binding protein
218	 25.15	0	225491..225832	-	113	157736489	-	Abu_0228	-	hypothetical protein
219	 27.15	0	225983..226273	-	96	157736490	gatC	Abu_0229	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
220	 31.19	+1	226317..227438	-	373	157736491	tgt	Abu_0230	-	queuine tRNA-ribosyltransferase
221	 24.74	0	227540..228982	+	480	157736492	-	Abu_0231	-	hypothetical protein
222	 27.67	0	228992..230122	+	376	157736493	aspB2	Abu_0232	-	hypothetical protein
223	 23.42	-1	230115..230699	+	194	157736494	-	Abu_0233	-	hypothetical protein
224	 28.59	0	230699..232006	+	435	157736495	murC	Abu_0234	-	UDP-N-acetylmuramate--L-alanine ligase
225	 25.87	0	232015..232791	-	258	157736496	dprA	Abu_0235	-	SMF protein, DNA processing chain A
226	 25.37	0	232834..233913	-	359	157736497	-	Abu_0236	-	hypothetical protein
227	 33.82	+1	233955..234977	-	340	157736498	ilvC	Abu_0237	-	ketol-acid reductoisomerase
228	 24.65	0	235102..236955	+	617	157736499	rnr	Abu_0238	-	ribonuclease R
229	 24.07	0	236945..237322	-	125	157736500	-	Abu_0239	-	hypothetical protein
230	 25.18	0	237387..238367	+	326	157736501	-	Abu_0240	-	DNA polymerase III subunit delta
231	 29.41	0	238455..238811	+	118	157736502	rpsF	Abu_0241	-	30S ribosomal protein S6
232	 31.97	+1	238832..239344	+	170	157736503	ssb	Abu_0242	-	single-strand DNA binding protein
233	 28.46	0	239359..239625	+	88	157736504	rpsR	Abu_0243	-	30S ribosomal protein S18
234	 22.39	-1	239698..239898	+	66	157736505	-	Abu_0244	-	hypothetical protein
235	 26.99	0	239893..241296	-	467	157736506	cysS	Abu_0245	-	cysteinyl-tRNA synthetase
236	 28.06	0	241301..242476	-	391	157736507	nusA	Abu_0246	-	transcription elongation factor NusA
237	 26.75	0	242630..242872	+	80	157736508	-	Abu_0247	-	hypothetical protein
238	 29.60	0	242894..244204	+	436	157736509	miaB	Abu_0248	-	tRNA-methylthiotransferase
239	 27.80	0	244207..244821	+	204	157736510	-	Abu_0249	-	putative lipoprotein
240	 21.48	-1	244832..246400	+	522	157736511	-	Abu_0250	-	hypothetical protein
241	 28.15	0	246413..247474	-	353	157736512	-	Abu_0251	-	hypothetical protein
242	 22.64	-1	247480..247797	-	105	157736513	-	Abu_0252	-	hypothetical protein
243	 28.48	0	247802..248440	-	212	157736514	cynT2	Abu_0253	-	carbonic anhydrase
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.