IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1770	 21.23	-1	1815544..1816881	-	445	157738040	-	Abu_1814	-	putative O-antigen polymerase
1771	 25.14	0	1816893..1817966	-	357	157738041	-	Abu_1815	-	aminotransferase
1772	 28.38	0	1817968..1818996	-	342	157738042	-	Abu_1816	-	dTDP-glucose 4,6-dehydratase
1773	 29.93	0	1818986..1819867	-	293	157738043	-	Abu_1817	-	glucose-1-phosphate thymidylyltransferase
1774	 22.50	-1	1819867..1821870	-	667	157738044	-	Abu_1818	-	phosphoglycerol transferase
1775	 24.86	0	1821884..1822237	-	117	157738045	dgkA	Abu_1819	-	diacylglycerol kinase
1776	 20.54	-1	1822239..1823012	-	257	157738046	-	Abu_1820	-	hypothetical protein
1777	 24.37	0	1823009..1823923	-	304	157738047	waaM	Abu_1821	-	lipid A biosynthesis lauroyl acyltransferase
1778	 24.38	0	1823916..1824920	-	334	157738048	waaC	Abu_1822	-	lipopolysaccharide heptosyltransferase I
1779	 24.63	0	1824917..1826386	-	489	157738049	gppA	Abu_1823	-	guanosine pentaphosphate phosphohydrolase (gppA)
1780	 32.94	+1	1826386..1826640	-	84	157738050	fdxB	Abu_1824	-	ferredoxin
1781	 23.60	0	1826684..1827433	-	249	157738051	-	Abu_1825	-	inositol monophosphatase family protein
1782	 31.88	+1	1827436..1828812	-	458	157738052	gltD	Abu_1826	-	glutamate synthase subunit beta
1783	 29.98	0	1828818..1833257	-	1479	157738053	gltB	Abu_1827	-	glutamate synthase, large chain
1784	 23.65	0	1833452..1834246	-	264	157738054	-	Abu_1828	-	hypothetical protein
1785	 22.39	-1	1834250..1835035	-	261	157738055	-	Abu_1829	-	hypothetical protein
1786	 26.75	0	1835231..1837615	-	794	157738056	-	Abu_1830	-	methyl-accepting chemotaxis protein
1787	 27.04	0	1838229..1840184	-	651	157738057	-	Abu_1831	-	methyl-accepting chemotaxis protein
1788	 21.64	-1	1840197..1840367	-	56	157738058	-	Abu_1832	-	hypothetical protein
1789	 24.15	0	1840718..1842154	-	478	157738059	gspD	Abu_1833	-	general secretion pathway protein D
1790	 26.18	0	1842184..1842756	-	190	157738060	-	Abu_1834	-	hypothetical protein
1791	 23.46	-1	1842783..1843481	+	232	157738061	tlyA	Abu_1835	-	hemolysin A
1792	 25.53	0	1843450..1844295	+	281	157738062	ribF	Abu_1836	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1793	 25.00	0	1844327..1845034	+	235	157738063	-	Abu_1837	-	methyltransferase, putative
1794	 28.80	0	1845047..1845553	+	168	157738064	bcp	Abu_1838	-	bacterioferritin comigratory protein, alkyl hydroperoxide reductase/thiol specific antioxidant
1795	 25.27	0	1845565..1846569	+	334	157738065	-	Abu_1839	-	hypothetical protein
1796	 31.89	+1	1846569..1847957	+	462	157738066	glcD	Abu_1840	-	glycolate oxidase
1797	 20.36	-1	1847965..1848750	+	261	157738067	rbn	Abu_1841	-	tRNA-processing ribonuclease BN
1798	 22.40	-1	1848747..1849313	-	188	157738068	-	Abu_1842	-	hypothetical protein
1799	 30.65	+1	1849316..1850584	-	422	157738069	murA	Abu_1843	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1800	 26.78	0	1850702..1851586	+	294	157738070	-	Abu_1844	-	hypothetical protein
1801	 32.59	+1	1851599..1852402	+	267	157738071	kdsA	Abu_1845	-	2-dehydro-3-deoxyphosphooctonate aldolase
1802	 32.70	+1	1852436..1852906	+	156	157738072	ribH	Abu_1846	-	riboflavin synthase subunit beta
1803	 25.00	0	1852909..1853304	+	131	157738073	nusB	Abu_1847	-	transcription antitermination protein NusB
1804	 27.18	0	1853306..1854004	+	232	157738074	pyrF	Abu_1848	-	orotidine 5'-phosphate decarboxylase
1805	 24.08	0	1854561..1855403	+	280	157738075	-	Abu_1851	-	ABC transporter, ATP-binding protein
1806	 21.62	-1	1855403..1857016	+	537	157738076	-	Abu_1852	-	hypothetical protein
1807	 26.22	0	1857030..1857254	+	74	157738077	feoA	Abu_1853	-	ferrous iron transport protein A
1808	 27.80	0	1857251..1859707	+	818	157738078	feoB2	Abu_1854	-	ferrous iron transport protein B
1809	 29.37	0	1859751..1860053	+	100	157738079	-	Abu_1855	-	hypothetical protein
1810	 27.85	0	1860074..1860565	-	163	157738080	-	Abu_1856	-	hypothetical protein
1811	 28.09	0	1860576..1862159	-	527	157738081	-	Abu_1857	-	hypothetical protein
1812	 30.07	0	1862168..1862473	-	101	157738082	-	Abu_1858	-	hypothetical protein
1813	 25.28	0	1862602..1864725	-	707	157738083	-	Abu_1859	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
1814	 27.78	0	1864730..1865071	-	113	157738084	-	Abu_1860	-	ArsR family transcriptional regulator
1815	 29.34	0	1865186..1867312	-	708	157738085	-	Abu_1861	-	TonB-dependent receptor protein
1816	 18.92	-2	1867525..1868079	+	184	157738086	-	Abu_1862	-	hypothetical protein
1817	 25.02	0	1868079..1871159	+	1026	157738087	-	Abu_1863	-	AcrB/AcrD/AcrF family protein
1818	 21.46	-1	1871162..1871860	+	232	157738088	-	Abu_1864	-	hypothetical protein
1819	 20.90	-1	1871860..1873017	+	385	157738089	-	Abu_1865	-	hypothetical protein
1820	 30.14	0	1873224..1873442	+	72	157738090	cspA	Abu_1866	-	cold-shock protein, DNA-binding
1821	 26.95	0	1873476..1873616	+	46	157738091	-	Abu_1867	-	hypothetical protein
1822	 23.13	-1	1873640..1874335	-	231	157738092	-	Abu_1868	-	two-component response regulator
1823	 22.24	-1	1874396..1876099	+	567	157738093	-	Abu_1869	-	two-component sensor histidine kinase
1824	 23.24	-1	1876559..1878094	+	511	157738094	-	Abu_1872	-	hypothetical protein
1825	 20.63	-1	1878625..1879419	+	264	157738095	-	Abu_1873	-	replication protein
1826	 21.11	-1	1879442..1880161	-	239	157738096	-	Abu_1874	-	hypothetical protein
1827	 23.54	0	1880425..1881894	+	489	157738097	-	Abu_1875	-	hypothetical protein
1828	 32.50	+1	1882550..1883146	+	198	157738098	ahpC	Abu_1879	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant
1829	 29.56	0	1883158..1883475	+	105	157738099	trx1	Abu_1880	-	thioredoxin
1830	 31.60	+1	1883528..1883815	-	95	157738100	-	Abu_1881	-	hypothetical protein
1831	 19.01	-2	1883858..1884241	-	127	157738101	-	Abu_1882	-	hypothetical protein
1832	 30.58	+1	1884277..1888812	-	1511	157738102	rpoC	Abu_1883	-	DNA-directed RNA polymerase, beta' chain
1833	 30.20	0	1888802..1892950	-	1382	157738103	rpoB	Abu_1884	-	DNA-directed RNA polymerase subunit beta
1834	 34.14	+2	1893107..1893478	-	123	157738104	rplL	Abu_1885	-	50S ribosomal protein L7/L12
1835	 30.67	+1	1893530..1894018	-	162	157738105	rplJ	Abu_1886	-	50S ribosomal protein L10
1836	 33.62	+1	1894179..1894877	-	232	157738106	rplA	Abu_1887	-	50S ribosomal protein L1
1837	 30.52	+1	1894953..1895378	-	141	157738107	rplK	Abu_1888	-	50S ribosomal protein L11
1838	 29.73	0	1895473..1896000	-	175	157738108	nusG	Abu_1889	-	transcription antitermination protein NusG
1839	 20.77	-1	1896010..1896192	-	60	157738109	secE	Abu_1890	-	preprotein translocase subunit SecE
1840	 26.32	0	1896387..1896557	-	56	157738110	rpmG	Abu_1892	-	50S ribosomal protein L33
1841	 37.30	+2	1896570..1897778	-	402	157738111	tufA	Abu_1893	-	elongation factor Tu
1842	 24.09	0	1898417..1899595	-	392	157738112	murD	Abu_1898	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1843	 29.85	0	1899605..1900666	-	353	157738113	mraY	Abu_1899	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
1844	 28.05	0	1900736..1902211	+	491	157738114	pgm	Abu_1900	-	phosphoglyceromutase
1845	 23.04	-1	1902211..1902900	+	229	157738115	-	Abu_1901	-	ABC transporter, ATP-binding protein
1846	 29.90	0	1902904..1904883	+	659	157738116	pbpA	Abu_1902	-	penicillin-binding protein 1A
1847	 31.72	+1	1905094..1906521	-	475	157738117	glnA	Abu_1903	-	glutamine synthetase
1848	 27.02	0	1906619..1907410	-	263	157738118	hisJ	Abu_1904	-	histidinol-phosphate phosphatase
1849	 28.31	0	1907407..1907844	-	145	157738119	moaE	Abu_1905	-	molybdopterin converting factor, subunit 2
1850	 27.48	0	1907847..1908068	-	73	157738120	moaD	Abu_1906	-	molybdopterin converting factor, subunit 1
1851	 23.94	0	1908138..1908797	+	219	157738121	-	Abu_1907	-	hypothetical protein
1852	 26.59	0	1908794..1909564	+	256	157738122	uppP	Abu_1908	-	undecaprenyl diphosphatase, putative
1853	 25.02	0	1909553..1910575	-	340	157738123	murG	Abu_1909	-	N-acetylglucosaminyl transferase
1854	 28.76	0	1910572..1911861	-	429	157738124	pbpB	Abu_1910	-	penicillin-binding protein
1855	 27.54	0	1911890..1913752	+	620	157738125	ftsW	Abu_1911	-	cell division protein FtsW
1856	 31.56	+1	1913773..1914279	+	168	157738126	ppi	Abu_1912	-	peptidyl-prolyl cis-trans isomerase
1857	 28.40	0	1920621..1921127	-	168	157738127	-	Abu_1919	-	cytochrome c
1858	 27.64	0	1921196..1923409	-	737	157738128	clpA	Abu_1920	-	ATP-dependent Clp protease, ATP-binding subunit
1859	 25.33	0	1923411..1923710	-	99	157738129	clpS	Abu_1921	-	ATP-dependent Clp protease adaptor protein ClpS
1860	 23.79	0	1923788..1924426	+	212	157738130	bioD	Abu_1922	-	dethiobiotin synthetase
1861	 20.00	-1	1924443..1924607	-	54	157738131	-	Abu_1923	-	hypothetical protein
1862	 30.51	+1	1924710..1925843	+	377	157738132	-	Abu_1924	-	hypothetical protein
1863	 29.68	0	1925860..1928379	+	839	157738133	-	Abu_1925	-	AMP-dependent synthetase and ligase
1864	 30.50	+1	1928389..1929447	+	352	157738134	-	Abu_1926	-	MaoC family protein
1865	 34.45	+2	1929480..1930463	+	327	157738135	-	Abu_1927	-	putative citrate lyase
1866	 32.86	+1	1930640..1932133	+	497	157738136	fumA	Abu_1928	-	fumarate hydratase, class I
1867	 29.27	0	1932293..1933129	+	278	157738137	-	Abu_1929	-	hypothetical protein
1868	 22.83	-1	1933140..1936052	-	970	157738138	-	Abu_1930	-	methyl-accepting chemotaxis protein
1869	 27.58	0	1936233..1937483	-	416	157738139	arsB	Abu_1931	-	arsenical pump membrane protein
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.