IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1733	 24.80	0	1772580..1772954	-	124	157738003	-	Abu_1771	-	hypothetical protein
1734	 26.02	0	1773029..1773766	-	245	157738004	ate	Abu_1772	-	arginyl-tRNA-protein transferase
1735	 27.26	0	1773769..1774509	-	246	157738005	trpA	Abu_1773	-	tryptophan synthase, alpha chain
1736	 28.18	0	1774563..1775960	-	465	157738006	-	Abu_1774	-	voltage-gated chloride channel family protein
1737	 30.12	0	1776133..1776942	+	269	157738007	panB	Abu_1775	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1738	 29.96	0	1776946..1777983	+	345	157738008	ruvB	Abu_1776	-	Holliday junction DNA helicase B
1739	 25.21	0	1777980..1779026	+	348	157738009	amaA	Abu_1777	-	acid membrane antigen A
1740	 27.89	0	1779023..1779757	-	244	157738010	-	Abu_1778	-	hypothetical protein
1741	 23.09	-1	1785709..1786635	-	308	157738011	-	Abu_1785	-	radical SAM domain-containing protein
1742	 31.80	+1	1786713..1787753	-	346	157738012	hemE	Abu_1786	-	uroporphyrinogen decarboxylase
1743	 28.65	0	1787766..1788278	-	170	157738013	-	Abu_1787	-	putative integral membrane protein
1744	 30.44	0	1788278..1789315	-	345	157738014	asd	Abu_1788	-	aspartate-semialdehyde dehydrogenase
1745	 29.04	0	1789318..1791900	-	860	157738015	gyrA	Abu_1789	-	DNA gyrase subunit A
1746	 24.07	0	1792039..1792254	-	71	157738016	-	Abu_1790	-	hypothetical protein
1747	 29.27	0	1792338..1793519	-	393	157738017	argJ	Abu_1791	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1748	 28.55	0	1793521..1794648	-	375	157738018	-	Abu_1792	-	potassium channel protein, putative
1749	 32.80	+1	1794672..1794860	-	62	157738019	rpmB	Abu_1793	-	50S ribosomal protein L28
1750	 19.38	-2	1794926..1795792	-	288	157738020	-	Abu_1794	-	hypothetical protein
1751	 24.66	0	1796039..1796407	+	122	157738021	-	Abu_1795	-	putative heptose phosphatase
1752	 25.89	0	1796416..1797423	+	335	157738022	waaD	Abu_1796	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1753	 27.14	0	1797424..1798860	+	478	157738023	waaE	Abu_1797	-	ADP-heptose synthase
1754	 32.28	+1	1798841..1799410	+	189	157738024	gmhA	Abu_1798	-	D-sedoheptulose 7-phosphate isomerase
1755	 24.33	0	1799500..1801398	+	632	157738025	-	Abu_1799	-	putative sulfatase
1756	 28.01	0	1801417..1802355	-	312	157738026	waaF	Abu_1800	-	lipopolysaccharide heptosyltransferase II
1757	 24.29	0	1802348..1803409	-	353	157738027	-	Abu_1801	-	hypothetical protein
1758	 25.19	0	1803402..1804322	-	306	157738028	-	Abu_1802	-	putative heptosyltransferase
1759	 19.20	-2	1804322..1805071	-	249	157738029	-	Abu_1803	-	hypothetical protein
1760	 24.04	0	1805206..1806852	+	548	157738030	-	Abu_1804	-	hypothetical protein
1761	 21.51	-1	1806870..1807427	-	185	157738031	-	Abu_1805	-	hypothetical protein
1762	 20.92	-1	1807436..1808329	-	297	157738032	-	Abu_1806	-	hypothetical protein
1763	 26.68	0	1808338..1809795	-	485	157738033	-	Abu_1807	-	putative acetyltransferase
1764	 22.25	-1	1809801..1810928	-	375	157738034	-	Abu_1808	-	putative glycosyltransferase
1765	 29.33	0	1810891..1811640	-	249	157738035	-	Abu_1809	-	putative glycosyltransferase
1766	 23.44	-1	1811720..1812790	+	356	157738036	-	Abu_1810	-	hypothetical protein
1767	 21.60	-1	1812813..1813826	+	337	157738037	-	Abu_1811	-	glycosyltransferase
1768	 23.69	0	1813836..1814426	-	196	157738038	-	Abu_1812	-	hypothetical protein
1769	 23.73	0	1814423..1815547	-	374	157738039	-	Abu_1813	-	glycosyltransferase
1770	 21.23	-1	1815544..1816881	-	445	157738040	-	Abu_1814	-	putative O-antigen polymerase
1771	 25.14	0	1816893..1817966	-	357	157738041	-	Abu_1815	-	aminotransferase
1772	 28.38	0	1817968..1818996	-	342	157738042	-	Abu_1816	-	dTDP-glucose 4,6-dehydratase
1773	 29.93	0	1818986..1819867	-	293	157738043	-	Abu_1817	-	glucose-1-phosphate thymidylyltransferase
1774	 22.50	-1	1819867..1821870	-	667	157738044	-	Abu_1818	-	phosphoglycerol transferase
1775	 24.86	0	1821884..1822237	-	117	157738045	dgkA	Abu_1819	-	diacylglycerol kinase
1776	 20.54	-1	1822239..1823012	-	257	157738046	-	Abu_1820	-	hypothetical protein
1777	 24.37	0	1823009..1823923	-	304	157738047	waaM	Abu_1821	-	lipid A biosynthesis lauroyl acyltransferase
1778	 24.38	0	1823916..1824920	-	334	157738048	waaC	Abu_1822	-	lipopolysaccharide heptosyltransferase I
1779	 24.63	0	1824917..1826386	-	489	157738049	gppA	Abu_1823	-	guanosine pentaphosphate phosphohydrolase (gppA)
1780	 32.94	+1	1826386..1826640	-	84	157738050	fdxB	Abu_1824	-	ferredoxin
1781	 23.60	0	1826684..1827433	-	249	157738051	-	Abu_1825	-	inositol monophosphatase family protein
1782	 31.88	+1	1827436..1828812	-	458	157738052	gltD	Abu_1826	-	glutamate synthase subunit beta
1783	 29.98	0	1828818..1833257	-	1479	157738053	gltB	Abu_1827	-	glutamate synthase, large chain
1784	 23.65	0	1833452..1834246	-	264	157738054	-	Abu_1828	-	hypothetical protein
1785	 22.39	-1	1834250..1835035	-	261	157738055	-	Abu_1829	-	hypothetical protein
1786	 26.75	0	1835231..1837615	-	794	157738056	-	Abu_1830	-	methyl-accepting chemotaxis protein
1787	 27.04	0	1838229..1840184	-	651	157738057	-	Abu_1831	-	methyl-accepting chemotaxis protein
1788	 21.64	-1	1840197..1840367	-	56	157738058	-	Abu_1832	-	hypothetical protein
1789	 24.15	0	1840718..1842154	-	478	157738059	gspD	Abu_1833	-	general secretion pathway protein D
1790	 26.18	0	1842184..1842756	-	190	157738060	-	Abu_1834	-	hypothetical protein
1791	 23.46	-1	1842783..1843481	+	232	157738061	tlyA	Abu_1835	-	hemolysin A
1792	 25.53	0	1843450..1844295	+	281	157738062	ribF	Abu_1836	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1793	 25.00	0	1844327..1845034	+	235	157738063	-	Abu_1837	-	methyltransferase, putative
1794	 28.80	0	1845047..1845553	+	168	157738064	bcp	Abu_1838	-	bacterioferritin comigratory protein, alkyl hydroperoxide reductase/thiol specific antioxidant
1795	 25.27	0	1845565..1846569	+	334	157738065	-	Abu_1839	-	hypothetical protein
1796	 31.89	+1	1846569..1847957	+	462	157738066	glcD	Abu_1840	-	glycolate oxidase
1797	 20.36	-1	1847965..1848750	+	261	157738067	rbn	Abu_1841	-	tRNA-processing ribonuclease BN
1798	 22.40	-1	1848747..1849313	-	188	157738068	-	Abu_1842	-	hypothetical protein
1799	 30.65	+1	1849316..1850584	-	422	157738069	murA	Abu_1843	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1800	 26.78	0	1850702..1851586	+	294	157738070	-	Abu_1844	-	hypothetical protein
1801	 32.59	+1	1851599..1852402	+	267	157738071	kdsA	Abu_1845	-	2-dehydro-3-deoxyphosphooctonate aldolase
1802	 32.70	+1	1852436..1852906	+	156	157738072	ribH	Abu_1846	-	riboflavin synthase subunit beta
1803	 25.00	0	1852909..1853304	+	131	157738073	nusB	Abu_1847	-	transcription antitermination protein NusB
1804	 27.18	0	1853306..1854004	+	232	157738074	pyrF	Abu_1848	-	orotidine 5'-phosphate decarboxylase
1805	 24.08	0	1854561..1855403	+	280	157738075	-	Abu_1851	-	ABC transporter, ATP-binding protein
1806	 21.62	-1	1855403..1857016	+	537	157738076	-	Abu_1852	-	hypothetical protein
1807	 26.22	0	1857030..1857254	+	74	157738077	feoA	Abu_1853	-	ferrous iron transport protein A
1808	 27.80	0	1857251..1859707	+	818	157738078	feoB2	Abu_1854	-	ferrous iron transport protein B
1809	 29.37	0	1859751..1860053	+	100	157738079	-	Abu_1855	-	hypothetical protein
1810	 27.85	0	1860074..1860565	-	163	157738080	-	Abu_1856	-	hypothetical protein
1811	 28.09	0	1860576..1862159	-	527	157738081	-	Abu_1857	-	hypothetical protein
1812	 30.07	0	1862168..1862473	-	101	157738082	-	Abu_1858	-	hypothetical protein
1813	 25.28	0	1862602..1864725	-	707	157738083	-	Abu_1859	-	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase
1814	 27.78	0	1864730..1865071	-	113	157738084	-	Abu_1860	-	ArsR family transcriptional regulator
1815	 29.34	0	1865186..1867312	-	708	157738085	-	Abu_1861	-	TonB-dependent receptor protein
1816	 18.92	-2	1867525..1868079	+	184	157738086	-	Abu_1862	-	hypothetical protein
1817	 25.02	0	1868079..1871159	+	1026	157738087	-	Abu_1863	-	AcrB/AcrD/AcrF family protein
1818	 21.46	-1	1871162..1871860	+	232	157738088	-	Abu_1864	-	hypothetical protein
1819	 20.90	-1	1871860..1873017	+	385	157738089	-	Abu_1865	-	hypothetical protein
1820	 30.14	0	1873224..1873442	+	72	157738090	cspA	Abu_1866	-	cold-shock protein, DNA-binding
1821	 26.95	0	1873476..1873616	+	46	157738091	-	Abu_1867	-	hypothetical protein
1822	 23.13	-1	1873640..1874335	-	231	157738092	-	Abu_1868	-	two-component response regulator
1823	 22.24	-1	1874396..1876099	+	567	157738093	-	Abu_1869	-	two-component sensor histidine kinase
1824	 23.24	-1	1876559..1878094	+	511	157738094	-	Abu_1872	-	hypothetical protein
1825	 20.63	-1	1878625..1879419	+	264	157738095	-	Abu_1873	-	replication protein
1826	 21.11	-1	1879442..1880161	-	239	157738096	-	Abu_1874	-	hypothetical protein
1827	 23.54	0	1880425..1881894	+	489	157738097	-	Abu_1875	-	hypothetical protein
1828	 32.50	+1	1882550..1883146	+	198	157738098	ahpC	Abu_1879	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant
1829	 29.56	0	1883158..1883475	+	105	157738099	trx1	Abu_1880	-	thioredoxin
1830	 31.60	+1	1883528..1883815	-	95	157738100	-	Abu_1881	-	hypothetical protein
1831	 19.01	-2	1883858..1884241	-	127	157738101	-	Abu_1882	-	hypothetical protein
1832	 30.58	+1	1884277..1888812	-	1511	157738102	rpoC	Abu_1883	-	DNA-directed RNA polymerase, beta' chain
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.