IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1668	 29.14	0	1700434..1701579	-	381	157737938	nspC	Abu_1705	-	carboxynorspermidine decarboxylase
1669	 30.76	+1	1701583..1702785	-	400	157737939	-	Abu_1706	-	saccharopine dehydrogenase (L-lysine-forming)
1670	 23.00	-1	1703478..1704638	+	386	157737940	-	Abu_1707	-	phage integrase family site specific recombinase
1671	 24.83	0	1704660..1705388	+	242	157737941	-	Abu_1708	-	hypothetical protein
1672	 27.78	0	1705737..1705988	+	83	157737942	-	Abu_1709	-	hypothetical protein
1673	 27.18	0	1705912..1706658	+	248	157737943	-	Abu_1710	-	hypothetical protein
1674	 25.81	0	1706658..1707335	+	225	157737944	-	Abu_1711	-	hypothetical protein
1675	 26.63	0	1707337..1708872	+	511	157737945	-	Abu_1712	-	hypothetical protein
1676	 25.53	0	1708884..1709549	+	221	157737946	-	Abu_1713	-	hypothetical protein
1677	 23.36	-1	1710030..1711844	-	604	157737947	-	Abu_1714	-	ATPase, putative
1678	 24.76	0	1711841..1713613	-	590	157737948	-	Abu_1715	-	hypothetical protein
1679	 25.54	0	1713603..1714949	-	448	157737949	hsdS	Abu_1716	-	Type I restriction-modification system specificity determinant
1680	 27.68	0	1714946..1717261	-	771	157737950	hsdM	Abu_1717	-	Type I restriction-modification system, M subunit, putative
1681	 26.45	0	1717694..1718158	+	154	157737951	-	Abu_1718	-	hypothetical protein
1682	 28.33	0	1718372..1718671	-	99	157737952	-	Abu_1719	-	hypothetical protein
1683	 22.76	-1	1719297..1719665	-	122	157737953	-	Abu_1720	-	hypothetical protein
1684	 23.58	0	1719679..1720416	-	245	157737954	-	Abu_1721	-	ErfK/YbiS/YcfS/YnhG family protein
1685	 29.09	0	1720413..1720577	-	54	157737955	-	Abu_1722	-	hypothetical protein
1686	 28.91	0	1720707..1721858	+	383	157737956	metC1	Abu_1723	-	cystathionine gamma-synthase
1687	 26.65	0	1721860..1723356	+	498	157737957	metC2	Abu_1724	-	cystathionine gamma-synthase
1688	 23.27	-1	1723369..1724034	-	221	157737958	-	Abu_1725	-	DNA-binding response regulator
1689	 27.15	0	1724123..1726129	+	668	157737959	-	Abu_1726	-	methyl-accepting chemotaxis protein
1690	 24.07	0	1726149..1726742	+	197	157737960	-	Abu_1727	-	hypothetical protein
1691	 23.86	0	1726759..1728954	+	731	157737961	-	Abu_1728	-	response regulator receiver
1692	 26.05	0	1729094..1731208	+	704	157737962	-	Abu_1729	-	methyl-accepting chemotaxis protein
1693	 22.57	-1	1731313..1734165	+	950	157737963	-	Abu_1730	-	two-component sensor histidine kinase
1694	 26.03	0	1734186..1735061	-	291	157737964	-	Abu_1731	-	auxin efflux carrier protein
1695	 22.99	-1	1735261..1736130	-	289	157737965	-	Abu_1732	-	hypothetical protein
1696	 24.47	0	1736109..1736582	-	157	157737966	-	Abu_1733	-	hypothetical protein
1697	 28.51	0	1736582..1737907	-	441	157737967	-	Abu_1734	-	hypothetical protein
1698	 31.48	+1	1737904..1739304	-	466	157737968	-	Abu_1735	-	putative cytochrome
1699	 23.12	-1	1739386..1740051	-	221	157737969	-	Abu_1736	-	two-component response regulator
1700	 25.05	0	1740161..1740715	+	184	157737970	-	Abu_1737	-	acetyltransferase
1701	 23.98	0	1740712..1742154	-	480	157737971	-	Abu_1738	-	putative nickel transporter
1702	 29.23	0	1742151..1743077	-	308	157737972	-	Abu_1739	-	putative cation ABC transporter, periplasmic-binding protein
1703	 23.47	-1	1743200..1743574	+	124	157737973	-	Abu_1740	-	FUR family transcriptional regulator
1704	 28.04	0	1743564..1744754	+	396	157737974	nhaA2	Abu_1741	-	sodium:hydrogen antiporter
1705	 29.11	0	1744767..1745903	-	378	157737975	-	Abu_1742	-	diheme cytochrome c peroxidase
1706	 23.95	0	1745903..1746808	-	301	157737976	-	Abu_1743	-	sterol desaturase-related protein
1707	 24.66	0	1746816..1747760	-	314	157737977	-	Abu_1744	-	hypothetical protein
1708	 28.84	0	1747757..1749157	-	466	157737978	-	Abu_1745	-	hypothetical protein
1709	 29.57	0	1749123..1750478	-	451	157737979	-	Abu_1746	-	hypothetical protein
1710	 21.31	-1	1750576..1752654	-	692	157737980	-	Abu_1747	-	hypothetical protein
1711	 38.41	+2	1752826..1753140	+	104	157737981	atpE	Abu_1748	-	F0F1 ATP synthase subunit C
1712	 25.56	0	1753279..1755402	+	707	157737982	-	Abu_1749	-	methyl-accepting chemotaxis protein
1713	 24.90	0	1755661..1756704	-	347	157737983	-	Abu_1751	-	hypothetical protein
1714	 26.74	0	1756791..1757594	-	267	157737984	-	Abu_1752	-	ion transport protein
1715	 21.61	-1	1757654..1758037	-	127	157737985	-	Abu_1753	-	hypothetical protein
1716	 24.76	0	1758047..1758361	-	104	157737986	-	Abu_1754	-	hypothetical protein
1717	 26.94	0	1758647..1758865	+	72	157737987	-	Abu_1755	-	hypothetical protein
1718	 26.98	0	1758877..1759632	+	251	157737988	thiD	Abu_1756	-	phosphomethylpyrimidine kinase
1719	 30.67	+1	1759707..1760945	+	412	157737989	proA	Abu_1757	-	gamma-glutamyl phosphate reductase
1720	 27.67	0	1760948..1762837	+	629	157737990	-	Abu_1758	-	glycosyl hydrolase, putative
1721	 27.93	0	1762865..1763512	-	215	157737991	-	Abu_1759	-	hypothetical protein
1722	 23.59	0	1763645..1764958	+	437	157737992	-	Abu_1760	-	ferredoxin-like protein
1723	 22.88	-1	1764960..1766279	-	439	157737993	-	Abu_1761	-	two-component sensor histidine kinase
1724	 23.05	-1	1766269..1766949	-	226	157737994	-	Abu_1762	-	two-component response regulator
1725	 24.28	0	1766992..1767510	+	172	157737995	ogt	Abu_1763	-	putative methylated-DNA-protein-cysteine methyltransferase
1726	 25.39	0	1767500..1768909	+	469	157737996	-	Abu_1764	-	phosphohexosemutase
1727	 25.21	0	1768884..1769609	+	241	157737997	-	Abu_1765	-	putative nitrilase/cyanide hydratase
1728	 28.11	0	1769686..1770183	+	165	157737998	-	Abu_1766	-	hypothetical protein
1729	 29.20	0	1770421..1770759	+	112	157737999	-	Abu_1767	-	hypothetical protein
1730	 20.82	-1	1770753..1771511	+	252	157738000	-	Abu_1768	-	hypothetical protein
1731	 30.12	0	1771524..1772021	+	165	157738001	fldA	Abu_1769	-	flavodoxin
1732	 25.78	0	1772045..1772494	-	149	157738002	fur2	Abu_1770	-	ferric uptake regulation protein
1733	 24.80	0	1772580..1772954	-	124	157738003	-	Abu_1771	-	hypothetical protein
1734	 26.02	0	1773029..1773766	-	245	157738004	ate	Abu_1772	-	arginyl-tRNA-protein transferase
1735	 27.26	0	1773769..1774509	-	246	157738005	trpA	Abu_1773	-	tryptophan synthase, alpha chain
1736	 28.18	0	1774563..1775960	-	465	157738006	-	Abu_1774	-	voltage-gated chloride channel family protein
1737	 30.12	0	1776133..1776942	+	269	157738007	panB	Abu_1775	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1738	 29.96	0	1776946..1777983	+	345	157738008	ruvB	Abu_1776	-	Holliday junction DNA helicase B
1739	 25.21	0	1777980..1779026	+	348	157738009	amaA	Abu_1777	-	acid membrane antigen A
1740	 27.89	0	1779023..1779757	-	244	157738010	-	Abu_1778	-	hypothetical protein
1741	 23.09	-1	1785709..1786635	-	308	157738011	-	Abu_1785	-	radical SAM domain-containing protein
1742	 31.80	+1	1786713..1787753	-	346	157738012	hemE	Abu_1786	-	uroporphyrinogen decarboxylase
1743	 28.65	0	1787766..1788278	-	170	157738013	-	Abu_1787	-	putative integral membrane protein
1744	 30.44	0	1788278..1789315	-	345	157738014	asd	Abu_1788	-	aspartate-semialdehyde dehydrogenase
1745	 29.04	0	1789318..1791900	-	860	157738015	gyrA	Abu_1789	-	DNA gyrase subunit A
1746	 24.07	0	1792039..1792254	-	71	157738016	-	Abu_1790	-	hypothetical protein
1747	 29.27	0	1792338..1793519	-	393	157738017	argJ	Abu_1791	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1748	 28.55	0	1793521..1794648	-	375	157738018	-	Abu_1792	-	potassium channel protein, putative
1749	 32.80	+1	1794672..1794860	-	62	157738019	rpmB	Abu_1793	-	50S ribosomal protein L28
1750	 19.38	-2	1794926..1795792	-	288	157738020	-	Abu_1794	-	hypothetical protein
1751	 24.66	0	1796039..1796407	+	122	157738021	-	Abu_1795	-	putative heptose phosphatase
1752	 25.89	0	1796416..1797423	+	335	157738022	waaD	Abu_1796	-	ADP-L-glycero-D-manno-heptose-6-epimerase
1753	 27.14	0	1797424..1798860	+	478	157738023	waaE	Abu_1797	-	ADP-heptose synthase
1754	 32.28	+1	1798841..1799410	+	189	157738024	gmhA	Abu_1798	-	D-sedoheptulose 7-phosphate isomerase
1755	 24.33	0	1799500..1801398	+	632	157738025	-	Abu_1799	-	putative sulfatase
1756	 28.01	0	1801417..1802355	-	312	157738026	waaF	Abu_1800	-	lipopolysaccharide heptosyltransferase II
1757	 24.29	0	1802348..1803409	-	353	157738027	-	Abu_1801	-	hypothetical protein
1758	 25.19	0	1803402..1804322	-	306	157738028	-	Abu_1802	-	putative heptosyltransferase
1759	 19.20	-2	1804322..1805071	-	249	157738029	-	Abu_1803	-	hypothetical protein
1760	 24.04	0	1805206..1806852	+	548	157738030	-	Abu_1804	-	hypothetical protein
1761	 21.51	-1	1806870..1807427	-	185	157738031	-	Abu_1805	-	hypothetical protein
1762	 20.92	-1	1807436..1808329	-	297	157738032	-	Abu_1806	-	hypothetical protein
1763	 26.68	0	1808338..1809795	-	485	157738033	-	Abu_1807	-	putative acetyltransferase
1764	 22.25	-1	1809801..1810928	-	375	157738034	-	Abu_1808	-	putative glycosyltransferase
1765	 29.33	0	1810891..1811640	-	249	157738035	-	Abu_1809	-	putative glycosyltransferase
1766	 23.44	-1	1811720..1812790	+	356	157738036	-	Abu_1810	-	hypothetical protein
1767	 21.60	-1	1812813..1813826	+	337	157738037	-	Abu_1811	-	glycosyltransferase
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.