IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.98   STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1634	 29.98	0	1670570..1671553	+	327	157737904	-	Abu_1671	-	hypothetical protein
1635	 25.37	0	1671676..1672077	+	133	157737905	-	Abu_1672	-	hypothetical protein
1636	 26.82	0	1672077..1672583	+	168	157737906	-	Abu_1673	-	hypothetical protein
1637	 31.59	+1	1672570..1674291	+	573	157737907	-	Abu_1674	-	phage uncharacterized protein
1638	 28.52	0	1674292..1675683	+	463	157737908	-	Abu_1675	-	phage uncharacterized protein
1639	 28.91	0	1675676..1676851	+	391	157737909	-	Abu_1676	-	Mu-like prophage F protein, putative
1640	 27.98	0	1676951..1677436	+	161	157737910	-	Abu_1677	-	Mu-like prophage G protein, putative
1641	 28.62	0	1677428..1677703	-	91	157737911	-	Abu_1678	-	hypothetical protein
1642	 22.84	-1	1677853..1679139	+	428	157737912	-	Abu_1679	-	hypothetical protein
1643	 18.67	-2	1679284..1680456	+	390	157737913	-	Abu_1680	-	hypothetical protein
1644	 27.26	0	1680925..1681830	-	301	157737914	-	Abu_1681	-	DnaB-like helicase-like protein
1645	 25.49	0	1681823..1682128	-	101	157737915	-	Abu_1682	-	hypothetical protein
1646	 30.52	+1	1682109..1682321	-	70	157737916	-	Abu_1683	-	hypothetical protein
1647	 29.44	0	1682691..1683281	-	196	157737917	-	Abu_1684	-	hypothetical protein
1648	 30.44	0	1683268..1683924	-	218	157737918	-	Abu_1685	-	phage uncharacterized protein
1649	 30.16	0	1683987..1684238	-	83	157737919	-	Abu_1686	-	hypothetical protein
1650	 30.00	0	1684342..1684581	-	79	157737920	-	Abu_1687	-	hypothetical protein
1651	 25.08	0	1684551..1685216	-	221	157737921	-	Abu_1688	-	hypothetical protein
1652	 28.33	0	1685206..1685904	-	232	157737922	-	Abu_1689	-	prophage Mu, DNA transposition protein B
1653	 29.58	0	1685976..1688081	-	701	157737923	-	Abu_1690	-	prophage Mu, DNA transposition protein A
1654	 32.02	+1	1688083..1688310	-	75	157737924	-	Abu_1691	-	hypothetical protein
1655	 28.32	0	1688706..1689383	+	225	157737925	-	Abu_1692	-	phage repressor protein, putative
1656	 25.87	0	1689400..1690149	+	249	157737926	-	Abu_1693	-	hypothetical protein
1657	 20.88	-1	1690554..1691051	-	165	157737927	-	Abu_1694	-	hypothetical protein
1658	 17.75	-2	1691032..1691910	-	292	157737928	-	Abu_1695	-	hypothetical protein
1659	 28.70	0	1691983..1692867	-	294	157737929	era	Abu_1696	-	GTP-binding protein Era
1660	 18.42	-2	1692943..1693653	-	236	157737930	-	Abu_1697	-	hypothetical protein
1661	 27.42	0	1693660..1695165	-	501	157737931	-	Abu_1698	-	Mg chelatase-related protein
1662	 24.00	0	1695366..1695740	+	124	157737932	-	Abu_1699	-	hypothetical protein
1663	 27.71	0	1695745..1696260	-	171	157737933	def	Abu_1700	-	peptide deformylase
1664	 32.14	+1	1696269..1696853	-	194	157737934	clpP	Abu_1701	-	ATP-dependent Clp protease proteolytic subunit
1665	 29.19	0	1696868..1698169	-	433	157737935	tig	Abu_1702	-	trigger factor
1666	 26.21	0	1698317..1699453	-	378	157737936	-	Abu_1703	-	hypothetical protein
1667	 28.11	0	1699454..1700410	-	318	157737937	-	Abu_1704	-	hypothetical protein
1668	 29.14	0	1700434..1701579	-	381	157737938	nspC	Abu_1705	-	carboxynorspermidine decarboxylase
1669	 30.76	+1	1701583..1702785	-	400	157737939	-	Abu_1706	-	saccharopine dehydrogenase (L-lysine-forming)
1670	 23.00	-1	1703478..1704638	+	386	157737940	-	Abu_1707	-	phage integrase family site specific recombinase
1671	 24.83	0	1704660..1705388	+	242	157737941	-	Abu_1708	-	hypothetical protein
1672	 27.78	0	1705737..1705988	+	83	157737942	-	Abu_1709	-	hypothetical protein
1673	 27.18	0	1705912..1706658	+	248	157737943	-	Abu_1710	-	hypothetical protein
1674	 25.81	0	1706658..1707335	+	225	157737944	-	Abu_1711	-	hypothetical protein
1675	 26.63	0	1707337..1708872	+	511	157737945	-	Abu_1712	-	hypothetical protein
1676	 25.53	0	1708884..1709549	+	221	157737946	-	Abu_1713	-	hypothetical protein
1677	 23.36	-1	1710030..1711844	-	604	157737947	-	Abu_1714	-	ATPase, putative
1678	 24.76	0	1711841..1713613	-	590	157737948	-	Abu_1715	-	hypothetical protein
1679	 25.54	0	1713603..1714949	-	448	157737949	hsdS	Abu_1716	-	Type I restriction-modification system specificity determinant
1680	 27.68	0	1714946..1717261	-	771	157737950	hsdM	Abu_1717	-	Type I restriction-modification system, M subunit, putative
1681	 26.45	0	1717694..1718158	+	154	157737951	-	Abu_1718	-	hypothetical protein
1682	 28.33	0	1718372..1718671	-	99	157737952	-	Abu_1719	-	hypothetical protein
1683	 22.76	-1	1719297..1719665	-	122	157737953	-	Abu_1720	-	hypothetical protein
1684	 23.58	0	1719679..1720416	-	245	157737954	-	Abu_1721	-	ErfK/YbiS/YcfS/YnhG family protein
1685	 29.09	0	1720413..1720577	-	54	157737955	-	Abu_1722	-	hypothetical protein
1686	 28.91	0	1720707..1721858	+	383	157737956	metC1	Abu_1723	-	cystathionine gamma-synthase
1687	 26.65	0	1721860..1723356	+	498	157737957	metC2	Abu_1724	-	cystathionine gamma-synthase
1688	 23.27	-1	1723369..1724034	-	221	157737958	-	Abu_1725	-	DNA-binding response regulator
1689	 27.15	0	1724123..1726129	+	668	157737959	-	Abu_1726	-	methyl-accepting chemotaxis protein
1690	 24.07	0	1726149..1726742	+	197	157737960	-	Abu_1727	-	hypothetical protein
1691	 23.86	0	1726759..1728954	+	731	157737961	-	Abu_1728	-	response regulator receiver
1692	 26.05	0	1729094..1731208	+	704	157737962	-	Abu_1729	-	methyl-accepting chemotaxis protein
1693	 22.57	-1	1731313..1734165	+	950	157737963	-	Abu_1730	-	two-component sensor histidine kinase
1694	 26.03	0	1734186..1735061	-	291	157737964	-	Abu_1731	-	auxin efflux carrier protein
1695	 22.99	-1	1735261..1736130	-	289	157737965	-	Abu_1732	-	hypothetical protein
1696	 24.47	0	1736109..1736582	-	157	157737966	-	Abu_1733	-	hypothetical protein
1697	 28.51	0	1736582..1737907	-	441	157737967	-	Abu_1734	-	hypothetical protein
1698	 31.48	+1	1737904..1739304	-	466	157737968	-	Abu_1735	-	putative cytochrome
1699	 23.12	-1	1739386..1740051	-	221	157737969	-	Abu_1736	-	two-component response regulator
1700	 25.05	0	1740161..1740715	+	184	157737970	-	Abu_1737	-	acetyltransferase
1701	 23.98	0	1740712..1742154	-	480	157737971	-	Abu_1738	-	putative nickel transporter
1702	 29.23	0	1742151..1743077	-	308	157737972	-	Abu_1739	-	putative cation ABC transporter, periplasmic-binding protein
1703	 23.47	-1	1743200..1743574	+	124	157737973	-	Abu_1740	-	FUR family transcriptional regulator
1704	 28.04	0	1743564..1744754	+	396	157737974	nhaA2	Abu_1741	-	sodium:hydrogen antiporter
1705	 29.11	0	1744767..1745903	-	378	157737975	-	Abu_1742	-	diheme cytochrome c peroxidase
1706	 23.95	0	1745903..1746808	-	301	157737976	-	Abu_1743	-	sterol desaturase-related protein
1707	 24.66	0	1746816..1747760	-	314	157737977	-	Abu_1744	-	hypothetical protein
1708	 28.84	0	1747757..1749157	-	466	157737978	-	Abu_1745	-	hypothetical protein
1709	 29.57	0	1749123..1750478	-	451	157737979	-	Abu_1746	-	hypothetical protein
1710	 21.31	-1	1750576..1752654	-	692	157737980	-	Abu_1747	-	hypothetical protein
1711	 38.41	+2	1752826..1753140	+	104	157737981	atpE	Abu_1748	-	F0F1 ATP synthase subunit C
1712	 25.56	0	1753279..1755402	+	707	157737982	-	Abu_1749	-	methyl-accepting chemotaxis protein
1713	 24.90	0	1755661..1756704	-	347	157737983	-	Abu_1751	-	hypothetical protein
1714	 26.74	0	1756791..1757594	-	267	157737984	-	Abu_1752	-	ion transport protein
1715	 21.61	-1	1757654..1758037	-	127	157737985	-	Abu_1753	-	hypothetical protein
1716	 24.76	0	1758047..1758361	-	104	157737986	-	Abu_1754	-	hypothetical protein
1717	 26.94	0	1758647..1758865	+	72	157737987	-	Abu_1755	-	hypothetical protein
1718	 26.98	0	1758877..1759632	+	251	157737988	thiD	Abu_1756	-	phosphomethylpyrimidine kinase
1719	 30.67	+1	1759707..1760945	+	412	157737989	proA	Abu_1757	-	gamma-glutamyl phosphate reductase
1720	 27.67	0	1760948..1762837	+	629	157737990	-	Abu_1758	-	glycosyl hydrolase, putative
1721	 27.93	0	1762865..1763512	-	215	157737991	-	Abu_1759	-	hypothetical protein
1722	 23.59	0	1763645..1764958	+	437	157737992	-	Abu_1760	-	ferredoxin-like protein
1723	 22.88	-1	1764960..1766279	-	439	157737993	-	Abu_1761	-	two-component sensor histidine kinase
1724	 23.05	-1	1766269..1766949	-	226	157737994	-	Abu_1762	-	two-component response regulator
1725	 24.28	0	1766992..1767510	+	172	157737995	ogt	Abu_1763	-	putative methylated-DNA-protein-cysteine methyltransferase
1726	 25.39	0	1767500..1768909	+	469	157737996	-	Abu_1764	-	phosphohexosemutase
1727	 25.21	0	1768884..1769609	+	241	157737997	-	Abu_1765	-	putative nitrilase/cyanide hydratase
1728	 28.11	0	1769686..1770183	+	165	157737998	-	Abu_1766	-	hypothetical protein
1729	 29.20	0	1770421..1770759	+	112	157737999	-	Abu_1767	-	hypothetical protein
1730	 20.82	-1	1770753..1771511	+	252	157738000	-	Abu_1768	-	hypothetical protein
1731	 30.12	0	1771524..1772021	+	165	157738001	fldA	Abu_1769	-	flavodoxin
1732	 25.78	0	1772045..1772494	-	149	157738002	fur2	Abu_1770	-	ferric uptake regulation protein
1733	 24.80	0	1772580..1772954	-	124	157738003	-	Abu_1771	-	hypothetical protein
26.98	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.