IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1541	 25.81	0	1590340..1591548	-	402	157737811	-	Abu_1577	-	hypothetical protein
1542	 32.57	+1	1591620..1592540	-	306	157737812	ppa	Abu_1578	-	putative manganese-dependent inorganic pyrophosphatase
1543	 29.67	0	1592660..1593259	-	199	157737813	-	Abu_1579	-	hypothetical protein
1544	 25.56	0	1593265..1593804	-	179	157737814	-	Abu_1580	-	putative asparaginase
1545	 29.14	0	1593755..1595161	-	468	157737815	aspA	Abu_1581	-	aspartate ammonia-lyase
1546	 22.17	-1	1595227..1595907	-	226	157737816	-	Abu_1582	-	two-component response regulator
1547	 23.64	0	1595910..1597034	-	374	157737817	-	Abu_1583	-	two-component sensor histidine kinase
1548	 29.78	0	1597106..1598542	-	478	157737818	-	Abu_1584	-	sodium:alanine symporter
1549	 30.17	0	1598675..1599370	-	231	157737819	pfs	Abu_1585	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1550	 29.57	0	1599363..1600292	-	309	157737820	fabD	Abu_1586	-	malonyl coenzyme A-(acyl carrier protein) transacylase
1551	 36.56	+2	1600427..1601014	-	195	157737821	slyD	Abu_1587	-	peptidyl-prolyl cis-trans isomerase
1552	 28.47	0	1601036..1601980	-	314	157737822	-	Abu_1588	-	hypothetical protein
1553	 31.81	+1	1601982..1602506	-	174	157737823	-	Abu_1589	-	OmpA/MotB precursor
1554	 28.38	0	1602667..1603959	-	430	157737824	tolB	Abu_1590	-	translocation protein TolB
1555	 27.05	0	1603964..1604695	-	243	157737825	-	Abu_1591	-	hypothetical protein
1556	 25.13	0	1604701..1605090	-	129	157737826	exbD3	Abu_1592	-	biopolymer transport protein ExbD
1557	 28.88	0	1605095..1605655	-	186	157737827	exbB3	Abu_1593	-	biopolymer transport protein ExbB
1558	 33.86	+1	1605662..1606039	-	125	157737828	atpC	Abu_1594	-	F0F1 ATP synthase subunit epsilon
1559	 35.84	+2	1606063..1607457	-	464	157737829	atpD	Abu_1595	-	F0F1 ATP synthase subunit beta
1560	 30.29	0	1607477..1608364	-	295	157737830	atpG	Abu_1596	-	F0F1 ATP synthase subunit gamma
1561	 32.94	+1	1608375..1609892	-	505	157737831	atpA	Abu_1597	-	F0F1 ATP synthase subunit alpha
1562	 23.35	-1	1609914..1610444	-	176	157737832	atpH	Abu_1598	-	F0F1 ATP synthase subunit delta
1563	 30.41	0	1610444..1610956	-	170	157737833	atpF	Abu_1599	-	ATP synthase F0 sector, subunit B
1564	 31.44	+1	1610970..1611392	-	140	157737834	atpF'	Abu_1600	-	ATP synthase F0 sector, B' subunit
1565	 25.26	0	1611511..1612365	-	284	157737835	parB	Abu_1601	-	transcriptional regulator involved in chromosome partitioning ParB
1566	 28.83	0	1612386..1613162	-	258	157737836	parA	Abu_1602	-	ATPases involved in chromosome partitioning ParA
1567	 23.43	-1	1613159..1613794	-	211	157737837	birA	Abu_1603	-	biotin--protein ligase
1568	 24.22	0	1613888..1614589	-	233	157737838	-	Abu_1604	-	hypothetical protein
1569	 25.50	0	1614821..1615714	+	297	157737839	-	Abu_1605	-	auxin efflux carrier protein
1570	 27.90	0	1615719..1616639	-	306	157737840	fmt	Abu_1606	-	methionyl-tRNA formyltransferase
1571	 27.45	0	1616649..1617413	-	254	157737841	proB	Abu_1607	-	gamma-glutamyl kinase
1572	 29.85	0	1617410..1618501	-	363	157737842	obg	Abu_1608	-	GTP-binding protein
1573	 33.33	+1	1618631..1618888	-	85	157737843	rpmA	Abu_1609	-	50S ribosomal protein L27
1574	 31.13	+1	1618913..1619230	-	105	157737844	rplU	Abu_1610	-	50S ribosomal protein L21
1575	 26.48	0	1619364..1620998	-	544	157737845	dnaG	Abu_1611	-	DNA primase
1576	 22.67	-1	1621080..1622129	+	349	157737846	-	Abu_1612	-	hypothetical protein
1577	 29.78	0	1622177..1622851	+	224	157737847	rnc	Abu_1613	-	ribonuclease III
1578	 30.64	+1	1622855..1623931	+	358	157737848	aroC	Abu_1614	-	chorismate synthase
1579	 24.70	0	1623921..1624673	+	250	157737849	-	Abu_1615	-	hypothetical protein
1580	 31.34	+1	1624748..1625599	-	283	157737850	-	Abu_1616	-	M48 family peptidase
1581	 24.75	0	1625653..1626339	-	228	157737851	-	Abu_1617	-	hypothetical protein
1582	 27.08	0	1626436..1626915	+	159	157737852	-	Abu_1618	-	phosphoglycerate/bisphosphoglycerate mutase, putative
1583	 27.05	0	1626931..1627344	-	137	157737853	-	Abu_1619	-	hypothetical protein
1584	 27.59	0	1627346..1628686	-	446	157737854	trmE	Abu_1620	-	tRNA modification GTPase TrmE
1585	 25.57	0	1628689..1629564	-	291	157737855	-	Abu_1621	-	hypothetical protein
1586	 27.72	0	1629585..1631186	-	533	157737856	oxaA	Abu_1622	-	putative inner membrane protein translocase component YidC
1587	 22.52	-1	1631179..1631511	-	110	157737857	-	Abu_1623	-	hypothetical protein
1588	 33.33	+1	1631831..1631965	-	44	157737858	rpmH	Abu_1625	-	50S ribosomal protein L34
1589	 29.38	0	1632040..1634619	-	859	157737859	clpB	Abu_1626	-	ATP-dependent Clp protease, ATP-binding subunit
1590	 27.63	0	1634738..1635316	+	192	157737860	rnhB	Abu_1627	-	ribonuclease HII
1591	 28.57	0	1635318..1635632	-	104	157737861	-	Abu_1628	-	hypothetical protein
1592	 28.19	0	1635642..1636535	-	297	157737862	-	Abu_1629	-	hypothetical protein
1593	 27.78	0	1636655..1636996	+	113	157737863	-	Abu_1630	-	hypothetical protein
1594	 28.08	0	1636993..1637487	-	164	157737864	msrA	Abu_1631	-	peptide methionine sulfoxide reductase
1595	 27.22	0	1637490..1637849	-	119	157737865	msrB	Abu_1632	-	methionine sulfoxide reductase B
1596	 25.37	0	1637861..1638475	-	204	157737866	-	Abu_1633	-	fumarylacetoacetate (FAA) hydrolase
1597	 28.07	0	1638538..1638879	+	113	157737867	-	Abu_1634	-	hypothetical protein
1598	 26.64	0	1638876..1639532	-	218	157737868	-	Abu_1635	-	phosphohydrolase (MUTT/NUDIX family protein)
1599	 29.47	0	1639533..1640801	-	422	157737869	bioA	Abu_1636	-	7,8-diaminopelargonic acid synthetase
1600	 23.90	0	1640849..1643446	-	865	157737870	-	Abu_1637	-	two-component sensor histidine kinase
1601	 30.40	0	1643562..1645094	-	510	157737871	purH	Abu_1638	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1602	 32.66	+1	1645294..1647507	-	737	157737872	purL	Abu_1639	-	phosphoribosylformylglycinamidine synthase II
1603	 26.44	0	1647572..1648543	-	323	157737873	-	Abu_1640	-	hypothetical protein
1604	 28.55	0	1648614..1649804	+	396	157737874	-	Abu_1641	-	M24/M37 family peptidase
1605	 29.14	0	1649846..1650418	-	190	157737875	folE	Abu_1642	-	GTP cyclohydrolase I
1606	 24.53	0	1650441..1651394	-	317	157737876	corA	Abu_1643	-	magnesium and cobalt transport protein
1607	 19.56	-2	1651410..1652600	-	396	157737877	ctsF	Abu_1644	-	transformation system protein CtsF
1608	 24.85	0	1652602..1653603	-	333	157737878	ctsE	Abu_1645	-	transformation system protein CtsE
1609	 25.48	0	1653875..1654447	-	190	157737879	-	Abu_1646	-	hypothetical protein
1610	 23.46	-1	1654459..1655106	-	215	157737880	-	Abu_1647	-	hypothetical protein
1611	 27.52	0	1655167..1655820	+	217	157737881	-	Abu_1648	-	hypothetical protein
1612	 27.08	0	1655848..1656423	-	191	157737882	-	Abu_1649	-	hypothetical protein
1613	 29.12	0	1656508..1657290	-	260	157737883	-	Abu_1650	-	N6 adenine-specific DNA methyltransferase, D12 class
1614	 29.22	0	1657398..1658345	-	315	157737884	-	Abu_1651	-	phage tail protein D
1615	 27.05	0	1658339..1658545	-	68	157737885	-	Abu_1652	-	hypothetical protein
1616	 29.27	0	1658542..1658910	-	122	157737886	-	Abu_1653	-	hypothetical protein
1617	 32.34	+1	1658910..1660814	-	634	157737887	-	Abu_1654	-	TP901 family phage tail tape measure protein , putative
1618	 27.90	0	1660960..1661235	-	91	157737888	-	Abu_1655	-	hypothetical protein
1619	 33.54	+1	1661249..1661740	-	163	157737889	-	Abu_1656	-	phage major tail tube protein
1620	 31.48	+1	1661742..1662926	-	394	157737890	-	Abu_1657	-	phage tail sheath protein
1621	 30.89	+1	1662954..1663199	-	81	157737891	-	Abu_1658	-	hypothetical protein
1622	 27.89	0	1663189..1663794	-	201	157737892	-	Abu_1659	-	tail fiber assembly protein
1623	 30.90	+1	1663807..1664916	-	369	157737893	-	Abu_1660	-	hypothetical protein
1624	 27.86	0	1664913..1665551	-	212	157737894	-	Abu_1661	-	tail protein I, putative
1625	 28.83	0	1665523..1666698	-	391	157737895	-	Abu_1662	-	baseplate assembly protein J, putative
1626	 29.56	0	1666695..1667012	-	105	157737896	-	Abu_1663	-	putative baseplate assembly protein W
1627	 30.33	0	1667012..1667743	-	243	157737897	-	Abu_1664	-	baseplate assembly protein V, putative
1628	 28.93	0	1667740..1668057	-	105	157737898	-	Abu_1665	-	hypothetical protein
1629	 29.39	0	1668155..1668382	-	75	157737899	-	Abu_1666	-	hypothetical protein
1630	 24.16	0	1668375..1668701	-	108	157737900	-	Abu_1667	-	hypothetical protein
1631	 25.40	0	1668877..1669317	+	146	157737901	-	Abu_1668	-	hypothetical protein
1632	 29.96	0	1669310..1670110	+	266	157737902	-	Abu_1669	-	Mu-like prophage I protein, putative
1633	 27.40	0	1670123..1670560	+	145	157737903	-	Abu_1670	-	hypothetical protein
1634	 29.98	0	1670570..1671553	+	327	157737904	-	Abu_1671	-	hypothetical protein
1635	 25.37	0	1671676..1672077	+	133	157737905	-	Abu_1672	-	hypothetical protein
1636	 26.82	0	1672077..1672583	+	168	157737906	-	Abu_1673	-	hypothetical protein
1637	 31.59	+1	1672570..1674291	+	573	157737907	-	Abu_1674	-	phage uncharacterized protein
1638	 28.52	0	1674292..1675683	+	463	157737908	-	Abu_1675	-	phage uncharacterized protein
1639	 28.91	0	1675676..1676851	+	391	157737909	-	Abu_1676	-	Mu-like prophage F protein, putative
1640	 27.98	0	1676951..1677436	+	161	157737910	-	Abu_1677	-	Mu-like prophage G protein, putative
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.