IslandPathversion 1.0

IslandPath Analysis: Arcobacter butzleri RM4018



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 26.98 STD DEV: 3.50
Arcobacter butzleri RM4018, complete genome - 1..2341251
2259 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1502	 30.59	+1	1543848..1544357	+	169	157737772	-	Abu_1537	-	putative FMN reductase
1503	 26.58	0	1544415..1545791	+	458	157737773	-	Abu_1538	-	PhoH family protein
1504	 23.44	-1	1545860..1547476	+	538	157737774	-	Abu_1539	-	hypothetical protein
1505	 22.73	-1	1547479..1549326	-	615	157737775	-	Abu_1540	-	EAL/PAS/GGDEF domain-containing protein
1506	 30.67	+1	1549302..1549940	+	212	157737776	pdxH	Abu_1541	-	pyridoxamine 5'-phosphate oxidase
1507	 23.65	0	1549946..1552063	-	705	157737777	-	Abu_1542	-	GGDEF/PAS domain-containing protein
1508	 25.79	0	1552101..1553465	-	454	157737778	dbpA	Abu_1543	-	ATP-dependent RNA helicase DbpA
1509	 26.40	0	1553468..1554001	-	177	157737779	-	Abu_1544	-	hypothetical protein
1510	 28.44	0	1554096..1554953	+	285	157737780	-	Abu_1545	-	hypothetical protein
1511	 23.93	0	1554974..1555558	-	194	157737781	-	Abu_1546	-	hypothetical protein
1512	 30.04	0	1555695..1557605	-	636	157737782	htpG	Abu_1547	-	heat shock protein 90
1513	 34.33	+2	1557824..1560031	+	735	157737783	katG	Abu_1548	-	catalase/peroxidase HPI
1514	 29.14	0	1560142..1562025	+	627	157737784	ciaB	Abu_1549	-	CiaB protein
1515	 25.69	0	1562038..1562508	-	156	157737785	-	Abu_1550	-	ankyrin repeat-containing protein
1516	 25.88	0	1562530..1565184	-	884	157737786	pqiB	Abu_1551	-	paraquat-inducible protein B
1517	 29.43	0	1566462..1566896	+	144	157737787	-	Abu_1553	-	hypothetical protein
1518	 25.43	0	1566969..1569524	+	851	157737788	-	Abu_1554	-	EAL/GGDEF domain-containing protein
1519	 28.99	0	1569535..1570017	-	160	157737789	-	Abu_1555	-	hypothetical protein
1520	 25.48	0	1570121..1571062	+	313	157737790	-	Abu_1556	-	hypothetical protein
1521	 29.49	0	1571397..1571864	-	155	157737791	-	Abu_1557	-	hypothetical protein
1522	 30.10	0	1571993..1572580	+	195	157737792	-	Abu_1558	-	hypothetical protein
1523	 26.07	0	1572582..1573655	-	357	157737793	-	Abu_1559	-	putative DNA alkylation repair enzyme
1524	 22.42	-1	1573664..1574524	-	286	157737794	-	Abu_1560	-	putative DNA-binding protein
1525	 22.34	-1	1574592..1575956	-	454	157737795	-	Abu_1561	-	hypothetical protein
1526	 29.30	0	1575967..1576611	-	214	157737796	-	Abu_1562	-	ThiJ/PfpI family transcriptional regulator
1527	 28.94	0	1576789..1577448	+	219	157737797	-	Abu_1563	-	hypothetical protein
1528	 29.55	0	1577728..1580109	-	793	157737798	-	Abu_1564	-	TonB-dependent receptor protein
1529	 23.11	-1	1580277..1580501	+	74	157737799	hicA	Abu_1565	-	Hif-contiguous protein A
1530	 26.67	0	1580525..1580869	+	114	157737800	hicB	Abu_1566	-	Hif-contiguous protein B
1531	 24.51	0	1580874..1581848	-	324	157737801	-	Abu_1567	-	sigma factor regulatory protein FecR/PupR family
1532	 27.43	0	1581849..1582322	-	157	157737802	-	Abu_1568	-	ECF subfamily RNA polymerase sigma factor
1533	 33.62	+1	1582459..1583520	+	353	157737803	speB	Abu_1569	-	arginase
1534	 30.03	0	1583543..1584844	-	433	157737804	leuA2	Abu_1570	-	2-isopropylmalate synthase
1535	 24.05	0	1585025..1585810	-	261	157737805	-	Abu_1571	-	AraC family transcriptional regulator
1536	 23.94	0	1585820..1586149	-	109	157737806	-	Abu_1572	-	PemK family transcriptional regulator
1537	 25.29	0	1586143..1586403	-	86	157737807	-	Abu_1573	-	hypothetical protein
1538	 23.58	0	1586472..1587425	-	317	157737808	-	Abu_1574	-	AraC family transcriptional regulator
1539	 26.72	0	1587544..1589661	+	705	157737809	-	Abu_1575	-	TonB-dependent receptor protein
1540	 33.33	+1	1589687..1590262	-	191	157737810	sodB	Abu_1576	-	superoxide dismutase
1541	 25.81	0	1590340..1591548	-	402	157737811	-	Abu_1577	-	hypothetical protein
1542	 32.57	+1	1591620..1592540	-	306	157737812	ppa	Abu_1578	-	putative manganese-dependent inorganic pyrophosphatase
1543	 29.67	0	1592660..1593259	-	199	157737813	-	Abu_1579	-	hypothetical protein
1544	 25.56	0	1593265..1593804	-	179	157737814	-	Abu_1580	-	putative asparaginase
1545	 29.14	0	1593755..1595161	-	468	157737815	aspA	Abu_1581	-	aspartate ammonia-lyase
1546	 22.17	-1	1595227..1595907	-	226	157737816	-	Abu_1582	-	two-component response regulator
1547	 23.64	0	1595910..1597034	-	374	157737817	-	Abu_1583	-	two-component sensor histidine kinase
1548	 29.78	0	1597106..1598542	-	478	157737818	-	Abu_1584	-	sodium:alanine symporter
1549	 30.17	0	1598675..1599370	-	231	157737819	pfs	Abu_1585	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
1550	 29.57	0	1599363..1600292	-	309	157737820	fabD	Abu_1586	-	malonyl coenzyme A-(acyl carrier protein) transacylase
1551	 36.56	+2	1600427..1601014	-	195	157737821	slyD	Abu_1587	-	peptidyl-prolyl cis-trans isomerase
1552	 28.47	0	1601036..1601980	-	314	157737822	-	Abu_1588	-	hypothetical protein
1553	 31.81	+1	1601982..1602506	-	174	157737823	-	Abu_1589	-	OmpA/MotB precursor
1554	 28.38	0	1602667..1603959	-	430	157737824	tolB	Abu_1590	-	translocation protein TolB
1555	 27.05	0	1603964..1604695	-	243	157737825	-	Abu_1591	-	hypothetical protein
1556	 25.13	0	1604701..1605090	-	129	157737826	exbD3	Abu_1592	-	biopolymer transport protein ExbD
1557	 28.88	0	1605095..1605655	-	186	157737827	exbB3	Abu_1593	-	biopolymer transport protein ExbB
1558	 33.86	+1	1605662..1606039	-	125	157737828	atpC	Abu_1594	-	F0F1 ATP synthase subunit epsilon
1559	 35.84	+2	1606063..1607457	-	464	157737829	atpD	Abu_1595	-	F0F1 ATP synthase subunit beta
1560	 30.29	0	1607477..1608364	-	295	157737830	atpG	Abu_1596	-	F0F1 ATP synthase subunit gamma
1561	 32.94	+1	1608375..1609892	-	505	157737831	atpA	Abu_1597	-	F0F1 ATP synthase subunit alpha
1562	 23.35	-1	1609914..1610444	-	176	157737832	atpH	Abu_1598	-	F0F1 ATP synthase subunit delta
1563	 30.41	0	1610444..1610956	-	170	157737833	atpF	Abu_1599	-	ATP synthase F0 sector, subunit B
1564	 31.44	+1	1610970..1611392	-	140	157737834	atpF'	Abu_1600	-	ATP synthase F0 sector, B' subunit
1565	 25.26	0	1611511..1612365	-	284	157737835	parB	Abu_1601	-	transcriptional regulator involved in chromosome partitioning ParB
1566	 28.83	0	1612386..1613162	-	258	157737836	parA	Abu_1602	-	ATPases involved in chromosome partitioning ParA
1567	 23.43	-1	1613159..1613794	-	211	157737837	birA	Abu_1603	-	biotin--protein ligase
1568	 24.22	0	1613888..1614589	-	233	157737838	-	Abu_1604	-	hypothetical protein
1569	 25.50	0	1614821..1615714	+	297	157737839	-	Abu_1605	-	auxin efflux carrier protein
1570	 27.90	0	1615719..1616639	-	306	157737840	fmt	Abu_1606	-	methionyl-tRNA formyltransferase
1571	 27.45	0	1616649..1617413	-	254	157737841	proB	Abu_1607	-	gamma-glutamyl kinase
1572	 29.85	0	1617410..1618501	-	363	157737842	obg	Abu_1608	-	GTP-binding protein
1573	 33.33	+1	1618631..1618888	-	85	157737843	rpmA	Abu_1609	-	50S ribosomal protein L27
1574	 31.13	+1	1618913..1619230	-	105	157737844	rplU	Abu_1610	-	50S ribosomal protein L21
1575	 26.48	0	1619364..1620998	-	544	157737845	dnaG	Abu_1611	-	DNA primase
1576	 22.67	-1	1621080..1622129	+	349	157737846	-	Abu_1612	-	hypothetical protein
1577	 29.78	0	1622177..1622851	+	224	157737847	rnc	Abu_1613	-	ribonuclease III
1578	 30.64	+1	1622855..1623931	+	358	157737848	aroC	Abu_1614	-	chorismate synthase
1579	 24.70	0	1623921..1624673	+	250	157737849	-	Abu_1615	-	hypothetical protein
1580	 31.34	+1	1624748..1625599	-	283	157737850	-	Abu_1616	-	M48 family peptidase
1581	 24.75	0	1625653..1626339	-	228	157737851	-	Abu_1617	-	hypothetical protein
1582	 27.08	0	1626436..1626915	+	159	157737852	-	Abu_1618	-	phosphoglycerate/bisphosphoglycerate mutase, putative
1583	 27.05	0	1626931..1627344	-	137	157737853	-	Abu_1619	-	hypothetical protein
1584	 27.59	0	1627346..1628686	-	446	157737854	trmE	Abu_1620	-	tRNA modification GTPase TrmE
1585	 25.57	0	1628689..1629564	-	291	157737855	-	Abu_1621	-	hypothetical protein
1586	 27.72	0	1629585..1631186	-	533	157737856	oxaA	Abu_1622	-	putative inner membrane protein translocase component YidC
1587	 22.52	-1	1631179..1631511	-	110	157737857	-	Abu_1623	-	hypothetical protein
1588	 33.33	+1	1631831..1631965	-	44	157737858	rpmH	Abu_1625	-	50S ribosomal protein L34
1589	 29.38	0	1632040..1634619	-	859	157737859	clpB	Abu_1626	-	ATP-dependent Clp protease, ATP-binding subunit
1590	 27.63	0	1634738..1635316	+	192	157737860	rnhB	Abu_1627	-	ribonuclease HII
1591	 28.57	0	1635318..1635632	-	104	157737861	-	Abu_1628	-	hypothetical protein
1592	 28.19	0	1635642..1636535	-	297	157737862	-	Abu_1629	-	hypothetical protein
1593	 27.78	0	1636655..1636996	+	113	157737863	-	Abu_1630	-	hypothetical protein
1594	 28.08	0	1636993..1637487	-	164	157737864	msrA	Abu_1631	-	peptide methionine sulfoxide reductase
1595	 27.22	0	1637490..1637849	-	119	157737865	msrB	Abu_1632	-	methionine sulfoxide reductase B
1596	 25.37	0	1637861..1638475	-	204	157737866	-	Abu_1633	-	fumarylacetoacetate (FAA) hydrolase
1597	 28.07	0	1638538..1638879	+	113	157737867	-	Abu_1634	-	hypothetical protein
1598	 26.64	0	1638876..1639532	-	218	157737868	-	Abu_1635	-	phosphohydrolase (MUTT/NUDIX family protein)
1599	 29.47	0	1639533..1640801	-	422	157737869	bioA	Abu_1636	-	7,8-diaminopelargonic acid synthetase
1600	 23.90	0	1640849..1643446	-	865	157737870	-	Abu_1637	-	two-component sensor histidine kinase
1601	 30.40	0	1643562..1645094	-	510	157737871	purH	Abu_1638	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
26.98	MEAN

3.50	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.